Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

8617463 .. 8621760

Gene Structure 4298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGACTACCCTTATATTTGACCAAGATGGTCTTTCGAGATCACTTTCAAATTCACCACCAACTCATTACACTCTAACAATAGAGTCATTTTCGATGCTAACTGAAAATTCAGTGGATACATATGAGTCTGGGGAGTTTGATGCTGGAGGATACAAATGGAAACTGGTGGTGTACCCAAATGGAAACACGAAGAAGAATGTAGAAGACCACATCTCTGTCTACTTAAAAATGGCAGAAGCAAATTCACTTCAGAGTGGTTGGGAAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATCTACTTGGTTCTTCAGGATGCTAATATGAACAAGATGTGCTTGCACGGGGCGATGCTCCAAGTGGGTTTTGATAGAGTAATCCCTCTGAAAGCATTTTCTGTTGCTTCCAATGGCTATCTCATTGATGATACTTGTGTTTTTGGAGCCGAGGTCTTCGTTTGCAAAGAAAGAAGAGCGGGCAAGGCAGAGTGTCTGTCAAGAATCAAAAAGGCTTTTATGAACAAGCATTGTTGGAAGATTGAGAGTTTTTCAACGTTCAAATCCCAACGCTTGCAATCTGAACTATTCACTGCAGGAGGGCAGAAATGGAAGATAGAGCTCTATCCCAAGGGAGATGACCATGGAGAGAATACTCATGTTTCTGTTTACTTAAGATTAGCTAATCCAGAAAAGCTATCTCCTGTCTCCCAATTACTTATAGAGTATACTCTGCGCATCGTAAATCAATTGGACGGGAAGGATAAGAGTCGGAAATCGAATCATACATGGTTCAGTGCCTCGAGTCCGTCTTGGGGTTGGCCTTGTTTCATTAAATGGGACAGTTTCAAAATGTTAGACAACGGTTATTTGGTGAAGAATACTTGCTTGGTCGAGGCCGAGGTCACTGTCCATGGAATTGCTAAAGCATTAGAGCCAACTGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

320

Amino Acids

36.12

Weight (kDa)

6.46

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	488
AccI	GTMKAC	2 cut(s)	219, 737
AciI	CCGC	1 cut(s)	488
AclI	AACGTT	1 cut(s)	566
AcsI	RAATTY	3 cut(s)	49, 106, 241
AcuI	CTGAAG	2 cut(s)	233, 308
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	824
AflII	CTTAAG	1 cut(s)	682
AgsI	TTSAA	4 cut(s)	48, 564, 571, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	881, 913
AluBI	AGCT	3 cut(s)	631, 692, 706
AluI	AGCT	3 cut(s)	631, 692, 706
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	1 cut(s)	721
Ama87I	CYCGRG	1 cut(s)	811
AoxI	GGCC	2 cut(s)	830, 906
ApoI	RAATTY	3 cut(s)	49, 106, 241
AspLEI	GCGC	1 cut(s)	747
AsuHPI	GGTGA	2 cut(s)	45, 895
AvaI	CYCGRG	1 cut(s)	811
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BanII	GRGCYC	1 cut(s)	633
BbsI	GAAGAC	2 cut(s)	210, 457
Bbv12I	GWGCWC	1 cut(s)	633
BccI	CCATC	1 cut(s)	20
BciVI	GTATCC	2 cut(s)	109, 143
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	721
BfmI	CTRYAG	1 cut(s)	603
BfrI	CTTAAG	1 cut(s)	682
BfuI	GTATCC	2 cut(s)	109, 143
BmeT110I	CYCGRG	1 cut(s)	811
BmiI	GGNNCC	1 cut(s)	457
BmsI	GCATC	5 cut(s)	84, 130, 319, 354, 756
BpiI	GAAGAC	2 cut(s)	210, 457
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	5 cut(s)	459, 639, 652, 909, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse1I	ACTGG	1 cut(s)	168
BseDI	CCNNGG	5 cut(s)	459, 639, 652, 909, 922
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseNI	ACTGG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	832, 908
BsiHKAI	GWGCWC	1 cut(s)	633
BsiHKCI	CYCGRG	1 cut(s)	811
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	2 cut(s)	832, 908
BsoBI	CYCGRG	1 cut(s)	811
Bsp1286I	GDGCHC	1 cut(s)	633
Bsp143I	GATC	2 cut(s)	38, 295
Bsp19I	CCATGG	2 cut(s)	652, 922
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	2 cut(s)	832, 908
BspLI	GGNNCC	1 cut(s)	457
BspMAI	CTGCAG	1 cut(s)	607
BspQI	GCTCTTC	1 cut(s)	478
BspTI	CTTAAG	1 cut(s)	682
BsrBI	CCGCTC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	5 cut(s)	459, 639, 652, 909, 922
BssMI	GATC	2 cut(s)	38, 295
BssNAI	GTATAC	1 cut(s)	738
BssT1I	CCWWGG	3 cut(s)	639, 652, 922
Bst1107I	GTATAC	1 cut(s)	738
Bst4CI	ACNGT	3 cut(s)	854, 875, 919
Bst6I	CTCTTC	1 cut(s)	478
BstAFI	CTTAAG	1 cut(s)	682
BstC8I	GCNNGC	3 cut(s)	353, 490, 584
BstDSI	CCRYGG	2 cut(s)	652, 922
BstF5I	GGATG	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	2 cut(s)	41, 298
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	2 cut(s)	38, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	603
BstV2I	GAAGAC	2 cut(s)	210, 457
BstZ17I	GTATAC	1 cut(s)	738
BsuI	GTATCC	2 cut(s)	109, 143
BsuRI	GGCC	2 cut(s)	832, 908
BtgI	CCRYGG	2 cut(s)	652, 922
BtgZI	GCGATG	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	4 cut(s)	117, 600, 811, 915
Cac8I	GCNNGC	3 cut(s)	353, 490, 584
CfoI	GCGC	1 cut(s)	747
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	653, 668, 798, 923
CviJI	RGCY	9 cut(s)	426, 458, 524, 631, 692, 706, 832, 908, 946
CviKI_1	RGCY	9 cut(s)	426, 458, 524, 631, 692, 706, 832, 908, 946
CviQI	GTAC	1 cut(s)	172
DpnI	GATC	2 cut(s)	40, 297
DpnII	GATC	2 cut(s)	38, 295
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	3 cut(s)	639, 652, 922
Eco24I	GRGCYC	1 cut(s)	633
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	233, 308
Eco88I	CYCGRG	1 cut(s)	811
EcoICRI	GAGCTC	1 cut(s)	631
EcoT14I	CCWWGG	3 cut(s)	639, 652, 922
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	3 cut(s)	639, 652, 922
FaeI	CATG	4 cut(s)	656, 671, 801, 926
FalI	AAGNNNNNCTT	4 cut(s)	15, 47, 335, 367
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	4 cut(s)	652, 667, 797, 922
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	2 cut(s)	219, 737
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	633
FspI	TGCGCA	1 cut(s)	746
GlaI	GCGC	1 cut(s)	746
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	832, 908
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	4 cut(s)	656, 671, 801, 926
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HinfI	GANTC	7 cut(s)	83, 125, 309, 513, 778, 790, 814
HphI	GGTGA	2 cut(s)	45, 895
Hpy166II	GTNNAC	4 cut(s)	172, 220, 679, 738
Hpy188I	TCNGA	5 cut(s)	252, 300, 399, 592, 783
Hpy188III	TCNNGA	4 cut(s)	36, 326, 510, 698
Hpy8I	GTNNAC	4 cut(s)	172, 220, 679, 738
HpyAV	CCTTC	1 cut(s)	763
HpyCH4III	ACNGT	3 cut(s)	854, 875, 919
HpyCH4IV	ACGT	1 cut(s)	566
HpyCH4V	TGCA	4 cut(s)	355, 474, 586, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpySE526I	ACGT	1 cut(s)	566
Hsp92II	CATG	4 cut(s)	656, 671, 801, 926
HspAI	GCGC	1 cut(s)	745
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	38, 295
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	2 cut(s)	372, 455
LpnPI	CCDG	7 cut(s)	114, 129, 149, 311, 591, 711, 726
LweI	GCATC	5 cut(s)	84, 130, 319, 354, 756
MaeII	ACGT	1 cut(s)	566
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	2 cut(s)	40, 297
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	2 cut(s)	38, 295
MboII	GAAGA	9 cut(s)	202, 205, 215, 314, 457, 495, 559, 634, 898
MfeI	CAATTG	1 cut(s)	758
MhlI	GDGCHC	1 cut(s)	633
MluCI	AATT	6 cut(s)	49, 106, 241, 722, 758, 927
MlyI	GAGTC	4 cut(s)	92, 134, 787, 823
MmeI	TCCRAC	2 cut(s)	524, 761
MnlI	CCTC	7 cut(s)	140, 405, 454, 602, 820, 898, 904
MseI	TTAA	4 cut(s)	224, 683, 843, 958
MspCI	CTTAAG	1 cut(s)	682
MunI	CAATTG	1 cut(s)	758
MwoI	GCNNNNNNNGC	1 cut(s)	494
NcoI	CCATGG	2 cut(s)	652, 922
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	2 cut(s)	38, 295
NlaIII	CATG	4 cut(s)	656, 671, 801, 926
NlaIV	GGNNCC	1 cut(s)	457
NmeAIII	GCCGAG	2 cut(s)	484, 934
NmuCI	GTSAC	1 cut(s)	913
NsbI	TGCGCA	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	478
PfeI	GAWTC	3 cut(s)	309, 513, 790
PleI	GAGTC	4 cut(s)	91, 133, 786, 822
PpsI	GAGTC	4 cut(s)	91, 133, 786, 822
Psp124BI	GAGCTC	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	566
PspN4I	GGNNCC	1 cut(s)	457
PspXI	VCTCGAGB	1 cut(s)	811
PstI	CTGCAG	1 cut(s)	607
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	224, 683, 843, 958
Sau3AI	GATC	2 cut(s)	38, 295
SchI	GAGTC	4 cut(s)	92, 134, 787, 823
SduI	GDGCHC	1 cut(s)	633
SetI	ASST	6 cut(s)	465, 569, 633, 694, 708, 915
SfaNI	GCATC	5 cut(s)	84, 130, 319, 354, 756
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	811
SlaI	CTCGAG	1 cut(s)	811
SmlI	CTYRAG	2 cut(s)	682, 811
SmoI	CTYRAG	2 cut(s)	682, 811
Sse9I	AATT	6 cut(s)	49, 106, 241, 722, 758, 927
SsiI	CCGC	1 cut(s)	488
SstI	GAGCTC	1 cut(s)	633
StyI	CCWWGG	3 cut(s)	639, 652, 922
TaaI	ACNGT	3 cut(s)	854, 875, 919
TaiI	ACGT	1 cut(s)	569
TaqI	TCGA	5 cut(s)	35, 92, 788, 812, 903
TasI	AATT	6 cut(s)	49, 106, 241, 722, 758, 927
TfiI	GAWTC	3 cut(s)	309, 513, 790
Tru1I	TTAA	4 cut(s)	224, 683, 843, 958
Tru9I	TTAA	4 cut(s)	224, 683, 843, 958
TscAI	CASTG	4 cut(s)	117, 607, 811, 922
TseFI	GTSAC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	3 cut(s)	353, 545, 829
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	4 cut(s)	117, 607, 811, 922
Vha464I	CTTAAG	1 cut(s)	682
XapI	RAATTY	3 cut(s)	49, 106, 241
XhoI	CTCGAG	1 cut(s)	811
XmiI	GTMKAC	2 cut(s)	219, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.