Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

50446127 .. 50448642

Gene Structure 2516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCGCGTATATGGAGCTGAGGTCTTTGTTTGTAAAGAAAGGAGAACAGGGAAAGTAGAGTGTGAGTGTCTATCAAGGATAATGAATGCCTCTGCGAAGCATGTTTGGAAGCTTGACAACTTTTCACAGTTGGATGCTGCAACTTACTATTCAGAACCATTCAATGCTGGAGGCTATAATTGGAAGATAGAGCTCCATCCCAAGGGAAGTGGTGATGGAAAGGATAGTCATCTTTCTCTGTTTTTCACATTGGCAAATCCTGAGACCCTTCCTCCTGGCTTTCTTATATCTGTAGATTATACATTGCGCATCCTAGATCAAATTCATGGCAGGCATCACTCTAAAATGGGTGCTAAGGGAAGGATCTTCAATGCCTCGAAATTGGAATTGGGGTTTCGCTCAATTCATCGCACCGGAAATGTTCGACAGGCGGACAACGGTTTTTTGATGAATGACACTTGCATAGTGGAGGTAGAGGTCACCGTCCATGGAAGTCCCGAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

168

Amino Acids

18.86

Weight (kDa)

7.75

Isoelectric Point (pI)

32.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	33 - 160	3.8e-31	MATH domain
MATH	PF00917	39 - 162	2.2e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	308
AccII	CGCG	1 cut(s)	6
AciI	CCGC	1 cut(s)	431
AclWI	GGATC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	2 cut(s)	163, 370
AjnI	CCWGG	1 cut(s)	274
AjuI	GAANNNNNNNTTGG	2 cut(s)	371, 403
AluBI	AGCT	3 cut(s)	17, 112, 193
AluI	AGCT	3 cut(s)	17, 112, 193
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	497
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	321
AspLEI	GCGC	2 cut(s)	6, 309
AsuHPI	GGTGA	2 cut(s)	224, 472
AvaI	CYCGRG	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	2 cut(s)	204, 209
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	276
BmeT110I	CYCGRG	1 cut(s)	497
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	124, 318, 343
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	2 cut(s)	18, 354
BsaBI	GATNNNNATC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	201, 487
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	4 cut(s)	6, 36, 256, 286
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	302
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	2 cut(s)	201, 487
BseGI	GGATG	3 cut(s)	139, 196, 309
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMI	GCAATG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	9, 252
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	6
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	316, 363
Bsp19I	CCATGG	1 cut(s)	487
BspACI	CCGC	1 cut(s)	431
BspCNI	CTCAG	2 cut(s)	10, 253
BspFNI	CGCG	1 cut(s)	6
BspPI	GGATC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	201, 487
BssMI	GATC	2 cut(s)	316, 363
BssT1I	CCWWGG	2 cut(s)	201, 487
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	3 cut(s)	129, 440, 484
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	18, 261, 354
BstDSI	CCRYGG	1 cut(s)	487
BstEII	GGTNACC	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	139, 196, 309
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 309
BstKTI	GATC	2 cut(s)	319, 366
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	316, 363
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	1 cut(s)	104
BstPI	GGTNACC	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	291
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BtgI	CCRYGG	1 cut(s)	487
BtgZI	GCGATG	1 cut(s)	392
BtsCI	GGATG	3 cut(s)	139, 196, 309
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	2 cut(s)	6, 309
CspCI	CAANNNNNGTGG	2 cut(s)	190, 225
CviAII	CATG	3 cut(s)	101, 326, 488
CviJI	RGCY	5 cut(s)	17, 112, 174, 193, 279
CviKI_1	RGCY	5 cut(s)	17, 112, 174, 193, 279
DdeI	CTNAG	3 cut(s)	18, 261, 354
DpnI	GATC	2 cut(s)	318, 365
DpnII	GATC	2 cut(s)	316, 363
EciI	GGCGGA	1 cut(s)	446
Ecl136II	GAGCTC	1 cut(s)	193
Eco130I	CCWWGG	2 cut(s)	201, 487
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	257
Eco53kI	GAGCTC	1 cut(s)	193
Eco88I	CYCGRG	1 cut(s)	497
Eco91I	GGTNACC	1 cut(s)	478
EcoICRI	GAGCTC	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	478
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	201, 487
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	2 cut(s)	201, 487
FaeI	CATG	3 cut(s)	104, 329, 491
FaiI	YATR	9 cut(s)	10, 12, 102, 177, 287, 300, 327, 464, 489
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	100, 325, 487
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	3 cut(s)	146, 183, 296
FriOI	GRGCYC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	138
FspBI	CTAG	1 cut(s)	314
FspI	TGCGCA	1 cut(s)	308
GlaI	GCGC	2 cut(s)	5, 308
GluI	GCNGC	1 cut(s)	138
GsuI	CTGGAG	1 cut(s)	189
HapII	CCGG	1 cut(s)	414
HhaI	GCGC	2 cut(s)	6, 309
Hin1II	CATG	3 cut(s)	104, 329, 491
Hin6I	GCGC	2 cut(s)	4, 307
HinP1I	GCGC	2 cut(s)	4, 307
HindIII	AAGCTT	1 cut(s)	110
HpaII	CCGG	1 cut(s)	414
HphI	GGTGA	2 cut(s)	224, 472
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	260, 497
HpyAV	CCTTC	2 cut(s)	278, 354
HpyCH4III	ACNGT	3 cut(s)	129, 440, 484
HpyCH4V	TGCA	2 cut(s)	140, 462
HpyF3I	CTNAG	3 cut(s)	18, 261, 354
Hsp92II	CATG	3 cut(s)	104, 329, 491
HspAI	GCGC	2 cut(s)	4, 307
Kzo9I	GATC	2 cut(s)	316, 363
LmnI	GCTCC	2 cut(s)	14, 198
LpnPI	CCDG	8 cut(s)	33, 153, 261, 273, 288, 316, 413, 427
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	3 cut(s)	124, 318, 343
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	478
MalI	GATC	2 cut(s)	318, 365
MboI	GATC	2 cut(s)	316, 363
MboII	GAAGA	2 cut(s)	196, 358
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	5 cut(s)	178, 321, 380, 386, 402
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	7 cut(s)	13, 100, 164, 282, 385, 463, 469
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	487
NdeII	GATC	2 cut(s)	316, 363
NlaIII	CATG	3 cut(s)	104, 329, 491
NmuCI	GTSAC	1 cut(s)	478
NsbI	TGCGCA	1 cut(s)	308
NspI	RCATGY	1 cut(s)	104
PctI	GAATGC	1 cut(s)	91
PkrI	GCNGC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	195
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	316, 363
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	19, 24, 114, 195, 474, 480
SfaNI	GCATC	3 cut(s)	124, 318, 343
SfcI	CTRYAG	1 cut(s)	291
Sse9I	AATT	5 cut(s)	178, 321, 380, 386, 402
SsiI	CCGC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	195
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	201, 487
TaaI	ACNGT	3 cut(s)	129, 440, 484
TaqI	TCGA	2 cut(s)	377, 424
TasI	AATT	5 cut(s)	178, 321, 380, 386, 402
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	4 cut(s)	98, 314, 395, 464
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.