Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

8654424 .. 8656524

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G108000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCTACTCTTAATCTTAAGTTTGAGCCAGATGCTGCAGGGGTTTCAACACCATTTTCAAATTCACCGCCAACTCATTACATCCTAAAAGTAGAGTCCTTTTCGTCTTTAGAGAGGCATTCAGCAGGTAGATTTGAGTCAGGGCAGTTCGATGCTGGAGGATACAAATGGAAACTGGCGGTGTACCCAAATGGATACAAGCAGAAGAATGTGGATGACCACATCTCTGTCTACTTAGAAATGGCTGGAGCAGATTCACTTCAGACTGGTTGGGAAGTATTTGTTGAGTTTAGATTGTTTTTACTTGATCAGAATAAGGGAATCTACTTGGTTCTTCAGGATGCTAATCTAAACAAGATGTGCTTACACGGGGCGATGTTTGAAGTGGGTTTCGATAGAGTTATCCCTCTGAATGCATTTACTGATTCTTCCAACGGCTATCTGATTAATGATACTTGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAGCTGGCAAAGCAGAACGCCTATACGCGATCAACAGTGCTATGTACAAGCATCCTTGGAAAGTTTATATACCTTTAAAGTTCAGACCTGAACTCTTGGAATCAAAGCCATTCTTTGCTGGAGGACAGACATGGAAGATACGTCTCTATCCCAAGGGATATGACAAAGGAAAGGATACTCATGTTTCTCTTTACTTAACATTGGCTAATCCAGAACCTGCCTCCAAAATACTTACAGAGTTTACTCTGCGCATCGTTGATCAATTGAATGGCAAGCATTTTTTTTGTAAAGGTTGTCAATGGTTCAGTGCCTTGACTCCCTCTTTCGGTTTCTCTAGGTTGATTGCATTTGACATTTTGAAACAGTTAGACAAGGGTTTTTTGGTTCAGAGCTATTGCTTAGTGGAGGCAGAGGTCAATGTCCATGGAATTTTTACAGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

314

Amino Acids

35.41

Weight (kDa)

8.1

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	746
Acc36I	ACCTGC	2 cut(s)	116, 721
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	1 cut(s)	524
AciI	CCGC	2 cut(s)	68, 179
AcsI	RAATTY	2 cut(s)	61, 924
AcuI	CTGAAG	2 cut(s)	245, 320
AfaI	GTAC	2 cut(s)	185, 542
AfiI	CCNNNNNNNGG	1 cut(s)	821
AflII	CTTAAG	1 cut(s)	17
AgsI	TTSAA	5 cut(s)	48, 60, 383, 763, 856
AluBI	AGCT	2 cut(s)	500, 888
AluI	AGCT	2 cut(s)	500, 888
Alw26I	GTCTC	1 cut(s)	644
AlwNI	CAGNNNCTG	2 cut(s)	35, 713
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	2 cut(s)	61, 924
AseI	ATTAAT	1 cut(s)	447
AspLEI	GCGC	1 cut(s)	747
AsuHPI	GGTGA	1 cut(s)	57
BaeI	ACNNNNGTAYC	4 cut(s)	444, 477, 663, 696
BbvI	GCAGC	1 cut(s)	22
BceAI	ACGGC	1 cut(s)	451
BciVI	GTATCC	3 cut(s)	155, 188, 664
BclI	TGATCA	2 cut(s)	307, 754
BcoDI	GTCTC	1 cut(s)	644
BfaI	CTAG	1 cut(s)	831
BfmI	CTRYAG	1 cut(s)	36
BfrI	CTTAAG	1 cut(s)	17
BfuAI	ACCTGC	2 cut(s)	116, 721
BfuI	GTATCC	3 cut(s)	155, 188, 664
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BmiI	GGNNCC	1 cut(s)	469
BmsI	GCATC	5 cut(s)	22, 142, 331, 556, 756
BpmI	CTGGAG	3 cut(s)	177, 267, 636
BsaBI	GATNNNNATC	1 cut(s)	345
BsaJI	CCNNGG	4 cut(s)	471, 551, 648, 919
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	1 cut(s)	821
Bse1I	ACTGG	2 cut(s)	180, 271
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	4 cut(s)	471, 551, 648, 919
BseGI	GGATG	4 cut(s)	81, 220, 346, 547
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	180, 271
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	524
BslI	CCNNNNNNNGG	1 cut(s)	821
BsmAI	GTCTC	1 cut(s)	644
BsmBI	CGTCTC	1 cut(s)	644
BsmI	GAATGC	2 cut(s)	118, 418
Bsp1407I	TGTACA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	307, 525, 754
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	2 cut(s)	68, 179
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	469
BspMAI	CTGCAG	1 cut(s)	40
BspMI	ACCTGC	2 cut(s)	116, 721
BspQI	GCTCTTC	1 cut(s)	490
BspTI	CTTAAG	1 cut(s)	17
BsrGI	TGTACA	1 cut(s)	540
BsrI	ACTGG	2 cut(s)	180, 271
BssECI	CCNNGG	4 cut(s)	471, 551, 648, 919
BssMI	GATC	3 cut(s)	307, 525, 754
BssT1I	CCWWGG	3 cut(s)	551, 648, 919
Bst4CI	ACNGT	2 cut(s)	533, 861
Bst6I	CTCTTC	1 cut(s)	490
BstAFI	CTTAAG	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	540
BstC8I	GCNNGC	2 cut(s)	502, 770
BstDEI	CTNAG	2 cut(s)	235, 895
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	4 cut(s)	81, 220, 346, 547
BstFNI	CGCG	1 cut(s)	524
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	3 cut(s)	310, 528, 757
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	3 cut(s)	307, 525, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	22
BsuI	GTATCC	3 cut(s)	155, 188, 664
BtgI	CCRYGG	1 cut(s)	919
BtgZI	GCGATG	1 cut(s)	389
BtsCI	GGATG	4 cut(s)	81, 220, 346, 547
BtsIMutI	CAGTG	2 cut(s)	538, 808
BveI	ACCTGC	2 cut(s)	116, 721
Cac8I	GCNNGC	2 cut(s)	502, 770
CaiI	CAGNNNCTG	2 cut(s)	35, 713
CfoI	GCGC	1 cut(s)	747
Csp6I	GTAC	2 cut(s)	184, 541
CviAII	CATG	3 cut(s)	627, 677, 920
CviJI	RGCY	9 cut(s)	5, 28, 245, 438, 470, 500, 604, 701, 888
CviKI_1	RGCY	9 cut(s)	5, 28, 245, 438, 470, 500, 604, 701, 888
CviQI	GTAC	2 cut(s)	184, 541
DdeI	CTNAG	2 cut(s)	235, 895
DpnI	GATC	3 cut(s)	309, 527, 756
DpnII	GATC	3 cut(s)	307, 525, 754
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Eco130I	CCWWGG	3 cut(s)	551, 648, 919
Eco57I	CTGAAG	2 cut(s)	245, 320
EcoT14I	CCWWGG	3 cut(s)	551, 648, 919
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	3 cut(s)	551, 648, 919
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	3 cut(s)	630, 680, 923
FaiI	YATR	8 cut(s)	520, 539, 564, 566, 628, 657, 678, 921
FalI	AAGNNNNNCTT	4 cut(s)	347, 379, 593, 625
FatI	CATG	3 cut(s)	626, 676, 919
FbaI	TGATCA	2 cut(s)	307, 754
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	4 cut(s)	68, 227, 353, 534
Fsp4HI	GCNGC	1 cut(s)	36
FspBI	CTAG	1 cut(s)	831
FspI	TGCGCA	1 cut(s)	746
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	1 cut(s)	36
GsuI	CTGGAG	3 cut(s)	177, 267, 636
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	3 cut(s)	630, 680, 923
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HinfI	GANTC	7 cut(s)	95, 137, 254, 321, 425, 596, 811
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	3 cut(s)	184, 232, 738
Hpy188I	TCNGA	6 cut(s)	264, 312, 411, 444, 581, 885
Hpy188III	TCNNGA	2 cut(s)	338, 707
Hpy8I	GTNNAC	3 cut(s)	184, 232, 738
HpyCH4III	ACNGT	2 cut(s)	533, 861
HpyCH4IV	ACGT	1 cut(s)	637
HpyCH4V	TGCA	3 cut(s)	38, 416, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	506
HpyF3I	CTNAG	2 cut(s)	235, 895
HpySE526I	ACGT	1 cut(s)	637
Hsp92II	CATG	3 cut(s)	630, 680, 923
HspAI	GCGC	1 cut(s)	745
Ksp22I	TGATCA	2 cut(s)	307, 754
Kzo9I	GATC	3 cut(s)	307, 525, 754
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	248, 467
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	5 cut(s)	22, 142, 331, 556, 756
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	1 cut(s)	637
MalI	GATC	3 cut(s)	309, 527, 756
MboI	GATC	3 cut(s)	307, 525, 754
MboII	GAAGA	5 cut(s)	217, 326, 420, 507, 643
MfeI	CAATTG	1 cut(s)	758
MluCI	AATT	3 cut(s)	61, 758, 924
MlyI	GAGTC	3 cut(s)	104, 146, 805
MmeI	TCCRAC	1 cut(s)	456
MnlI	CCTC	9 cut(s)	108, 152, 417, 466, 611, 727, 826, 895, 901
Mph1103I	ATGCAT	1 cut(s)	418
MseI	TTAA	5 cut(s)	12, 18, 447, 572, 692
MspCI	CTTAAG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	758
Mva1269I	GAATGC	2 cut(s)	118, 418
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	506
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	3 cut(s)	307, 525, 754
NlaIII	CATG	3 cut(s)	630, 680, 923
NlaIV	GGNNCC	1 cut(s)	469
NmeAIII	GCCGAG	1 cut(s)	496
NsbI	TGCGCA	1 cut(s)	746
NsiI	ATGCAT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	490
PctI	GAATGC	2 cut(s)	118, 418
PfeI	GAWTC	4 cut(s)	254, 321, 425, 596
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	3 cut(s)	103, 145, 805
PpsI	GAGTC	3 cut(s)	103, 145, 805
PshBI	ATTAAT	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	469
PstI	CTGCAG	1 cut(s)	40
PstNI	CAGNNNCTG	2 cut(s)	35, 713
RsaI	GTAC	2 cut(s)	185, 542
RsaNI	GTAC	2 cut(s)	184, 541
SapI	GCTCTTC	1 cut(s)	490
SaqAI	TTAA	5 cut(s)	12, 18, 447, 572, 692
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	307, 525, 754
SchI	GAGTC	3 cut(s)	104, 146, 805
SfaNI	GCATC	5 cut(s)	22, 142, 331, 556, 756
SfcI	CTRYAG	1 cut(s)	36
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	3 cut(s)	61, 758, 924
SsiI	CCGC	2 cut(s)	68, 179
SspMI	CTAG	1 cut(s)	831
StyI	CCWWGG	3 cut(s)	551, 648, 919
TaaI	ACNGT	2 cut(s)	533, 861
TaiI	ACGT	1 cut(s)	640
TaqI	TCGA	2 cut(s)	150, 393
TasI	AATT	3 cut(s)	61, 758, 924
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	4 cut(s)	254, 321, 425, 596
Tru1I	TTAA	5 cut(s)	12, 18, 447, 572, 692
Tru9I	TTAA	5 cut(s)	12, 18, 447, 572, 692
TscAI	CASTG	2 cut(s)	538, 808
TseI	GCWGC	1 cut(s)	35
TspRI	CASTG	2 cut(s)	538, 808
Vha464I	CTTAAG	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	447
XapI	RAATTY	2 cut(s)	61, 924
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	831
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.