Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

52142170 .. 52143803

Gene Structure 1634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39571

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCATATATAATTAATAATAGAACTAAGTTGAACTCGGCGCCTAATACTAGCTTGATGGTTGCAGGAATTTTAAAATCATTTTCAGATTCACCGCCAACTCATTACACTGTAAAAATAGAGTTATTTTCGATGATAACTGAACTTTTTTCAGAGGATGGATATGAATCATCACAATTTGAAGCCGGAGGATACAAATGGAAACTGGTGTTGTACCCAAATGGAAACATGAGGAGGAATGTGGGAGACCACATCTCTATCTACTTGGTAATTGCTGGAACAGATTCACTTCCAACTGGTTGGGAGGTATATGTTGATTTCAGATTGTTTTTGCTCGATCAGAATAAGAAAGCCTACTCGGTTTTTGAAGATGCTTTTACAAAGCAAAAGTGCTTTAATGGAGCTATGCTTGATGCGGCTGGTTTTGATAAACTTATCCCCATTAAAGATTTTACTGATGTTTCCAATGGATATCTTATTGATGATACATGCGTGTATGGAGCTGAGGTCTTTGTTTGTAAAGAAAGGAGAACAGGGAAAGGAGAGTGTCTATCAAGGATAAGAGATGCCTCCGTGTACAAGCACGTTTGGAAGATAGATAATTTTTCAGAATTGGACGCTGAATCCTATTCATCGGAACCCTTTAATGCTGGAGGCTATGAATGGAAGATAAAGCTCTATCCCAAGGGAACCGGTGATGGAAAGGATAGTCATCTTTCTCTGTTTTTCATATTGGCAAATCCTGAGACCCTTCCTCCTGGCTCTAGTATATTTGCAGATTATACATCGCGCATCCTAGATCAGATTCATGACAGGCATCACTCTAAAAGGGCAACTAATGGCAGGATCTTCAGTACCTTGCATCCGAGTTGGGGTTACGATAAATTCATTGCACTGGAGATGTTCAGTTCGGCAGACAAGGGTTTTTTGATGAACGACACTTGCATAGTGGAGGTAGAGGTCACTGTCCGTGGAATTACTGGAGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

330

Amino Acids

37.17

Weight (kDa)

5.66

Isoelectric Point (pI)

26.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	35 - 170	2.9e-33	MATH domain
MATH	PF00917	51 - 172	1.1e-11	MATH domain
MATH_2	PF22486	194 - 321	1.3e-36	MATH domain
MATH	PF00917	199 - 323	3.8e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccII	CGCG	1 cut(s)	790
AciI	CCGC	2 cut(s)	95, 416
AclWI	GGATC	1 cut(s)	854
AcsI	RAATTY	2 cut(s)	69, 884
AcuI	CTGAAG	1 cut(s)	835
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	3 cut(s)	215, 578, 856
AfiI	CCNNNNNNNGG	1 cut(s)	872
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	3 cut(s)	34, 182, 368
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	4 cut(s)	54, 404, 503, 676
AluI	AGCT	4 cut(s)	54, 404, 503, 676
Alw26I	GTCTC	2 cut(s)	240, 740
AlwI	GGATC	1 cut(s)	854
ApoI	RAATTY	2 cut(s)	69, 884
AseI	ATTAAT	1 cut(s)	15
AsiGI	ACCGGT	1 cut(s)	692
Asp700I	GAANNNNTTC	1 cut(s)	283
AspLEI	GCGC	2 cut(s)	43, 792
AsuHPI	GGTGA	2 cut(s)	84, 707
BaeI	ACNNNNGTAYC	2 cut(s)	477, 510
BanI	GGYRCC	1 cut(s)	40
BbvCI	CCTCAGC	1 cut(s)	504
BccI	CCATC	3 cut(s)	52, 152, 692
BciT130I	CCWGG	1 cut(s)	759
BciVI	GTATCC	1 cut(s)	185
BcoDI	GTCTC	2 cut(s)	240, 740
BfaI	CTAG	3 cut(s)	51, 765, 797
BfmI	CTRYAG	1 cut(s)	989
BfoI	RGCGCY	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
Bme1390I	CCNGG	1 cut(s)	759
BmiI	GGNNCC	3 cut(s)	42, 639, 691
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	6 cut(s)	361, 403, 556, 801, 826, 871
BpmI	CTGGAG	2 cut(s)	672, 917
Bpu10I	CCTNAGC	1 cut(s)	504
BsaBI	GATNNNNATC	2 cut(s)	166, 711
BsaHI	GRCGYC	1 cut(s)	41
BsaI	GGTCTC	2 cut(s)	240, 740
BsaJI	CCNNGG	2 cut(s)	684, 970
BsaWI	WCCGGW	1 cut(s)	692
BsaXI	ACNNNNNCTCC	4 cut(s)	492, 522, 739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse118I	RCCGGY	1 cut(s)	692
Bse1I	ACTGG	4 cut(s)	210, 301, 900, 985
Bse3DI	GCAATG	1 cut(s)	888
Bse8I	GATNNNNATC	2 cut(s)	166, 711
BseBI	CCWGG	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	684, 970
BseGI	GGATG	3 cut(s)	163, 792, 862
BseJI	GATNNNNATC	2 cut(s)	166, 711
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	2 cut(s)	495, 735
BseNI	ACTGG	4 cut(s)	210, 301, 900, 985
BseRI	GAGGAG	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	790
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	692
BsiSI	CCGG	2 cut(s)	186, 693
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	240, 740
Bso31I	GGTCTC	2 cut(s)	240, 740
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	3 cut(s)	337, 799, 846
BspACI	CCGC	2 cut(s)	95, 416
BspCNI	CTCAG	2 cut(s)	496, 736
BspFNI	CGCG	1 cut(s)	790
BspHI	TCATGA	1 cut(s)	808
BspLI	GGNNCC	3 cut(s)	42, 639, 691
BspPI	GGATC	1 cut(s)	854
BspT107I	GGYRCC	1 cut(s)	40
BspTNI	GGTCTC	2 cut(s)	240, 740
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	1 cut(s)	692
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	4 cut(s)	210, 301, 900, 985
BssAI	RCCGGY	1 cut(s)	692
BssECI	CCNNGG	2 cut(s)	684, 970
BssMI	GATC	3 cut(s)	337, 799, 846
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	684
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	2 cut(s)	112, 967
BstACI	GRCGYC	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	576
BstDEI	CTNAG	3 cut(s)	27, 504, 744
BstDSI	CCRYGG	1 cut(s)	970
BstF5I	GGATG	3 cut(s)	163, 792, 862
BstFNI	CGCG	1 cut(s)	790
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	2 cut(s)	43, 792
BstKTI	GATC	3 cut(s)	340, 802, 849
BstMAI	GTCTC	2 cut(s)	240, 740
BstMBI	GATC	3 cut(s)	337, 799, 846
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	757
BstSFI	CTRYAG	1 cut(s)	989
BstUI	CGCG	1 cut(s)	790
BstX2I	RGATCY	1 cut(s)	846
BstXI	CCANNNNNNTGG	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	970
BtgZI	GCGATG	1 cut(s)	771
BtsCI	GGATG	3 cut(s)	163, 792, 862
BtsIMutI	CAGTG	3 cut(s)	108, 893, 963
CciI	TCATGA	1 cut(s)	808
CfoI	GCGC	2 cut(s)	43, 792
Cfr10I	RCCGGY	1 cut(s)	692
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	214, 577, 855
CspAI	ACCGGT	1 cut(s)	692
CviAII	CATG	3 cut(s)	229, 489, 809
CviJI	RGCY	9 cut(s)	54, 185, 353, 404, 419, 503, 657, 676, 762
CviKI_1	RGCY	9 cut(s)	54, 185, 353, 404, 419, 503, 657, 676, 762
CviQI	GTAC	3 cut(s)	214, 577, 855
DdeI	CTNAG	3 cut(s)	27, 504, 744
DinI	GGCGCC	1 cut(s)	42
DpnI	GATC	3 cut(s)	339, 801, 848
DpnII	GATC	3 cut(s)	337, 799, 846
DraI	TTTAAA	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	684
Eco31I	GGTCTC	2 cut(s)	240, 740
Eco32I	GATATC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	835
EcoRII	CCWGG	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	1 cut(s)	684
EgeI	GGCGCC	1 cut(s)	42
EheI	GGCGCC	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	684
FaeI	CATG	3 cut(s)	232, 492, 812
FatI	CATG	3 cut(s)	228, 488, 808
Fnu4HI	GCNGC	1 cut(s)	417
FokI	GGATG	3 cut(s)	170, 779, 849
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	3 cut(s)	51, 765, 797
GlaI	GCGC	2 cut(s)	42, 791
GluI	GCNGC	1 cut(s)	417
GsuI	CTGGAG	2 cut(s)	672, 917
HaeII	RGCGCY	1 cut(s)	44
HapII	CCGG	2 cut(s)	186, 693
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	43, 792
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	232, 492, 812
Hin6I	GCGC	2 cut(s)	41, 790
HinP1I	GCGC	2 cut(s)	41, 790
HinfI	GANTC	5 cut(s)	89, 167, 284, 623, 805
HpaII	CCGG	2 cut(s)	186, 693
HphI	GGTGA	2 cut(s)	84, 707
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	8 cut(s)	88, 154, 323, 342, 610, 637, 804, 867
Hpy188III	TCNNGA	2 cut(s)	743, 809
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	2 cut(s)	112, 967
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	65, 776, 862, 893, 945
HpyF3I	CTNAG	3 cut(s)	27, 504, 744
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	232, 492, 812
HspAI	GCGC	2 cut(s)	41, 790
KasI	GGCGCC	1 cut(s)	40
Kzo9I	GATC	3 cut(s)	337, 799, 846
LmnI	GCTCC	2 cut(s)	401, 500
LweI	GCATC	6 cut(s)	361, 403, 556, 801, 826, 871
MaeI	CTAG	3 cut(s)	51, 765, 797
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	875, 961
MalI	GATC	3 cut(s)	339, 801, 848
MboI	GATC	3 cut(s)	337, 799, 846
MboII	GAAGA	4 cut(s)	380, 604, 679, 841
MflI	RGATCY	1 cut(s)	846
MluCI	AATT	8 cut(s)	12, 69, 176, 270, 601, 611, 884, 975
Mly113I	GGCGCC	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	317
MroXI	GAANNNNTTC	1 cut(s)	283
MseI	TTAA	5 cut(s)	15, 74, 396, 444, 645
MspI	CCGG	2 cut(s)	186, 693
MspR9I	CCNGG	1 cut(s)	759
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	790
NarI	GGCGCC	1 cut(s)	41
NdeII	GATC	3 cut(s)	337, 799, 846
NlaIII	CATG	3 cut(s)	232, 492, 812
NlaIV	GGNNCC	3 cut(s)	42, 639, 691
NmeAIII	GCCGAG	1 cut(s)	17
NmuCI	GTSAC	1 cut(s)	961
NspI	RCATGY	1 cut(s)	492
PagI	TCATGA	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	5 cut(s)	89, 167, 284, 623, 805
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	418
PluTI	GGCGCC	1 cut(s)	44
PshBI	ATTAAT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	3 cut(s)	42, 639, 691
PsuI	RGATCY	1 cut(s)	846
RsaI	GTAC	3 cut(s)	215, 578, 856
RsaNI	GTAC	3 cut(s)	214, 577, 855
SaqAI	TTAA	5 cut(s)	15, 74, 396, 444, 645
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	337, 799, 846
ScrFI	CCNGG	1 cut(s)	759
SfaNI	GCATC	6 cut(s)	361, 403, 556, 801, 826, 871
SfcI	CTRYAG	1 cut(s)	989
SfoI	GGCGCC	1 cut(s)	42
Sse9I	AATT	8 cut(s)	12, 69, 176, 270, 601, 611, 884, 975
SsiI	CCGC	2 cut(s)	95, 416
SspDI	GGCGCC	1 cut(s)	40
SspMI	CTAG	3 cut(s)	51, 765, 797
StyD4I	CCNGG	1 cut(s)	757
StyI	CCWWGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	112, 967
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	131, 336
TasI	AATT	8 cut(s)	12, 69, 176, 270, 601, 611, 884, 975
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	5 cut(s)	89, 167, 284, 623, 805
Tru1I	TTAA	5 cut(s)	15, 74, 396, 444, 645
Tru9I	TTAA	5 cut(s)	15, 74, 396, 444, 645
TscAI	CASTG	3 cut(s)	115, 900, 970
TseFI	GTSAC	1 cut(s)	961
Tsp45I	GTSAC	1 cut(s)	961
TspDTI	ATGAA	7 cut(s)	180, 621, 675, 718, 797, 877, 947
TspGWI	ACGGA	2 cut(s)	562, 959
TspRI	CASTG	3 cut(s)	115, 900, 970
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	2 cut(s)	69, 884
XceI	RCATGY	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	283
XspI	CTAG	3 cut(s)	51, 765, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.