Rh4CG291800

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
55000438 .. 55002997
2560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG291800.1

Sequence Viewer

Length: 945 bp
ATGAATTTGCAACCTGTATCAGTTGTTCTACAAAGCTGGAAGCCTCCAATGACGTACGGCTCGCCGTTTATGCCTAGGTCATCGTCCCAATGGCAACCCTTAAATAAGCACACGCTCACCATGACGTTGCCGGCGGCCTCCGAACTCTCTCCACGCAAATGGAGCCTTCAGTACTCGCATCTGTCACCAGTTCCTGCTCGGCACATAGCTCCTGTTAGCGCAGCCAGGTTGCCATTGCAATGGAGCTGCTTGGAATCACTTGTCCCAGTACTCAGCGCAGCAGCTTGGGCTGTCCAACTGATATCGAGCTTGCTCATGTTCTTCAGGGAGTCTCAAAGCCCTAGATTATTAGACCAAAGACAAAGTAGCGGCTTAGTTCCGCAAGAGGTAGGGAAATCAGGGATGTGCAAACCATTTCTAGATGCTACTCCAACTCATTACACTGTAAAAATAGAGTTATTTTCAAGGCTAAAGAATTTTTGTAAAGAGGATCCATATGAATCAAGAGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTACTCTACCCAGATGGAAACAAAAGAAGAAATGTGGAAGGTCACATCTCTCTCTACTTGGAAATAGCTGGAACAAATTTATTTCAGCCTGGTTGGGAGGTAAATGTTGATTTTAGATTGTTCTTGCTTGATCAGCATAAAAGAGTCTACTTGGTTTTTGAAGATGCTTCTACACAGAAAATGTGCTTCAATGGGGATATGCCTTGTGCGGCCGGTTTTGATAAGCTTATCCGTGTTAAAGATTTTACTGATGACTCCAACGGATATCTAGTTGATGACACGTGCGTGTTTGGTGCTGATGTCTTTGTCTGTAAAGAAAGGAGAACAGGCAAAGGGGAGTGTCTATCAAGGATCCAGAATCCTTCAACGTACAAGAGTATGTTTGGAAAATTGATAATTTTTTAA

Protein Analysis

314

Amino Acids

35.65

Weight (kDa)

8.82

Isoelectric Point (pI)

59.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 146 - 281 3.6e-33 MATH domain
MATH PF00917 154 - 282 7.1e-12 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 687
AciI CCGC 4 cut(s) 134, 369, 380, 749
AclWI GGATC 4 cut(s) 485, 498, 886, 899
AcoI YGGCCR 1 cut(s) 750
AcsI RAATTY 3 cut(s) 4, 475, 616
AcuI CTGAAG 2 cut(s) 152, 307
AcvI CACGTG 1 cut(s) 822
AfaI GTAC 5 cut(s) 56, 173, 270, 543, 911
AflIII ACRYGT 1 cut(s) 819
AgsI TTSAA 5 cut(s) 465, 515, 701, 730, 906
AjnI CCWGG 2 cut(s) 224, 628
AleI CACNNNNGTG 1 cut(s) 824
AluBI AGCT 8 cut(s) 36, 209, 246, 284, 309, 518, 608, 766
AluI AGCT 8 cut(s) 36, 209, 246, 284, 309, 518, 608, 766
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 4 cut(s) 485, 498, 886, 899
AlwNI CAGNNNCTG 1 cut(s) 194
AoxI GGCC 2 cut(s) 135, 750
ApeKI GCWGC 4 cut(s) 221, 246, 278, 281
ApoI RAATTY 3 cut(s) 4, 475, 616
AspA2I CCTAGG 1 cut(s) 74
AspLEI GCGC 2 cut(s) 221, 278
AsuHPI GGTGA 2 cut(s) 109, 177
AvrII CCTAGG 1 cut(s) 74
BamHI GGATCC 2 cut(s) 490, 891
BbrPI CACGTG 1 cut(s) 822
BbvI GCAGC 4 cut(s) 233, 233, 290, 293
BccI CCATC 1 cut(s) 548
BceAI ACGGC 2 cut(s) 49, 73
BciT130I CCWGG 2 cut(s) 226, 630
BciVI GTATCC 1 cut(s) 518
BclI TGATCA 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 4 cut(s) 75, 342, 419, 809
BfuI GTATCC 1 cut(s) 518
BisI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 750
BlnI CCTAGG 1 cut(s) 74
BlsI GCNGC 7 cut(s) 136, 223, 248, 280, 283, 371, 751
BmcAI AGTACT 2 cut(s) 173, 270
Bme1390I CCNGG 2 cut(s) 226, 630
BmiI GGNNCC 3 cut(s) 164, 492, 893
BmrFI CCNGG 2 cut(s) 226, 630
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 187, 412, 694
BmuI ACTGGG 1 cut(s) 260
BpmI CTGGAG 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 822
BsaJI CCNNGG 1 cut(s) 74
Bse118I RCCGGY 2 cut(s) 130, 752
Bse1I ACTGG 3 cut(s) 188, 266, 543
Bse3DI GCAATG 2 cut(s) 233, 245
BseBI CCWGG 2 cut(s) 226, 630
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 408
BseMI GCAATG 2 cut(s) 233, 245
BseMII CTCAG 1 cut(s) 286
BseNI ACTGG 3 cut(s) 188, 266, 543
BseX3I CGGCCG 1 cut(s) 750
BseXI GCAGC 4 cut(s) 233, 233, 290, 293
Bsh1285I CGRYCG 1 cut(s) 753
BshFI GGCC 2 cut(s) 137, 752
BsiEI CGRYCG 1 cut(s) 753
BsiSI CCGG 2 cut(s) 131, 753
BsiWI CGTACG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 70, 248
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 70, 248
BsnI GGCC 2 cut(s) 137, 752
Bsp143I GATC 3 cut(s) 490, 670, 891
BspACI CCGC 4 cut(s) 134, 369, 380, 749
BspANI GGCC 2 cut(s) 137, 752
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 3 cut(s) 164, 492, 893
BspPI GGATC 4 cut(s) 485, 498, 886, 899
BsrDI GCAATG 2 cut(s) 233, 245
BsrFI RCCGGY 2 cut(s) 130, 752
BsrI ACTGG 3 cut(s) 188, 266, 543
BssAI RCCGGY 2 cut(s) 130, 752
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 3 cut(s) 490, 670, 891
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 226, 630
Bst4CI ACNGT 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 822
BstC8I GCNNGC 3 cut(s) 62, 132, 311
BstDEI CTNAG 2 cut(s) 272, 373
BstF5I GGATG 1 cut(s) 408
BstHHI GCGC 2 cut(s) 221, 278
BstKTI GATC 3 cut(s) 493, 673, 894
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 490, 670, 891
BstMCI CGRYCG 1 cut(s) 753
BstMWI GCNNNNNNNGC 4 cut(s) 70, 162, 287, 673
BstNI CCWGG 2 cut(s) 226, 630
BstSCI CCNGG 2 cut(s) 224, 628
BstV1I GCAGC 4 cut(s) 233, 233, 290, 293
BstX2I RGATCY 2 cut(s) 490, 891
BstXI CCANNNNNNTGG 2 cut(s) 159, 240
BstYI RGATCY 2 cut(s) 490, 891
BstZI CGGCCG 1 cut(s) 750
BsuI GTATCC 1 cut(s) 518
BsuRI GGCC 2 cut(s) 137, 752
BtsCI GGATG 1 cut(s) 408
BtsIMutI CAGTG 1 cut(s) 441
Cac8I GCNNGC 3 cut(s) 62, 132, 311
CaiI CAGNNNCTG 1 cut(s) 194
CfoI GCGC 2 cut(s) 221, 278
Cfr10I RCCGGY 2 cut(s) 130, 752
Csp6I GTAC 5 cut(s) 55, 172, 269, 542, 910
CviAII CATG 2 cut(s) 121, 316
CviQI GTAC 5 cut(s) 55, 172, 269, 542, 910
DdeI CTNAG 2 cut(s) 272, 373
DpnI GATC 3 cut(s) 492, 672, 893
DpnII GATC 3 cut(s) 490, 670, 891
EaeI YGGCCR 1 cut(s) 750
EagI CGGCCG 1 cut(s) 750
EclXI CGGCCG 1 cut(s) 750
Eco130I CCWWGG 1 cut(s) 74
Eco32I GATATC 2 cut(s) 303, 806
Eco52I CGGCCG 1 cut(s) 750
Eco57I CTGAAG 2 cut(s) 152, 307
Eco72I CACGTG 1 cut(s) 822
EcoRII CCWGG 2 cut(s) 224, 628
EcoRV GATATC 2 cut(s) 303, 806
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 2 cut(s) 124, 319
FaiI YATR 9 cut(s) 71, 122, 206, 317, 496, 498, 678, 740, 920
FaqI GGGAC 2 cut(s) 70, 248
FatI CATG 2 cut(s) 120, 315
FauNDI CATATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 750
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 750
FspBI CTAG 4 cut(s) 75, 342, 419, 809
GlaI GCGC 2 cut(s) 220, 277
GluI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 750
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 2 cut(s) 137, 752
HapII CCGG 2 cut(s) 131, 753
HhaI GCGC 2 cut(s) 221, 278
Hin1II CATG 2 cut(s) 124, 319
Hin6I GCGC 2 cut(s) 219, 276
HinP1I GCGC 2 cut(s) 219, 276
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 6 cut(s) 254, 329, 500, 684, 794, 898
HpaII CCGG 2 cut(s) 131, 753
HphI GGTGA 2 cut(s) 109, 177
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 419, 504, 895
Hpy8I GTNNAC 1 cut(s) 688
HpyAV CCTTC 3 cut(s) 176, 572, 912
HpyCH4III ACNGT 1 cut(s) 445
HpyCH4IV ACGT 4 cut(s) 53, 125, 821, 908
HpyCH4V TGCA 3 cut(s) 10, 238, 408
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 162, 287, 673
HpyF3I CTNAG 2 cut(s) 272, 373
HpySE526I ACGT 4 cut(s) 53, 125, 821, 908
Hsp92II CATG 2 cut(s) 124, 319
HspAI GCGC 2 cut(s) 219, 276
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 3 cut(s) 490, 670, 891
LmnI GCTCC 3 cut(s) 162, 214, 243
Lsp1109I GCAGC 4 cut(s) 233, 233, 290, 293
LweI GCATC 3 cut(s) 187, 412, 694
MaeI CTAG 4 cut(s) 75, 342, 419, 809
MaeII ACGT 4 cut(s) 53, 125, 821, 908
MaeIII GTNAC 2 cut(s) 183, 581
MalI GATC 3 cut(s) 492, 672, 893
MboI GATC 3 cut(s) 490, 670, 891
MboII GAAGA 3 cut(s) 313, 579, 713
MflI RGATCY 2 cut(s) 490, 891
MluCI AATT 5 cut(s) 4, 475, 616, 929, 936
MlyI GAGTC 3 cut(s) 338, 693, 788
MmeI TCCRAC 3 cut(s) 319, 455, 822
MnlI CCTC 6 cut(s) 54, 148, 379, 481, 515, 631
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 3 cut(s) 101, 777, 943
MslI CAYNNNNRTG 3 cut(s) 157, 238, 824
MspI CCGG 2 cut(s) 131, 753
MspR9I CCNGG 2 cut(s) 226, 630
MvaI CCWGG 2 cut(s) 226, 630
MwoI GCNNNNNNNGC 4 cut(s) 70, 162, 287, 673
NaeI GCCGGC 1 cut(s) 132
NdeI CATATG 1 cut(s) 496
NdeII GATC 3 cut(s) 490, 670, 891
NgoMIV GCCGGC 1 cut(s) 130
NlaIII CATG 2 cut(s) 124, 319
NlaIV GGNNCC 3 cut(s) 164, 492, 893
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 183, 581
OliI CACNNNNGTG 1 cut(s) 824
PdiI GCCGGC 1 cut(s) 132
PfeI GAWTC 3 cut(s) 254, 500, 898
Pfl23II CGTACG 1 cut(s) 54
PkrI GCNGC 7 cut(s) 136, 223, 248, 280, 283, 371, 751
PleI GAGTC 3 cut(s) 337, 692, 788
PmaCI CACGTG 1 cut(s) 822
PmlI CACGTG 1 cut(s) 822
PpsI GAGTC 3 cut(s) 337, 692, 788
Ppu21I YACGTR 1 cut(s) 822
Psp6I CCWGG 2 cut(s) 224, 628
PspCI CACGTG 1 cut(s) 822
PspGI CCWGG 2 cut(s) 224, 628
PspLI CGTACG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 164, 492, 893
PsrI GAACNNNNNNTAC 2 cut(s) 9, 41
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 2 cut(s) 490, 891
RsaI GTAC 5 cut(s) 56, 173, 270, 543, 911
RsaNI GTAC 5 cut(s) 55, 172, 269, 542, 910
RseI CAYNNNNRTG 3 cut(s) 157, 238, 824
SaqAI TTAA 3 cut(s) 101, 777, 943
SatI GCNGC 7 cut(s) 135, 222, 247, 279, 282, 370, 750
Sau3AI GATC 3 cut(s) 490, 670, 891
ScaI AGTACT 2 cut(s) 173, 270
SchI GAGTC 3 cut(s) 338, 693, 788
ScrFI CCNGG 2 cut(s) 226, 630
SfaNI GCATC 3 cut(s) 187, 412, 694
SmiMI CAYNNNNRTG 3 cut(s) 157, 238, 824
Sse9I AATT 5 cut(s) 4, 475, 616, 929, 936
SsiI CCGC 4 cut(s) 134, 369, 380, 749
SspMI CTAG 4 cut(s) 75, 342, 419, 809
StyD4I CCNGG 2 cut(s) 224, 628
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 445
TaiI ACGT 4 cut(s) 56, 128, 824, 911
TaqI TCGA 1 cut(s) 305
TasI AATT 5 cut(s) 4, 475, 616, 929, 936
TatI WGTACW 2 cut(s) 171, 268
TauI GCSGC 3 cut(s) 137, 372, 752
TfiI GAWTC 3 cut(s) 254, 500, 898
Tru1I TTAA 3 cut(s) 101, 777, 943
Tru9I TTAA 3 cut(s) 101, 777, 943
TscAI CASTG 1 cut(s) 448
TseFI GTSAC 2 cut(s) 183, 581
TseI GCWGC 4 cut(s) 221, 246, 278, 281
Tsp45I GTSAC 2 cut(s) 183, 581
TspDTI ATGAA 2 cut(s) 17, 513
TspGWI ACGGA 2 cut(s) 761, 816
TspRI CASTG 1 cut(s) 448
XapI RAATTY 3 cut(s) 4, 475, 616
XbaI TCTAGA 1 cut(s) 418
XmaJI CCTAGG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 4 cut(s) 75, 342, 419, 809
ZrmI AGTACT 2 cut(s) 173, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.