Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

50500617 .. 50502113

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGATATGAATCGAAGGAGTTTGAAGCTGGAGGGTACAAATGGTGATTCTCATATTCTAGAGTCTAGACTTTTTCCATCTTATTTTATGTTCAACGAAACTGGTGTTTCACCCAAATGGAAACAAAAGAAGAATGTAAAAGACCACATCTCCCTCTACTTGGTAATAACTGGAACAGATTCACTAGATTGTAGTTGGGAAGTATATGTTGATTTCAGACTGTTTCTGCTCGATCAGAATAAGGGAAACTACTTGGTTTTTGAAGATGCTTTAACAAAGAAGAAATGCTTTCATGGGGCAATGCGTAGTGCAGGTTTCGATAAACTTATCCCCCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTCGACGATACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAAGAACAGGCAAAGGTGAGTGCCTAGCAAGGATGAAGGAAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCATTGGTTGCAGCATTTTATGAGTCTGAACAGTTCACTGCTGGGGGCTATAATTGGAAGATAAAGCTTTATCCTAAGGGATGTGGCGAAGCTAAGAACTGGTTCCGTCACTTCCGTGACAGTACAGTGGAAGCAGAGGTGACTGTCCATGGAATTTCTAAAGCACTATCGCAAACTAGTCCTCAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

231

Amino Acids

26.41

Weight (kDa)

8.39

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	42 - 134	1.3e-19	MATH domain
MATH	PF00917	44 - 136	7.9e-08	MATH domain
MATH_2	PF22486	159 - 200	3.8e-10	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	372
AcsI	RAATTY	2 cut(s)	497, 657
AfaI	GTAC	2 cut(s)	37, 628
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	2 cut(s)	380, 478
AgsI	TTSAA	4 cut(s)	25, 94, 263, 338
AhlI	ACTAGT	1 cut(s)	680
AleI	CACNNNNGTG	1 cut(s)	618
AluBI	AGCT	3 cut(s)	28, 571, 596
AluI	AGCT	3 cut(s)	28, 571, 596
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	2 cut(s)	497, 657
Asp700I	GAANNNNTTC	2 cut(s)	178, 605
AsuHPI	GGTGA	4 cut(s)	56, 102, 449, 655
AxyI	CCTNAGG	1 cut(s)	579
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	1 cut(s)	85
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	6 cut(s)	59, 66, 185, 368, 446, 681
BfuAI	ACCTGC	1 cut(s)	302
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	394, 608
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	9
BsaJI	CCNNGG	2 cut(s)	396, 652
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 384, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	3 cut(s)	106, 175, 608
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	9
BseDI	CCNNGG	2 cut(s)	396, 652
BseGI	GGATG	2 cut(s)	459, 590
BseJI	GATNNNNATC	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMI	GCAATG	1 cut(s)	306
BseNI	ACTGG	3 cut(s)	106, 175, 608
BseXI	GCAGC	1 cut(s)	527
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	652
BspLI	GGNNCC	2 cut(s)	394, 608
BspMI	ACCTGC	1 cut(s)	302
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	106, 175, 608
BssECI	CCNNGG	2 cut(s)	396, 652
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	652
Bst4CI	ACNGT	5 cut(s)	222, 537, 626, 631, 649
BstDEI	CTNAG	2 cut(s)	579, 597
BstDSI	CCRYGG	1 cut(s)	652
BstF5I	GGATG	2 cut(s)	459, 590
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstNSI	RCATGY	2 cut(s)	384, 482
BstV1I	GCAGC	1 cut(s)	527
Bsu36I	CCTNAGG	1 cut(s)	579
BtgI	CCRYGG	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	459, 590
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	540, 636
BveI	ACCTGC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	36, 627
CviAII	CATG	4 cut(s)	293, 381, 479, 653
CviJI	RGCY	6 cut(s)	28, 395, 464, 552, 571, 596
CviKI_1	RGCY	6 cut(s)	28, 395, 464, 552, 571, 596
CviQI	GTAC	2 cut(s)	36, 627
DdeI	CTNAG	2 cut(s)	579, 597
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	652
Eco81I	CCTNAGG	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	652
FaeI	CATG	4 cut(s)	296, 384, 482, 656
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	4 cut(s)	292, 380, 478, 652
FblI	GTMKAC	1 cut(s)	372
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	466, 597
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	6 cut(s)	59, 66, 185, 368, 446, 681
GluI	GCNGC	1 cut(s)	516
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	1 cut(s)	50
Hin1II	CATG	4 cut(s)	296, 384, 482, 656
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	5 cut(s)	10, 47, 62, 179, 527
HphI	GGTGA	4 cut(s)	56, 102, 449, 655
Hpy166II	GTNNAC	2 cut(s)	373, 540
Hpy188I	TCNGA	3 cut(s)	218, 237, 532
Hpy188III	TCNNGA	3 cut(s)	59, 66, 693
Hpy8I	GTNNAC	2 cut(s)	373, 540
Hpy99I	CGWCG	1 cut(s)	377
HpyAV	CCTTC	3 cut(s)	9, 451, 481
HpyCH4III	ACNGT	5 cut(s)	222, 537, 626, 631, 649
HpyCH4V	TGCA	3 cut(s)	311, 474, 515
HpyF3I	CTNAG	2 cut(s)	579, 597
Hsp92II	CATG	4 cut(s)	296, 384, 482, 656
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	7 cut(s)	14, 87, 156, 297, 414, 531, 589
Lsp1109I	GCAGC	1 cut(s)	527
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	6 cut(s)	59, 66, 185, 368, 446, 681
MaeIII	GTNAC	3 cut(s)	611, 620, 643
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	7 cut(s)	142, 275, 292, 350, 432, 435, 574
MluCI	AATT	3 cut(s)	497, 556, 657
MlyI	GAGTC	2 cut(s)	71, 536
MnlI	CCTC	6 cut(s)	25, 164, 391, 475, 634, 696
MroXI	GAANNNNTTC	2 cut(s)	178, 605
MseI	TTAA	1 cut(s)	272
MslI	CAYNNNNRTG	2 cut(s)	115, 618
NcoI	CCATGG	1 cut(s)	652
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	296, 384, 482, 656
NlaIV	GGNNCC	2 cut(s)	394, 608
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	3 cut(s)	611, 620, 643
NspI	RCATGY	2 cut(s)	384, 482
OliI	CACNNNNGTG	1 cut(s)	618
PciI	ACATGT	2 cut(s)	380, 478
PdmI	GAANNNNTTC	2 cut(s)	178, 605
PfeI	GAWTC	3 cut(s)	10, 47, 179
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	70, 535
PpsI	GAGTC	2 cut(s)	70, 535
PscI	ACATGT	2 cut(s)	380, 478
PspFI	CCCAGC	1 cut(s)	545
PspN4I	GGNNCC	2 cut(s)	394, 608
RsaI	GTAC	2 cut(s)	37, 628
RsaNI	GTAC	2 cut(s)	36, 627
RseI	CAYNNNNRTG	2 cut(s)	115, 618
SalI	GTCGAC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	1 cut(s)	232
SchI	GAGTC	2 cut(s)	71, 536
SetI	ASST	8 cut(s)	30, 316, 402, 439, 492, 573, 598, 645
SfaNI	GCATC	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	115, 618
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	3 cut(s)	497, 556, 657
SspMI	CTAG	6 cut(s)	59, 66, 185, 368, 446, 681
StyI	CCWWGG	1 cut(s)	652
TaaI	ACNGT	5 cut(s)	222, 537, 626, 631, 649
TaqI	TCGA	4 cut(s)	13, 231, 318, 372
TasI	AATT	3 cut(s)	497, 556, 657
TatI	WGTACW	1 cut(s)	626
TfiI	GAWTC	3 cut(s)	10, 47, 179
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TscAI	CASTG	2 cut(s)	547, 636
TseFI	GTSAC	3 cut(s)	611, 620, 643
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	3 cut(s)	611, 620, 643
TspDTI	ATGAA	4 cut(s)	23, 281, 470, 492
TspGWI	ACGGA	2 cut(s)	599, 608
TspRI	CASTG	2 cut(s)	547, 636
XapI	RAATTY	2 cut(s)	497, 657
XbaI	TCTAGA	2 cut(s)	58, 65
XceI	RCATGY	2 cut(s)	384, 482
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	2 cut(s)	178, 605
XspI	CTAG	6 cut(s)	59, 66, 185, 368, 446, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.