Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11134321 .. 11135958

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1143000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCTGATATATGCTTGCATCAACACTTTTCTGTTTCAGGGTTTTCGATATCATATTCAGATTCAGCTCCAACTCATTACTCTCTGAAAATCGGGTCATTTTCATGGCTAACCAAAATTTCAGTGGACAAATATGAGTCGGGAGAATTTGAAGCTGGAGGATACAAATGGAAACTAGTGCTCTACCCGAATGGAAACAAGAAGAAAAATGTGGAAGGCCACATCTCTGTTTACTTGGAAATGGTTGGAGCTGATTCACTTCAGACTGGATTCGAAGTATATGTTAATTTCAGGTTCTTTTTACTTGATCAGAATAAGGGAATGTTCCTGGTTCTTCAAGATGCCAATAAAAAGGAAAAGTGTTTCCATGGGGTAATGCGTTATTCGGGATTTGATAGGCTTATCACTCTTAAATCGTTTACTGATGCTTCCAACGGATATGTCATTGATGATTCCTGTGTGATTGGAGCTGAGGTCTTTGTTTGTAAAGAAAGAAGAGCTCGCAAAGGAGAGTCAATATCGATGGTCAAGGTTGCTGTTATGTGCAAGCATGTTTGGAAGGTTGAGAACTTTTCAAAGTTAGGTGCTGACCCCTACAAATCAGAACCATTCATTGCCAGAGAACGGAATTGGAAGATAGTGCTCTATCCTAAGGGACATAAGAAAGGAAAGGGTACTCATATTTCTCTTTTCTTGGAATTGGATGATCCGGAAAAACTTTCTGGTTCCAAAGTATTTGCAGAGTTTTCCATGCGCATTGTAGATCAAATGCATGCCAAACATGAGTGCTTAAAAGCAAACAACTGGTTCAGTACCTCAACTCGGGATTTCGGTTGGCCTACCTTCCTTAAACTGGACACCTTCAGTCAGGCAGGTAATGGGTTTTTGGTGAAGGATGCTTGCATAGTAGAGGCCGATGTCACTATCCGTGGAACTGCAACAGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

317

Amino Acids

35.75

Weight (kDa)

8.78

Isoelectric Point (pI)

21.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	26 - 159	1e-31	MATH domain
MATH	PF00917	43 - 161	4e-09	MATH domain
MATH_2	PF22486	183 - 307	1.3e-32	MATH domain
MATH	PF00917	188 - 309	3.8e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	755
Acc36I	ACCTGC	1 cut(s)	863
AccIII	TCCGGA	1 cut(s)	709
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	2 cut(s)	117, 146
AcuI	CTGAAG	2 cut(s)	245, 847
AfaI	GTAC	2 cut(s)	676, 814
AfiI	CCNNNNNNNGG	3 cut(s)	624, 822, 853
AgsI	TTSAA	3 cut(s)	152, 338, 576
AhlI	ACTAGT	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	5 cut(s)	68, 155, 251, 470, 500
AluI	AGCT	5 cut(s)	68, 155, 251, 470, 500
Alw21I	GWGCWC	3 cut(s)	183, 502, 645
AlwI	GGATC	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	822
Aor13HI	TCCGGA	1 cut(s)	709
AoxI	GGCC	3 cut(s)	217, 836, 912
ApoI	RAATTY	2 cut(s)	117, 146
AspLEI	GCGC	1 cut(s)	756
AsuHPI	GGTGA	1 cut(s)	901
AsuII	TTCGAA	1 cut(s)	273
AvaI	CYCGRG	1 cut(s)	822
AxyI	CCTNAGG	1 cut(s)	651
BanII	GRGCYC	1 cut(s)	502
Bbv12I	GWGCWC	3 cut(s)	183, 502, 645
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	517
BciT130I	CCWGG	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	307
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	947
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	727
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	4 cut(s)	28, 331, 415, 886
BpmI	CTGGAG	1 cut(s)	177
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu14I	TTCGAA	1 cut(s)	273
Bsa29I	ATCGAT	1 cut(s)	521
BsaJI	CCNNGG	2 cut(s)	367, 928
BsaWI	WCCGGW	1 cut(s)	709
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	3 cut(s)	624, 822, 853
Bse1I	ACTGG	3 cut(s)	271, 809, 858
Bse21I	CCTNAGG	1 cut(s)	651
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	367, 928
BseGI	GGATG	2 cut(s)	709, 901
BseLI	CCNNNNNNNGG	3 cut(s)	624, 822, 853
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	271, 809, 858
BshFI	GGCC	3 cut(s)	219, 838, 914
BshVI	ATCGAT	1 cut(s)	521
BsiHKAI	GWGCWC	3 cut(s)	183, 502, 645
BsiHKCI	CYCGRG	1 cut(s)	822
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	3 cut(s)	624, 822, 853
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	3 cut(s)	219, 838, 914
BsoBI	CYCGRG	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	3 cut(s)	183, 502, 645
Bsp13I	TCCGGA	1 cut(s)	709
Bsp143I	GATC	3 cut(s)	307, 706, 763
Bsp19I	CCATGG	1 cut(s)	367
BspANI	GGCC	3 cut(s)	219, 838, 914
BspCNI	CTCAG	1 cut(s)	463
BspDI	ATCGAT	1 cut(s)	521
BspEI	TCCGGA	1 cut(s)	709
BspLI	GGNNCC	1 cut(s)	727
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	1 cut(s)	701
BspQI	GCTCTTC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	3 cut(s)	271, 809, 858
BssECI	CCNNGG	2 cut(s)	367, 928
BssMI	GATC	3 cut(s)	307, 706, 763
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	948
Bst6I	CTCTTC	1 cut(s)	490
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	5 cut(s)	17, 502, 548, 774, 901
BstDEI	CTNAG	2 cut(s)	471, 651
BstDSI	CCRYGG	2 cut(s)	367, 928
BstF5I	GGATG	2 cut(s)	709, 901
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	3 cut(s)	310, 709, 766
BstMBI	GATC	3 cut(s)	307, 706, 763
BstNI	CCWGG	1 cut(s)	329
BstNSI	RCATGY	2 cut(s)	554, 776
BstSCI	CCNGG	1 cut(s)	327
BstSFI	CTRYAG	1 cut(s)	947
Bsu15I	ATCGAT	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	3 cut(s)	219, 838, 914
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	2 cut(s)	367, 928
BtsCI	GGATG	2 cut(s)	709, 901
BtsIMutI	CAGTG	2 cut(s)	129, 944
BveI	ACCTGC	1 cut(s)	863
Cac8I	GCNNGC	5 cut(s)	17, 502, 548, 774, 901
CfoI	GCGC	1 cut(s)	756
ClaI	ATCGAT	1 cut(s)	521
Csp6I	GTAC	2 cut(s)	675, 813
CviAII	CATG	6 cut(s)	105, 368, 551, 751, 773, 782
CviQI	GTAC	2 cut(s)	675, 813
DdeI	CTNAG	2 cut(s)	471, 651
DpnI	GATC	3 cut(s)	309, 708, 765
DpnII	GATC	3 cut(s)	307, 706, 763
Eam1104I	CTCTTC	1 cut(s)	490
EarI	CTCTTC	1 cut(s)	490
Ecl136II	GAGCTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	502
Eco32I	GATATC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	500
Eco57I	CTGAAG	2 cut(s)	245, 847
Eco81I	CCTNAGG	1 cut(s)	651
Eco88I	CYCGRG	1 cut(s)	822
EcoICRI	GAGCTC	1 cut(s)	500
EcoRII	CCWGG	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	51
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	774
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	6 cut(s)	108, 371, 554, 754, 776, 785
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	6 cut(s)	104, 367, 550, 750, 772, 781
FbaI	TGATCA	1 cut(s)	307
FokI	GGATG	2 cut(s)	716, 908
FriOI	GRGCYC	1 cut(s)	502
FspAI	RTGCGCAY	1 cut(s)	755
FspBI	CTAG	1 cut(s)	176
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	1 cut(s)	755
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	219, 838, 914
HapII	CCGG	1 cut(s)	710
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	6 cut(s)	108, 371, 554, 754, 776, 785
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	6 cut(s)	62, 137, 254, 270, 452, 512
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	901
Hpy166II	GTNNAC	3 cut(s)	127, 232, 420
Hpy188I	TCNGA	5 cut(s)	61, 87, 264, 312, 604
Hpy188III	TCNNGA	5 cut(s)	141, 338, 387, 710, 824
Hpy8I	GTNNAC	3 cut(s)	127, 232, 420
HpyAV	CCTTC	5 cut(s)	209, 553, 853, 871, 886
HpyCH4III	ACNGT	1 cut(s)	948
HpyCH4V	TGCA	6 cut(s)	19, 546, 740, 772, 903, 938
HpyF3I	CTNAG	2 cut(s)	471, 651
Hsp92II	CATG	6 cut(s)	108, 371, 554, 754, 776, 785
HspAI	GCGC	1 cut(s)	754
Kpn2I	TCCGGA	1 cut(s)	709
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	307, 706, 763
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	3 cut(s)	73, 248, 467
LweI	GCATC	4 cut(s)	28, 331, 415, 886
MaeI	CTAG	1 cut(s)	176
MaeIII	GTNAC	1 cut(s)	919
MalI	GATC	3 cut(s)	309, 708, 765
MboI	GATC	3 cut(s)	307, 706, 763
MboII	GAAGA	4 cut(s)	214, 326, 507, 646
MhlI	GDGCHC	3 cut(s)	183, 502, 645
MluCI	AATT	5 cut(s)	117, 146, 286, 628, 698
MlyI	GAGTC	2 cut(s)	146, 521
MmeI	TCCRAC	3 cut(s)	95, 226, 456
MnlI	CCTC	4 cut(s)	152, 466, 826, 904
Mph1103I	ATGCAT	1 cut(s)	774
MroI	TCCGGA	1 cut(s)	709
MseI	TTAA	4 cut(s)	285, 411, 791, 849
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
NcoI	CCATGG	1 cut(s)	367
NdeII	GATC	3 cut(s)	307, 706, 763
NlaIII	CATG	6 cut(s)	108, 371, 554, 754, 776, 785
NlaIV	GGNNCC	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	919
NsbI	TGCGCA	1 cut(s)	755
NsiI	ATGCAT	1 cut(s)	774
NspI	RCATGY	2 cut(s)	554, 776
NspV	TTCGAA	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	490
PfeI	GAWTC	4 cut(s)	62, 254, 270, 452
PleI	GAGTC	2 cut(s)	145, 520
PpsI	GAGTC	2 cut(s)	145, 520
Psp124BI	GAGCTC	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	727
RsaI	GTAC	2 cut(s)	676, 814
RsaNI	GTAC	2 cut(s)	675, 813
RseI	CAYNNNNRTG	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	502
SapI	GCTCTTC	1 cut(s)	490
SaqAI	TTAA	4 cut(s)	285, 411, 791, 849
Sau3AI	GATC	3 cut(s)	307, 706, 763
SchI	GAGTC	2 cut(s)	146, 521
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	183, 502, 645
SfaNI	GCATC	4 cut(s)	28, 331, 415, 886
SfcI	CTRYAG	1 cut(s)	947
SfuI	TTCGAA	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	103
SpeI	ACTAGT	1 cut(s)	175
SphI	GCATGC	1 cut(s)	776
Sse9I	AATT	5 cut(s)	117, 146, 286, 628, 698
SspMI	CTAG	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	502
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	948
TaqI	TCGA	3 cut(s)	47, 273, 521
TasI	AATT	5 cut(s)	117, 146, 286, 628, 698
TfiI	GAWTC	4 cut(s)	62, 254, 270, 452
Tru1I	TTAA	4 cut(s)	285, 411, 791, 849
Tru9I	TTAA	4 cut(s)	285, 411, 791, 849
TscAI	CASTG	2 cut(s)	129, 951
TseFI	GTSAC	1 cut(s)	919
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	2 cut(s)	93, 601
TspGWI	ACGGA	3 cut(s)	450, 640, 917
TspRI	CASTG	2 cut(s)	129, 951
XapI	RAATTY	2 cut(s)	117, 146
XceI	RCATGY	2 cut(s)	554, 776
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.