Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

37304814 .. 37305374

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0215600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAGGGAAATTCTGGCATATCAAATGGAAGAGAAGGCGGTGATGAGGTCTTTACCATCACCCTCAGGCCTTTGGGTCTTTCTGACATTGATGATTTCATGGTTTGGGGCACAGATGAGAAAGTAGTGTCTCGTTTCTGCACTTGGGAGCCTTATGCTAGCAAAGAAGAGGGGCTCAACTACATCAAGGATAAGATCCTCCCACACCCCTGGTATAAGGCAATTTGTCTTGATGGCAGGCCGATTGGTGAAATTTCAGTGACCCCAAAATGGGGAAATGATCGGTGTAGAGCTGAAATTGGCTATCTCTTGGGGTCCAAGGACTGGGGCAAAGGGATAGCTACAAGGGCAGTGAAGATGGTGGTTGATACTATTTTCAAGGAGTGGACACATTTGGAGAGACTGGAAGCTTTCGTTGATGTGGAGAATGTGGCATCACAGAGGGTCATGGAAAAGACTGGGTTTCAAAGGGAAGGCGTTTTGAGAAAGCATTATATTGTGAAAGGTAGAACTATAGACGAGGTGATTTTTAGTATTCTTTCCACTGAATGTGAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

186

Amino Acids

21.12

Weight (kDa)

5.72

Isoelectric Point (pI)

19.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_3	PF13302	20 - 156	5.6e-25	Acetyltransferase (GNAT) domain
Acetyltransf_4	PF13420	42 - 176	1.6e-06	Acetyltransferase (GNAT) domain
Acetyltransf_1	PF00583	66 - 155	1.7e-10	Acetyltransferase (GNAT) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	324
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	10, 252
AfiI	CCNNNNNNNGG	4 cut(s)	270, 271, 272, 324
AgsI	TTSAA	2 cut(s)	379, 467
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	4 cut(s)	293, 341, 410, 558
AluI	AGCT	4 cut(s)	293, 341, 410, 558
Alw26I	GTCTC	2 cut(s)	135, 394
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	2 cut(s)	68, 239
ApoI	RAATTY	2 cut(s)	10, 252
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	4 cut(s)	52, 53, 260, 535
AsuNHI	GCTAGC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	315
AxyI	CCTNAGG	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	177
BccI	CCATC	3 cut(s)	65, 227, 352
BciT130I	CCWGG	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	135, 394
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	1 cut(s)	513
Bme1390I	CCNGG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	315
BmgT120I	GGNCC	1 cut(s)	315
BmiI	GGNNCC	2 cut(s)	150, 316
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	2 cut(s)	334, 468
BmsI	GCATC	1 cut(s)	443
BmtI	GCTAGC	1 cut(s)	162
BmuI	ACTGGG	2 cut(s)	334, 468
BsaJI	CCNNGG	2 cut(s)	209, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	270, 271, 272, 324
Bse1I	ACTGG	3 cut(s)	329, 408, 463
Bse21I	CCTNAGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	211
BseDI	CCNNGG	2 cut(s)	209, 318
BseLI	CCNNNNNNNGG	4 cut(s)	270, 271, 272, 324
BseMII	CTCAG	1 cut(s)	79
BseNI	ACTGG	3 cut(s)	329, 408, 463
BseSI	GKGCMC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	70, 241
BslI	CCNNNNNNNGG	4 cut(s)	270, 271, 272, 324
BsmAI	GTCTC	2 cut(s)	135, 394
BsnI	GGCC	2 cut(s)	70, 241
Bsp1286I	GDGCHC	2 cut(s)	113, 177
Bsp143I	GATC	2 cut(s)	195, 280
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	70, 241
BspCNI	CTCAG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	150, 316
BspOI	GCTAGC	1 cut(s)	162
BspPI	GGATC	1 cut(s)	190
BsrI	ACTGG	3 cut(s)	329, 408, 463
BssECI	CCNNGG	2 cut(s)	209, 318
BssMI	GATC	2 cut(s)	195, 280
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	25, 162
BstC8I	GCNNGC	2 cut(s)	160, 239
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	2 cut(s)	198, 283
BstMAI	GTCTC	2 cut(s)	135, 394
BstMBI	GATC	2 cut(s)	195, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	209
BstSFI	CTRYAG	1 cut(s)	513
BstSLI	GKGCMC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	195
BstXI	CCANNNNNNTGG	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	195
Bsu36I	CCTNAGG	1 cut(s)	65
BsuRI	GGCC	2 cut(s)	70, 241
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	264, 357, 543
Cac8I	GCNNGC	2 cut(s)	160, 239
Cfr13I	GGNCC	1 cut(s)	315
CviAII	CATG	2 cut(s)	100, 448
CviJI	RGCY	9 cut(s)	70, 151, 175, 241, 293, 303, 341, 410, 558
CviKI_1	RGCY	9 cut(s)	70, 151, 175, 241, 293, 303, 341, 410, 558
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	2 cut(s)	197, 282
DpnII	GATC	2 cut(s)	195, 280
Eam1104I	CTCTTC	2 cut(s)	25, 162
EarI	CTCTTC	2 cut(s)	25, 162
Eco130I	CCWWGG	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	103, 451
FaiI	YATR	7 cut(s)	20, 101, 156, 216, 449, 495, 515
FatI	CATG	2 cut(s)	99, 447
FriOI	GRGCYC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	70, 241
Hin1II	CATG	2 cut(s)	103, 451
HindIII	AAGCTT	1 cut(s)	408
HphI	GGTGA	4 cut(s)	52, 53, 260, 535
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	1 cut(s)	85
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	2 cut(s)	29, 467
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	103, 451
Kzo9I	GATC	2 cut(s)	195, 280
LmnI	GCTCC	1 cut(s)	148
LpnPI	CCDG	7 cut(s)	52, 196, 223, 223, 310, 389, 444
LweI	GCATC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	2 cut(s)	197, 282
MboI	GATC	2 cut(s)	195, 280
MboII	GAAGA	3 cut(s)	42, 179, 367
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	2 cut(s)	113, 177
MluCI	AATT	4 cut(s)	10, 222, 252, 297
MnlI	CCTC	6 cut(s)	40, 74, 163, 209, 435, 514
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	2 cut(s)	195, 280
NheI	GCTAGC	1 cut(s)	158
NlaIII	CATG	2 cut(s)	103, 451
NlaIV	GGNNCC	2 cut(s)	150, 316
NmuCI	GTSAC	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	70
PflMI	CCANNNNNTGG	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	150, 316
PspPI	GGNCC	1 cut(s)	315
PsuI	RGATCY	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	195, 280
Sau96I	GGNCC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	113, 177
SetI	ASST	7 cut(s)	51, 295, 343, 412, 508, 525, 560
SfaNI	GCATC	1 cut(s)	443
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	1 cut(s)	315
Sse9I	AATT	4 cut(s)	10, 222, 252, 297
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	159
StuI	AGGCCT	1 cut(s)	70
StyD4I	CCNGG	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	318
TasI	AATT	4 cut(s)	10, 222, 252, 297
TscAI	CASTG	3 cut(s)	264, 357, 550
TseFI	GTSAC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	2 cut(s)	17, 88
TspRI	CASTG	3 cut(s)	264, 357, 550
Van91I	CCANNNNNTGG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	315
XapI	RAATTY	2 cut(s)	10, 252
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.