Rh4CG292200

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Forward (+)
55051416 .. 55071493
20078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG292200.1

Sequence Viewer

Length: 939 bp
ATGACTAGTCTCAACTTCGATGACCAAGACGGTGTTTTGAGATCGATTACGGATGCACCACCAACTCATTACACACTAAAAATAGAGTCACTTTCGGTGCTGAACAAAAATTCATTGGAGAAATATGAATCAGGGGAATTCGGAGCAGGAGGATACAAATGGAAACTTGTTTTCTATCCAAATGGAAACAAGAGAAAGAATGTTAAAGACCACATTTCCCTCTACCTGGTAATGGCTGGAGCAAATACTTCCCAGATACATTGGGGTGTACATGCTGTTTTCAGACTGTTTTTGCTGGATCAGAATACCGGCAACTACTTAGTTTTTCAGGAACAAAAGGAGAGGCACTTTCATGCAATGAAGCTTGATTGGGGTTTCGATCAGTTTCTCTCCGTCAAAGCTTTTAATGAAGCTTCCAATGGATTTCTCATGGATGATACTTGTGTGTTTGGGGCAGACGTCTTTGTTTCTAAGGAAAGAAGCATGGGCAAAGGAGAGTGTCTATCTATGGTGAAGGACGCTGTTATGTACAAACATGTTTGGAAGATTGACAGCTTCTCAAAGATAAACACAGACTGCCATGACTCCAAAACTTTCAGTTCTGGAGACCAAAACTGGAAGATACAACTCTATCCCAAGGGTAAAGGCATTGGAACGGGTAGTCATCTTTCCCTATATTTGGCATTGGCTGATCCTACTTCTCTACCTCGTGATACTAAAATATATACAGAGTTTACCCTGCGCATCCTTGAACAGACGCATCAAAGGCATCAGCATGGTAAAGCTAGCTTCTGGTTTAGTGCTTCAGATCCAGAAAGGGGTTGGCAGAAATTCATTACACTAGGCTTTCTCAGTCAGACAACCATGGGGTTTCTGTTGAAGGATACATGCATTGTGGAGGCAGAGGTCACCGTCCATGGAATTTCTAATGCACTATAG

Protein Analysis

312

Amino Acids

35.39

Weight (kDa)

7.22

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 23 - 154 1.8e-36 MATH domain
MATH PF00917 31 - 155 4.4e-10 MATH domain
TRAF-mep_MATH PF21355 50 - 147 3.9e-07 TRAF/meprin, MATH domain
MATH_2 PF22486 178 - 303 2.6e-31 MATH domain
MATH PF00917 183 - 305 8.8e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
Acc16I TGCGCA 1 cut(s) 743
AclWI GGATC 3 cut(s) 306, 686, 803
AcsI RAATTY 4 cut(s) 109, 137, 830, 921
AcuI CTGAAG 1 cut(s) 789
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 2 cut(s) 270, 530
AfiI CCNNNNNNNGG 4 cut(s) 226, 232, 679, 818
AflIII ACRYGT 1 cut(s) 535
AgsI TTSAA 2 cut(s) 752, 880
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 6 cut(s) 364, 401, 413, 555, 785, 789
AluI AGCT 6 cut(s) 364, 401, 413, 555, 785, 789
Alw26I GTCTC 2 cut(s) 14, 600
AlwI GGATC 3 cut(s) 306, 686, 803
ApoI RAATTY 4 cut(s) 109, 137, 830, 921
AspLEI GCGC 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 523, 901
AsuNHI GCTAGC 1 cut(s) 785
BaeI ACNNNNGTAYC 2 cut(s) 429, 462
BauI CACGAG 1 cut(s) 708
BciT130I CCWGG 1 cut(s) 227
BciVI GTATCC 2 cut(s) 146, 877
BcoDI GTCTC 2 cut(s) 14, 600
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 3 cut(s) 6, 786, 842
BfmI CTRYAG 1 cut(s) 935
BfuI GTATCC 2 cut(s) 146, 877
Bme1390I CCNGG 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 227
BmsI GCATC 4 cut(s) 43, 753, 769, 778
BmtI GCTAGC 1 cut(s) 789
BpmI CTGGAG 2 cut(s) 258, 624
Bsa29I ATCGAT 1 cut(s) 44
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 600
BsaJI CCNNGG 3 cut(s) 636, 864, 916
Bsc4I CCNNNNNNNGG 4 cut(s) 226, 232, 679, 818
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 1 cut(s) 227
BseCI ATCGAT 1 cut(s) 44
BseDI CCNNGG 3 cut(s) 636, 864, 916
BseGI GGATG 3 cut(s) 58, 439, 744
BseLI CCNNNNNNNGG 4 cut(s) 226, 232, 679, 818
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 865
BseNI ACTGG 1 cut(s) 620
BshVI ATCGAT 1 cut(s) 44
BsiSI CCGG 1 cut(s) 309
BslI CCNNNNNNNGG 4 cut(s) 226, 232, 679, 818
BsmAI GTCTC 2 cut(s) 14, 600
Bso31I GGTCTC 1 cut(s) 600
Bsp1407I TGTACA 2 cut(s) 268, 528
Bsp143I GATC 5 cut(s) 41, 298, 379, 691, 808
Bsp19I CCATGG 2 cut(s) 864, 916
BspCNI CTCAG 1 cut(s) 864
BspDI ATCGAT 1 cut(s) 44
BspOI GCTAGC 1 cut(s) 789
BspPI GGATC 3 cut(s) 306, 686, 803
BspTNI GGTCTC 1 cut(s) 600
BsrDI GCAATG 1 cut(s) 363
BsrFI RCCGGY 1 cut(s) 308
BsrGI TGTACA 2 cut(s) 268, 528
BsrI ACTGG 1 cut(s) 620
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 3 cut(s) 636, 864, 916
BssMI GATC 5 cut(s) 41, 298, 379, 691, 808
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 708
BssT1I CCWWGG 3 cut(s) 636, 864, 916
Bst2BI CACGAG 1 cut(s) 708
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 3 cut(s) 32, 288, 913
BstACI GRCGYC 1 cut(s) 459
BstAUI TGTACA 2 cut(s) 268, 528
BstC8I GCNNGC 1 cut(s) 787
BstDEI CTNAG 3 cut(s) 319, 471, 851
BstDSI CCRYGG 2 cut(s) 864, 916
BstEII GGTNACC 1 cut(s) 907
BstF5I GGATG 3 cut(s) 58, 439, 744
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 5 cut(s) 44, 301, 382, 694, 811
BstMAI GTCTC 2 cut(s) 14, 600
BstMBI GATC 5 cut(s) 41, 298, 379, 691, 808
BstMWI GCNNNNNNNGC 1 cut(s) 766
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 3 cut(s) 275, 539, 891
BstPI GGTNACC 1 cut(s) 907
BstSCI CCNGG 1 cut(s) 225
BstSFI CTRYAG 1 cut(s) 935
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
Bsu15I ATCGAT 1 cut(s) 44
BsuI GTATCC 2 cut(s) 146, 877
BsuTUI ATCGAT 1 cut(s) 44
BtgI CCRYGG 2 cut(s) 864, 916
BtsCI GGATG 3 cut(s) 58, 439, 744
Cac8I GCNNGC 1 cut(s) 787
CfoI GCGC 1 cut(s) 744
Cfr10I RCCGGY 1 cut(s) 308
ClaI ATCGAT 1 cut(s) 44
CseI GACGC 2 cut(s) 527, 766
CsiI ACCWGGT 1 cut(s) 225
Csp6I GTAC 2 cut(s) 269, 529
CviJI RGCY 9 cut(s) 236, 364, 401, 413, 555, 689, 785, 789, 846
CviKI_1 RGCY 9 cut(s) 236, 364, 401, 413, 555, 689, 785, 789, 846
CviQI GTAC 2 cut(s) 269, 529
DdeI CTNAG 3 cut(s) 319, 471, 851
DpnI GATC 5 cut(s) 43, 300, 381, 693, 810
DpnII GATC 5 cut(s) 41, 298, 379, 691, 808
Eco130I CCWWGG 3 cut(s) 636, 864, 916
Eco31I GGTCTC 1 cut(s) 600
Eco57I CTGAAG 1 cut(s) 789
Eco91I GGTNACC 1 cut(s) 907
EcoO65I GGTNACC 1 cut(s) 907
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 3 cut(s) 636, 864, 916
EcoT22I ATGCAT 1 cut(s) 893
ErhI CCWWGG 3 cut(s) 636, 864, 916
FokI GGATG 3 cut(s) 65, 446, 731
FspBI CTAG 3 cut(s) 6, 786, 842
FspI TGCGCA 1 cut(s) 743
GlaI GCGC 1 cut(s) 743
GsuI CTGGAG 2 cut(s) 258, 624
HapII CCGG 1 cut(s) 309
HgaI GACGC 2 cut(s) 527, 766
HhaI GCGC 1 cut(s) 744
Hin1I GRCGYC 1 cut(s) 459
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HindIII AAGCTT 3 cut(s) 362, 399, 411
HinfI GANTC 3 cut(s) 86, 128, 584
HpaII CCGG 1 cut(s) 309
HphI GGTGA 2 cut(s) 523, 901
Hpy166II GTNNAC 2 cut(s) 269, 735
Hpy188I TCNGA 5 cut(s) 143, 284, 303, 808, 858
Hpy188III TCNNGA 4 cut(s) 329, 603, 710, 812
Hpy8I GTNNAC 2 cut(s) 269, 735
HpyAV CCTTC 2 cut(s) 508, 874
HpyCH4III ACNGT 3 cut(s) 32, 288, 913
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 4 cut(s) 56, 356, 891, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 766
HpyF3I CTNAG 3 cut(s) 319, 471, 851
HpySE526I ACGT 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 459
HspAI GCGC 1 cut(s) 742
Kzo9I GATC 5 cut(s) 41, 298, 379, 691, 808
LmnI GCTCC 2 cut(s) 143, 239
LweI GCATC 4 cut(s) 43, 753, 769, 778
MabI ACCWGGT 1 cut(s) 225
MaeI CTAG 3 cut(s) 6, 786, 842
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 2 cut(s) 87, 907
MalI GATC 5 cut(s) 43, 300, 381, 693, 810
MboI GATC 5 cut(s) 41, 298, 379, 691, 808
MboII GAAGA 2 cut(s) 556, 631
MflI RGATCY 1 cut(s) 808
MluCI AATT 4 cut(s) 109, 137, 830, 921
MlyI GAGTC 2 cut(s) 95, 578
MnlI CCTC 6 cut(s) 143, 230, 336, 717, 892, 898
Mph1103I ATGCAT 1 cut(s) 893
MseI TTAA 2 cut(s) 204, 405
MslI CAYNNNNRTG 3 cut(s) 264, 351, 774
MspI CCGG 1 cut(s) 309
MspR9I CCNGG 1 cut(s) 227
MvaI CCWGG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 766
NcoI CCATGG 2 cut(s) 864, 916
NdeII GATC 5 cut(s) 41, 298, 379, 691, 808
NheI GCTAGC 1 cut(s) 785
NmuCI GTSAC 2 cut(s) 87, 907
NsbI TGCGCA 1 cut(s) 743
NsiI ATGCAT 1 cut(s) 893
NspI RCATGY 3 cut(s) 275, 539, 891
PciI ACATGT 1 cut(s) 535
PfeI GAWTC 1 cut(s) 128
PleI GAGTC 2 cut(s) 94, 578
PpsI GAGTC 2 cut(s) 94, 578
PscI ACATGT 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 225
PspEI GGTNACC 1 cut(s) 907
PspGI CCWGG 1 cut(s) 225
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 2 cut(s) 270, 530
RsaNI GTAC 2 cut(s) 269, 529
RseI CAYNNNNRTG 3 cut(s) 264, 351, 774
SaqAI TTAA 2 cut(s) 204, 405
Sau3AI GATC 5 cut(s) 41, 298, 379, 691, 808
SchI GAGTC 2 cut(s) 95, 578
ScrFI CCNGG 1 cut(s) 227
SexAI ACCWGGT 1 cut(s) 225
SfaNI GCATC 4 cut(s) 43, 753, 769, 778
SfcI CTRYAG 1 cut(s) 935
SmiMI CAYNNNNRTG 3 cut(s) 264, 351, 774
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 4 cut(s) 109, 137, 830, 921
SspMI CTAG 3 cut(s) 6, 786, 842
StyD4I CCNGG 1 cut(s) 225
StyI CCWWGG 3 cut(s) 636, 864, 916
TaaI ACNGT 3 cut(s) 32, 288, 913
TaiI ACGT 1 cut(s) 462
TaqI TCGA 3 cut(s) 18, 44, 378
TasI AATT 4 cut(s) 109, 137, 830, 921
TatI WGTACW 2 cut(s) 268, 528
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 2 cut(s) 204, 405
Tru9I TTAA 2 cut(s) 204, 405
TseFI GTSAC 2 cut(s) 87, 907
Tsp45I GTSAC 2 cut(s) 87, 907
TspDTI ATGAA 6 cut(s) 102, 141, 341, 374, 423, 823
TspGWI ACGGA 2 cut(s) 65, 382
XapI RAATTY 4 cut(s) 109, 137, 830, 921
XceI RCATGY 3 cut(s) 275, 539, 891
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XspI CTAG 3 cut(s) 6, 786, 842
ZraI GACGTC 1 cut(s) 460
Zsp2I ATGCAT 1 cut(s) 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.