Rmu_sc0000953.1_g000004

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000953.1
Physical Location & Seq
Reverse (-)
10466 .. 14117
3652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000953.1_g000004.1.cds

Sequence Viewer

Length: 1086 bp
atggcaaaccttaacttggaaaaagatggtgttttgagatcattttcagattcaccgccaactcattactccgtagaaatacagttgttttcgttgcttattgaaacgtactcagagaatggatatgaatcgaaggagtttgaagctggagggtacaaatggaaactggtgtttcacccaaatggaaacaaaaagaagaatgtaaaagaccacatctccctctacttggtaatagttggaacagattcactagatagtagttgggaagtatatgttgatttcagactgtttctgctcgatcagaataagggaaactacttggtttttgaagatgctttaacaaagaagaaatgctttcatgggccaatgcgtagtgcaggtttcgataaacttatccctcttgaagattttactgatgtttccaatggatttctagtcgacgatacatgtgtgtttggagccgaggtctttgtttgtaaagaaagaagaacaggcaaaggcgagtgcctagcaaggatgaaggaagcctctgtatgcaaacatgtttggaaggttgagaaattttcatctttggatgctgcatatgagtctgaaccgttcactgctgggggctataattggttatctgtagctgttcttagtctttccctatgtgtttgttggatgttttgcaggaagataaagctttatcctaagggatgtggcgaaggtaagggcagtcatctttctctatttttgtacttggctagtcccatagccctcccccctggctctgaactatttgtggagtatagatttcgcattctggatcaaattcatcaccagcatcatcatccttctagtgctaagaactggttccgtcacttccgtgacggtacaggttggggttgccgtaaattcattgaacaagaaactttcgggcaggtagacaaggggtttttgaagaatgatgcttgcatagtggaagcagaggtgactgtccatggaatttctaaagcactatcgcaaaccagtcctcaatcccaatgttttaaaacgctgaggcgtaccccgaagcgtttttgggagagccttgataaggcgtaa

Protein Analysis

361

Amino Acids

41.14

Weight (kDa)

7.92

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 368, 913
AccI GTMKAC 2 cut(s) 438, 927
AciI CCGC 1 cut(s) 56
AclWI GGATC 1 cut(s) 816
AcsI RAATTY 4 cut(s) 560, 813, 896, 987
AfaI GTAC 5 cut(s) 110, 155, 740, 877, 1048
AfiI CCNNNNNNNGG 3 cut(s) 16, 226, 1078
AflIII ACRYGT 2 cut(s) 446, 541
AgsI TTSAA 6 cut(s) 104, 143, 329, 404, 905, 943
AjnI CCWGG 1 cut(s) 766
AleI CACNNNNGTG 1 cut(s) 867
AluBI AGCT 3 cut(s) 146, 632, 685
AluI AGCT 3 cut(s) 146, 632, 685
AlwI GGATC 1 cut(s) 816
AoxI GGCC 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 4 cut(s) 560, 813, 896, 987
Asp700I GAANNNNTTC 2 cut(s) 244, 854
AspS9I GGNCC 1 cut(s) 362
AsuHPI GGTGA 4 cut(s) 45, 167, 812, 985
AxyI CCTNAGG 1 cut(s) 693
BaeI ACNNNNGTAYC 2 cut(s) 435, 468
BbvCI CCTCAGC 1 cut(s) 1040
BbvI GCAGC 1 cut(s) 565
BccI CCATC 1 cut(s) 20
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 1 cut(s) 768
BfaI CTAG 5 cut(s) 251, 434, 509, 747, 840
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 2 cut(s) 368, 913
BisI GCNGC 1 cut(s) 579
BlsI GCNGC 1 cut(s) 580
Bme1390I CCNGG 1 cut(s) 768
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 2 cut(s) 460, 857
BmrFI CCNGG 1 cut(s) 768
BmsI GCATC 4 cut(s) 322, 565, 835, 940
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 462, 766, 982
BsaXI ACNNNNNCTCC 4 cut(s) 200, 230, 450, 480
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 226, 1078
Bse1I ACTGG 3 cut(s) 171, 857, 1011
Bse21I CCTNAGG 1 cut(s) 693
Bse8I GATNNNNATC 1 cut(s) 127
BseBI CCWGG 1 cut(s) 768
BseDI CCNNGG 3 cut(s) 462, 766, 982
BseGI GGATG 5 cut(s) 522, 580, 669, 704, 832
BseJI GATNNNNATC 1 cut(s) 127
BseLI CCNNNNNNNGG 3 cut(s) 16, 226, 1078
BseMII CTCAG 2 cut(s) 126, 1031
BseNI ACTGG 3 cut(s) 171, 857, 1011
BseXI GCAGC 1 cut(s) 565
BseYI CCCAGC 1 cut(s) 605
BsgI GTGCAG 1 cut(s) 396
BshFI GGCC 1 cut(s) 364
BslFI GGGAC 1 cut(s) 735
BslI CCNNNNNNNGG 3 cut(s) 16, 226, 1078
BsmFI GGGAC 1 cut(s) 735
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 1 cut(s) 364
Bsp143I GATC 3 cut(s) 38, 298, 808
Bsp19I CCATGG 1 cut(s) 982
BspACI CCGC 1 cut(s) 56
BspANI GGCC 1 cut(s) 364
BspCNI CTCAG 2 cut(s) 125, 1032
BspLI GGNNCC 2 cut(s) 460, 857
BspMI ACCTGC 2 cut(s) 368, 913
BspPI GGATC 1 cut(s) 816
BsrI ACTGG 3 cut(s) 171, 857, 1011
BssECI CCNNGG 3 cut(s) 462, 766, 982
BssMI GATC 3 cut(s) 38, 298, 808
BssT1I CCWWGG 1 cut(s) 982
Bst2UI CCWGG 1 cut(s) 768
Bst4CI ACNGT 5 cut(s) 84, 288, 597, 875, 979
BstC8I GCNNGC 1 cut(s) 955
BstDEI CTNAG 5 cut(s) 112, 638, 693, 846, 1040
BstDSI CCRYGG 1 cut(s) 982
BstENI CCTNNNNNAGG 1 cut(s) 1076
BstF5I GGATG 5 cut(s) 522, 580, 669, 704, 832
BstKTI GATC 3 cut(s) 41, 301, 811
BstMBI GATC 3 cut(s) 38, 298, 808
BstNI CCWGG 1 cut(s) 768
BstNSI RCATGY 2 cut(s) 450, 545
BstSCI CCNGG 1 cut(s) 766
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 693
BsuRI GGCC 1 cut(s) 364
BtgI CCRYGG 1 cut(s) 982
BtsCI GGATG 5 cut(s) 522, 580, 669, 704, 832
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 1 cut(s) 600
BveI ACCTGC 2 cut(s) 368, 913
Cac8I GCNNGC 1 cut(s) 955
Cfr13I GGNCC 1 cut(s) 362
Csp6I GTAC 5 cut(s) 109, 154, 739, 876, 1047
CviAII CATG 4 cut(s) 359, 447, 542, 983
CviQI GTAC 5 cut(s) 109, 154, 739, 876, 1047
DdeI CTNAG 5 cut(s) 112, 638, 693, 846, 1040
DpnI GATC 3 cut(s) 40, 300, 810
DpnII GATC 3 cut(s) 38, 298, 808
DraI TTTAAA 1 cut(s) 1033
Eco130I CCWWGG 1 cut(s) 982
Eco81I CCTNAGG 1 cut(s) 693
EcoNI CCTNNNNNAGG 1 cut(s) 1076
EcoRII CCWGG 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 982
ErhI CCWWGG 1 cut(s) 982
FaeI CATG 4 cut(s) 362, 450, 545, 986
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 1 cut(s) 735
FatI CATG 4 cut(s) 358, 446, 541, 982
FauNDI CATATG 1 cut(s) 583
FblI GTMKAC 2 cut(s) 438, 927
Fnu4HI GCNGC 1 cut(s) 579
FokI GGATG 5 cut(s) 529, 587, 676, 711, 819
Fsp4HI GCNGC 1 cut(s) 579
FspBI CTAG 5 cut(s) 251, 434, 509, 747, 840
GluI GCNGC 1 cut(s) 579
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 364
Hin1II CATG 4 cut(s) 362, 450, 545, 986
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 4 cut(s) 50, 128, 245, 587
HphI GGTGA 4 cut(s) 45, 167, 812, 985
Hpy166II GTNNAC 3 cut(s) 439, 600, 928
Hpy188I TCNGA 6 cut(s) 49, 115, 284, 303, 592, 775
Hpy188III TCNNGA 2 cut(s) 401, 806
Hpy8I GTNNAC 3 cut(s) 439, 600, 928
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 5 cut(s) 127, 514, 544, 701, 846
HpyCH4III ACNGT 5 cut(s) 84, 288, 597, 875, 979
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 5 cut(s) 377, 537, 581, 672, 957
HpyF3I CTNAG 5 cut(s) 112, 638, 693, 846, 1040
HpySE526I ACGT 1 cut(s) 107
Hsp92II CATG 4 cut(s) 362, 450, 545, 986
Kzo9I GATC 3 cut(s) 38, 298, 808
LmnI GCTCC 1 cut(s) 458
Lsp1109I GCAGC 1 cut(s) 565
LweI GCATC 4 cut(s) 322, 565, 835, 940
MaeI CTAG 5 cut(s) 251, 434, 509, 747, 840
MaeII ACGT 1 cut(s) 107
MaeIII GTNAC 3 cut(s) 860, 869, 973
MalI GATC 3 cut(s) 40, 300, 810
MboI GATC 3 cut(s) 38, 298, 808
MboII GAAGA 7 cut(s) 208, 341, 358, 416, 498, 688, 955
MluCI AATT 5 cut(s) 560, 616, 813, 896, 987
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 217, 641
MnlI CCTC 9 cut(s) 143, 230, 408, 457, 538, 770, 964, 1026, 1035
MroXI GAANNNNTTC 2 cut(s) 244, 854
MseI TTAA 3 cut(s) 12, 338, 1032
MslI CAYNNNNRTG 2 cut(s) 180, 867
MspR9I CCNGG 1 cut(s) 768
Mva1269I GAATGC 1 cut(s) 801
MvaI CCWGG 1 cut(s) 768
NcoI CCATGG 1 cut(s) 982
NdeI CATATG 1 cut(s) 583
NdeII GATC 3 cut(s) 38, 298, 808
NlaIII CATG 4 cut(s) 362, 450, 545, 986
NlaIV GGNNCC 2 cut(s) 460, 857
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 3 cut(s) 860, 869, 973
NspI RCATGY 2 cut(s) 450, 545
OliI CACNNNNGTG 1 cut(s) 867
PciI ACATGT 2 cut(s) 446, 541
PctI GAATGC 1 cut(s) 801
PdmI GAANNNNTTC 2 cut(s) 244, 854
PfeI GAWTC 3 cut(s) 50, 128, 245
PkrI GCNGC 1 cut(s) 580
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PscI ACATGT 2 cut(s) 446, 541
Psp6I CCWGG 1 cut(s) 766
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 766
PspN4I GGNNCC 2 cut(s) 460, 857
PspPI GGNCC 1 cut(s) 362
RsaI GTAC 5 cut(s) 110, 155, 740, 877, 1048
RsaNI GTAC 5 cut(s) 109, 154, 739, 876, 1047
RseI CAYNNNNRTG 2 cut(s) 180, 867
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 3 cut(s) 12, 338, 1032
SatI GCNGC 1 cut(s) 579
Sau3AI GATC 3 cut(s) 38, 298, 808
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 1 cut(s) 768
SfaNI GCATC 4 cut(s) 322, 565, 835, 940
SfcI CTRYAG 1 cut(s) 627
SmiMI CAYNNNNRTG 2 cut(s) 180, 867
Sse9I AATT 5 cut(s) 560, 616, 813, 896, 987
SsiI CCGC 1 cut(s) 56
SspMI CTAG 5 cut(s) 251, 434, 509, 747, 840
StyD4I CCNGG 1 cut(s) 766
StyI CCWWGG 1 cut(s) 982
TaaI ACNGT 5 cut(s) 84, 288, 597, 875, 979
TaiI ACGT 1 cut(s) 110
TaqI TCGA 4 cut(s) 131, 297, 384, 438
TasI AATT 5 cut(s) 560, 616, 813, 896, 987
TatI WGTACW 1 cut(s) 738
TfiI GAWTC 3 cut(s) 50, 128, 245
Tru1I TTAA 3 cut(s) 12, 338, 1032
Tru9I TTAA 3 cut(s) 12, 338, 1032
TscAI CASTG 1 cut(s) 607
TseFI GTSAC 3 cut(s) 860, 869, 973
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 3 cut(s) 860, 869, 973
TspDTI ATGAA 6 cut(s) 141, 347, 533, 555, 806, 889
TspGWI ACGGA 3 cut(s) 61, 848, 857
TspRI CASTG 1 cut(s) 607
XagI CCTNNNNNAGG 1 cut(s) 1076
XapI RAATTY 4 cut(s) 560, 813, 896, 987
XceI RCATGY 2 cut(s) 450, 545
XmiI GTMKAC 2 cut(s) 438, 927
XmnI GAANNNNTTC 2 cut(s) 244, 854
XspI CTAG 5 cut(s) 251, 434, 509, 747, 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.