Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

27532 .. 28571

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcgtagtgtgggtttcgataaacttatccctcttgaagattttactgatgtttccaatggatttctagtggacgacacatgtgtgtttggagccgaggtctttgtttgtaaagaaagaagaagacgcaaaggcgagtgcctagcaaggatggagatagcctctgtatgcaaacatgtttggaaggttgagaaattttcatctttaggtgctaaattttatgactctgaaccgttcactgctggggactataattggaagataaagctttatcctgatggatgtggggaaggcaagggtagtcatctctctctgtttttggaattggctagtcccataaccctcccccctggctcagaactatttgtggagtatagatttcgcatcctagaccaaattcgtcatcagcatcatgaactttctagtggtaaggcccggttccgtgacggtacaagtttgggttcgcgtagattcattggacaagaatctttcaggctggaagaaaatgggtttttgaagaatgatgcttgcatggtagaagcagaggtgaccgtccatggaatttctaaagtactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

192

Amino Acids

21.76

Weight (kDa)

6.6

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	466
AcsI	RAATTY	4 cut(s)	194, 215, 396, 561
AfaI	GTAC	2 cut(s)	451, 573
AflIII	ACRYGT	2 cut(s)	80, 175
AgsI	TTSAA	2 cut(s)	38, 517
AjnI	CCWGG	1 cut(s)	349
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
AoxI	GGCC	1 cut(s)	432
ApoI	RAATTY	4 cut(s)	194, 215, 396, 561
AspS9I	GGNCC	1 cut(s)	433
AsuC2I	CCSGG	1 cut(s)	436
AsuHPI	GGTGA	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	2 cut(s)	145, 272
BciT130I	CCWGG	1 cut(s)	351
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	5 cut(s)	68, 143, 330, 389, 423
BfmI	CTRYAG	1 cut(s)	575
BmcAI	AGTACT	1 cut(s)	573
Bme1390I	CCNGG	2 cut(s)	351, 436
BmgT120I	GGNCC	1 cut(s)	433
BmiI	GGNNCC	2 cut(s)	94, 440
BmrFI	CCNGG	2 cut(s)	351, 436
BmsI	GCATC	3 cut(s)	393, 418, 514
BpiI	GAAGAC	1 cut(s)	130
BplI	GAGNNNNNCTC	2 cut(s)	146, 178
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	96, 349, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	96, 349, 556
BseGI	GGATG	3 cut(s)	156, 287, 384
BseMII	CTCAG	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	2 cut(s)	260, 318
BsmFI	GGGAC	2 cut(s)	260, 318
BsnI	GGCC	1 cut(s)	434
Bsp19I	CCATGG	1 cut(s)	556
BspANI	GGCC	1 cut(s)	434
BspCNI	CTCAG	1 cut(s)	368
BspFNI	CGCG	1 cut(s)	466
BspHI	TCATGA	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	94, 440
BssECI	CCNNGG	3 cut(s)	96, 349, 556
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	3 cut(s)	234, 449, 553
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	1 cut(s)	355
BstDSI	CCRYGG	1 cut(s)	556
BstEII	GGTNACC	1 cut(s)	547
BstF5I	GGATG	3 cut(s)	156, 287, 384
BstFNI	CGCG	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	351
BstNSI	RCATGY	2 cut(s)	84, 179
BstPI	GGTNACC	1 cut(s)	547
BstSCI	CCNGG	2 cut(s)	349, 434
BstSFI	CTRYAG	1 cut(s)	575
BstUI	CGCG	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	434
BtgI	CCRYGG	1 cut(s)	556
BtsCI	GGATG	3 cut(s)	156, 287, 384
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	529
CciI	TCATGA	1 cut(s)	412
Cfr13I	GGNCC	1 cut(s)	433
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	450, 572
CviAII	CATG	5 cut(s)	81, 176, 413, 532, 557
CviJI	RGCY	7 cut(s)	95, 161, 268, 329, 354, 434, 496
CviKI_1	RGCY	7 cut(s)	95, 161, 268, 329, 354, 434, 496
CviQI	GTAC	2 cut(s)	450, 572
DdeI	CTNAG	1 cut(s)	355
Eco130I	CCWWGG	1 cut(s)	556
Eco91I	GGTNACC	1 cut(s)	547
EcoO65I	GGTNACC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	349
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	5 cut(s)	84, 179, 416, 535, 560
FaqI	GGGAC	2 cut(s)	260, 318
FatI	CATG	5 cut(s)	80, 175, 412, 531, 556
FokI	GGATG	3 cut(s)	163, 294, 371
FspBI	CTAG	5 cut(s)	68, 143, 330, 389, 423
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	434
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	1 cut(s)	135
Hin1II	CATG	5 cut(s)	84, 179, 416, 535, 560
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	3 cut(s)	224, 471, 485
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	73, 237
Hpy188I	TCNGA	2 cut(s)	229, 358
Hpy188III	TCNNGA	3 cut(s)	35, 275, 413
Hpy8I	GTNNAC	2 cut(s)	73, 237
HpyAV	CCTTC	2 cut(s)	178, 284
HpyCH4III	ACNGT	3 cut(s)	234, 449, 553
HpyCH4V	TGCA	2 cut(s)	171, 531
HpyF3I	CTNAG	1 cut(s)	355
Hsp92II	CATG	5 cut(s)	84, 179, 416, 535, 560
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	228, 288, 336, 363, 449, 478, 482
LweI	GCATC	3 cut(s)	393, 418, 514
MaeI	CTAG	5 cut(s)	68, 143, 330, 389, 423
MaeIII	GTNAC	2 cut(s)	443, 547
MboII	GAAGA	6 cut(s)	50, 132, 135, 271, 512, 529
MluCI	AATT	6 cut(s)	194, 215, 253, 323, 396, 561
MlyI	GAGTC	1 cut(s)	218
MnlI	CCTC	5 cut(s)	42, 91, 172, 353, 538
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	2 cut(s)	351, 436
MvaI	CCWGG	1 cut(s)	351
MvnI	CGCG	1 cut(s)	466
NciI	CCSGG	1 cut(s)	436
NcoI	CCATGG	1 cut(s)	556
NlaIII	CATG	5 cut(s)	84, 179, 416, 535, 560
NlaIV	GGNNCC	2 cut(s)	94, 440
NmeAIII	GCCGAG	1 cut(s)	121
NmuCI	GTSAC	2 cut(s)	443, 547
NspI	RCATGY	2 cut(s)	84, 179
OliI	CACNNNNGTG	1 cut(s)	83
PagI	TCATGA	1 cut(s)	412
PciI	ACATGT	2 cut(s)	80, 175
PfeI	GAWTC	2 cut(s)	471, 485
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	2 cut(s)	80, 175
Psp6I	CCWGG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	547
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	2 cut(s)	94, 440
PspPI	GGNCC	1 cut(s)	433
RsaI	GTAC	2 cut(s)	451, 573
RsaNI	GTAC	2 cut(s)	450, 572
RseI	CAYNNNNRTG	1 cut(s)	83
Sau96I	GGNCC	1 cut(s)	433
ScaI	AGTACT	1 cut(s)	573
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	351, 436
SetI	ASST	5 cut(s)	102, 189, 211, 270, 549
SfaNI	GCATC	3 cut(s)	393, 418, 514
SfcI	CTRYAG	1 cut(s)	575
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	6 cut(s)	194, 215, 253, 323, 396, 561
SspMI	CTAG	5 cut(s)	68, 143, 330, 389, 423
StyD4I	CCNGG	2 cut(s)	349, 434
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	234, 449, 553
TaqI	TCGA	1 cut(s)	18
TasI	AATT	6 cut(s)	194, 215, 253, 323, 396, 561
TatI	WGTACW	1 cut(s)	571
TfiI	GAWTC	2 cut(s)	471, 485
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	2 cut(s)	443, 547
Tsp45I	GTSAC	2 cut(s)	443, 547
TspDTI	ATGAA	3 cut(s)	189, 429, 463
TspGWI	ACGGA	1 cut(s)	431
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	4 cut(s)	194, 215, 396, 561
XceI	RCATGY	2 cut(s)	84, 179
XspI	CTAG	5 cut(s)	68, 143, 330, 389, 423
ZrmI	AGTACT	1 cut(s)	573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.