Rroxscaffold_5G00368770

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
50514639 .. 50519187
4549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368770.1

Sequence Viewer

Length: 1110 bp
ATGGCCAACCTTAACGTGGACAAAGATGTTTCAGGGGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTATTCTGTAGAAATACAGTTTTTTTCGTTGCTTAGTGAAAAATATTCAGAGAATGGATATGAATCAAAGGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTGTTTCACCCAAATGGAAACAAAAAGAGGAATGTAAAAGACCACATCTCCCTCTACTTGGTGATAGCTGGAGCAGATTCACTGGATAGTAGTTGGGAAGTACATGTTGATTTCAGATTGTTTCTGCTCGATCAGAATAAGGGAAACTACTTGGTTTTTGAAGATGCTTTCACAAAGAAGAAATGCTTTCATGGGTTGATGCGTAGTGTGGGTTTCGATAGACTTATCCCTTTTGAAGATTTTACTGATGTTTCCAATGGCTTTCTAGTGGATGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAACAGGCAAAGGCGAGTGCCTAGCAAGGATGAAGATAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTAGGTGCTCAATTTTATGACTCTGAACCGTTCACTGCTGGGGACTACTATTGGAAGATAAAGCTGTATCCTGATGGATGTGGGGAAGGCAAGGGTAGTCATCTTTCTCTGTTTTTGGAATTGGCTAGTCCCATAACCCTCCCCCTGGCTCAGAACTATTTGTGGAGTAAGGCCTGGTTCCGTGACGGTACAAGTTTGGGTTCGCGTAGATTCATTGGACAAGAATCTTTCAGGCAGGTAGAAAATGGGTTTTTGAAGAATGATGTTTGCATGGTAGAAGCAGAGGTGACCGTCCATGGAATTTCTAAATTACTATATAACATTGCGGCTAATGACTTTGTTATTCGAGAAGGTGGCGAACTCGACCCCAATGGTGGACTTGGACTCGAGGTTGAACTCGTTCTTGGTGAACATGGAGAGCAGATTGGACTTGCCGACGCCAGAGTCGCCAATCAAGAGAATGGTTCCCTTCTTTCAGCTGGTTTAGGAATGTTAGTCAGTCATCTATCCTGGTTGCTGAAGCTAGGGCGTTGA

Protein Analysis

369

Amino Acids

41.3

Weight (kDa)

5.64

Isoelectric Point (pI)

28.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 24 - 158 7.9e-33 MATH domain
MATH PF00917 40 - 160 3.7e-11 MATH domain
MATH_2 PF22486 182 - 238 5.9e-15 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1019
Acc36I ACCTGC 1 cut(s) 802
AccII CGCG 1 cut(s) 781
AciI CCGC 2 cut(s) 62, 902
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 566, 876
AcyI GRCGYC 1 cut(s) 1014
AfaI GTAC 2 cut(s) 276, 766
AfiI CCNNNNNNNGG 4 cut(s) 16, 232, 721, 950
AflIII ACRYGT 3 cut(s) 277, 452, 547
AgsI TTSAA 5 cut(s) 149, 335, 410, 832, 971
AjnI CCWGG 3 cut(s) 720, 749, 1085
AjuI GAANNNNNNNTTGG 4 cut(s) 58, 90, 963, 995
AleI CACNNNNGTG 1 cut(s) 455
AluBI AGCT 5 cut(s) 152, 242, 640, 1055, 1099
AluI AGCT 5 cut(s) 152, 242, 640, 1055, 1099
Alw21I GWGCWC 1 cut(s) 586
Ama87I CYCGRG 1 cut(s) 962
AoxI GGCC 2 cut(s) 3, 747
ApoI RAATTY 2 cut(s) 566, 876
Asp700I GAANNNNTTC 1 cut(s) 975
AsuHPI GGTGA 5 cut(s) 51, 173, 247, 874, 995
AvaI CYCGRG 1 cut(s) 962
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 586
BccI CCATC 1 cut(s) 644
BciT130I CCWGG 3 cut(s) 722, 751, 1087
BciVI GTATCC 2 cut(s) 152, 654
BfaI CTAG 4 cut(s) 440, 515, 702, 1100
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 802
BfuI GTATCC 2 cut(s) 152, 654
BisI GCNGC 1 cut(s) 903
BlsI GCNGC 1 cut(s) 904
Bme1390I CCNGG 3 cut(s) 722, 751, 1087
BmeT110I CYCGRG 1 cut(s) 962
BmiI GGNNCC 3 cut(s) 466, 755, 1042
BmrFI CCNGG 3 cut(s) 722, 751, 1087
BmsI GCATC 2 cut(s) 328, 363
BpmI CTGGAG 2 cut(s) 174, 264
BsaBI GATNNNNATC 1 cut(s) 133
BsaHI GRCGYC 1 cut(s) 1014
BsaJI CCNNGG 3 cut(s) 468, 720, 871
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 456, 486
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 232, 721, 950
Bse1I ACTGG 2 cut(s) 177, 261
Bse3DI GCAATG 1 cut(s) 897
Bse8I GATNNNNATC 1 cut(s) 133
BseBI CCWGG 3 cut(s) 722, 751, 1087
BseDI CCNNGG 3 cut(s) 468, 720, 871
BseGI GGATG 3 cut(s) 451, 528, 659
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 4 cut(s) 16, 232, 721, 950
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 1 cut(s) 740
BseNI ACTGG 2 cut(s) 177, 261
BseYI CCCAGC 1 cut(s) 614
Bsh1236I CGCG 1 cut(s) 781
BshFI GGCC 2 cut(s) 5, 749
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 962
BslFI GGGAC 2 cut(s) 632, 690
BslI CCNNNNNNNGG 4 cut(s) 16, 232, 721, 950
BsmFI GGGAC 2 cut(s) 632, 690
BsnI GGCC 2 cut(s) 5, 749
BsoBI CYCGRG 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 2 cut(s) 44, 304
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 2 cut(s) 62, 902
BspANI GGCC 2 cut(s) 5, 749
BspCNI CTCAG 1 cut(s) 739
BspFNI CGCG 1 cut(s) 781
BspLI GGNNCC 3 cut(s) 466, 755, 1042
BspMI ACCTGC 1 cut(s) 802
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 2 cut(s) 177, 261
BssECI CCNNGG 3 cut(s) 468, 720, 871
BssMI GATC 2 cut(s) 44, 304
BssNI GRCGYC 1 cut(s) 1014
BssT1I CCWWGG 1 cut(s) 871
Bst2UI CCWGG 3 cut(s) 722, 751, 1087
Bst4CI ACNGT 4 cut(s) 90, 606, 764, 868
BstACI GRCGYC 1 cut(s) 1014
BstDEI CTNAG 2 cut(s) 104, 726
BstDSI CCRYGG 1 cut(s) 871
BstEII GGTNACC 1 cut(s) 862
BstF5I GGATG 3 cut(s) 451, 528, 659
BstFNI CGCG 1 cut(s) 781
BstKTI GATC 2 cut(s) 47, 307
BstMBI GATC 2 cut(s) 44, 304
BstMWI GCNNNNNNNGC 1 cut(s) 1022
BstNI CCWGG 3 cut(s) 722, 751, 1087
BstNSI RCATGY 3 cut(s) 281, 456, 551
BstPI GGTNACC 1 cut(s) 862
BstSCI CCNGG 3 cut(s) 720, 749, 1085
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 1 cut(s) 781
BsuI GTATCC 2 cut(s) 152, 654
BsuRI GGCC 2 cut(s) 5, 749
BtgI CCRYGG 1 cut(s) 871
BtsCI GGATG 3 cut(s) 451, 528, 659
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 254, 609
BveI ACCTGC 1 cut(s) 802
CseI GACGC 1 cut(s) 1022
Csp6I GTAC 2 cut(s) 275, 765
CviAII CATG 7 cut(s) 278, 365, 453, 548, 847, 872, 989
CviQI GTAC 2 cut(s) 275, 765
DdeI CTNAG 2 cut(s) 104, 726
DpnI GATC 2 cut(s) 46, 306
DpnII GATC 2 cut(s) 44, 304
DrdI GACNNNNNNGTC 1 cut(s) 1019
DseDI GACNNNNNNGTC 1 cut(s) 1019
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 871
Eco147I AGGCCT 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 962
Eco91I GGTNACC 1 cut(s) 862
EcoO65I GGTNACC 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 720, 749, 1085
EcoT14I CCWWGG 1 cut(s) 871
ErhI CCWWGG 1 cut(s) 871
FaeI CATG 7 cut(s) 281, 368, 456, 551, 850, 875, 992
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 2 cut(s) 632, 690
FatI CATG 7 cut(s) 277, 364, 452, 547, 846, 871, 988
Fnu4HI GCNGC 1 cut(s) 903
FokI GGATG 3 cut(s) 458, 535, 666
Fsp4HI GCNGC 1 cut(s) 903
FspBI CTAG 4 cut(s) 440, 515, 702, 1100
GluI GCNGC 1 cut(s) 903
GsaI CCCAGC 1 cut(s) 618
GsuI CTGGAG 2 cut(s) 174, 264
HaeIII GGCC 2 cut(s) 5, 749
HgaI GACGC 1 cut(s) 1022
Hin1I GRCGYC 1 cut(s) 1014
Hin1II CATG 7 cut(s) 281, 368, 456, 551, 850, 875, 992
HinfI GANTC 8 cut(s) 56, 134, 251, 596, 786, 800, 960, 1020
HphI GGTGA 5 cut(s) 51, 173, 247, 874, 995
Hpy166II GTNNAC 4 cut(s) 19, 609, 953, 986
Hpy188I TCNGA 6 cut(s) 55, 121, 290, 309, 601, 729
Hpy188III TCNNGA 3 cut(s) 647, 923, 1031
Hpy8I GTNNAC 4 cut(s) 19, 609, 953, 986
Hpy99I CGWCG 1 cut(s) 1016
HpyAV CCTTC 4 cut(s) 550, 656, 920, 1055
HpyCH4III ACNGT 4 cut(s) 90, 606, 764, 868
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 543, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 1022
HpyF3I CTNAG 2 cut(s) 104, 726
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 1014
Hsp92II CATG 7 cut(s) 281, 368, 456, 551, 850, 875, 992
Kzo9I GATC 2 cut(s) 44, 304
LmnI GCTCC 2 cut(s) 245, 464
LweI GCATC 2 cut(s) 328, 363
MaeI CTAG 4 cut(s) 440, 515, 702, 1100
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 2 cut(s) 758, 862
MalI GATC 2 cut(s) 46, 306
MboI GATC 2 cut(s) 44, 304
MboII GAAGA 7 cut(s) 347, 364, 422, 504, 538, 643, 844
MhlI GDGCHC 1 cut(s) 586
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 566, 587, 695, 876, 884
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 590, 954, 1029
MnlI CCTC 8 cut(s) 149, 195, 236, 463, 544, 725, 853, 958
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 975
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 12
MslI CAYNNNNRTG 2 cut(s) 186, 455
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1055
MspR9I CCNGG 3 cut(s) 722, 751, 1087
MvaI CCWGG 3 cut(s) 722, 751, 1087
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 1 cut(s) 1022
NcoI CCATGG 1 cut(s) 871
NdeII GATC 2 cut(s) 44, 304
NlaIII CATG 7 cut(s) 281, 368, 456, 551, 850, 875, 992
NlaIV GGNNCC 3 cut(s) 466, 755, 1042
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 758, 862
NspI RCATGY 3 cut(s) 281, 456, 551
OliI CACNNNNGTG 1 cut(s) 455
PaeR7I CTCGAG 1 cut(s) 962
PceI AGGCCT 1 cut(s) 749
PciI ACATGT 3 cut(s) 277, 452, 547
PdmI GAANNNNTTC 1 cut(s) 975
PfeI GAWTC 5 cut(s) 56, 134, 251, 786, 800
PkrI GCNGC 1 cut(s) 904
PleI GAGTC 3 cut(s) 590, 954, 1028
PpsI GAGTC 3 cut(s) 590, 954, 1028
PscI ACATGT 3 cut(s) 277, 452, 547
Psp6I CCWGG 3 cut(s) 720, 749, 1085
PspEI GGTNACC 1 cut(s) 862
PspFI CCCAGC 1 cut(s) 614
PspGI CCWGG 3 cut(s) 720, 749, 1085
PspN4I GGNNCC 3 cut(s) 466, 755, 1042
PspXI VCTCGAGB 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 1055
RsaI GTAC 2 cut(s) 276, 766
RsaNI GTAC 2 cut(s) 275, 765
RseI CAYNNNNRTG 2 cut(s) 186, 455
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 903
Sau3AI GATC 2 cut(s) 44, 304
SchI GAGTC 3 cut(s) 590, 954, 1029
ScrFI CCNGG 3 cut(s) 722, 751, 1087
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 328, 363
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 962
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 2 cut(s) 186, 455
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
Sse9I AATT 5 cut(s) 566, 587, 695, 876, 884
SseBI AGGCCT 1 cut(s) 749
SsiI CCGC 2 cut(s) 62, 902
SspI AATATT 1 cut(s) 116
SspMI CTAG 4 cut(s) 440, 515, 702, 1100
StuI AGGCCT 1 cut(s) 749
StyD4I CCNGG 3 cut(s) 720, 749, 1085
StyI CCWWGG 1 cut(s) 871
TaaI ACNGT 4 cut(s) 90, 606, 764, 868
TaiI ACGT 1 cut(s) 18
TaqI TCGA 5 cut(s) 303, 390, 922, 939, 963
TasI AATT 5 cut(s) 566, 587, 695, 876, 884
TatI WGTACW 1 cut(s) 274
TauI GCSGC 1 cut(s) 905
TfiI GAWTC 5 cut(s) 56, 134, 251, 786, 800
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 2 cut(s) 261, 616
TseFI GTSAC 2 cut(s) 758, 862
Tsp45I GTSAC 2 cut(s) 758, 862
TspDTI ATGAA 5 cut(s) 147, 353, 539, 561, 778
TspGWI ACGGA 1 cut(s) 746
TspRI CASTG 2 cut(s) 261, 616
XapI RAATTY 2 cut(s) 566, 876
XceI RCATGY 3 cut(s) 281, 456, 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 962
XmnI GAANNNNTTC 1 cut(s) 975
XspI CTAG 4 cut(s) 440, 515, 702, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.