Rh7AG411500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000185
Physical Location & Seq
Reverse (-)
55093827 .. 55100006
6180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG411500.1

Sequence Viewer

Length: 216 bp
ATGAGTTCATCGGGTCGCTGCCCGGCATGGTTCATCCGGACGCTGCCTGGCACGGTCATCGGAGGCGCTGCTCCGGCATGGTTTCATCGGGACGCTGCCCGGCATGTTGGCTTTGACATCATTGACACCCGAAGGTGCCGTTGTGAGGAGGGCTGCAACAGAAAAGAGAAGGTGGTGGAGAGCAATGGAATGAGTAAGCAATTAATAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.92

Weight (kDa)

8.91

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 36
AfiI CCNNNNNNNGG 1 cut(s) 145
AjnI CCWGG 1 cut(s) 46
Aor13HI TCCGGA 1 cut(s) 36
ApeKI GCWGC 5 cut(s) 18, 43, 68, 95, 153
AseI ATTAAT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 68
AsuC2I CCSGG 2 cut(s) 23, 100
BanI GGYRCC 1 cut(s) 135
BbvI GCAGC 5 cut(s) 5, 30, 55, 82, 140
BceAI ACGGC 1 cut(s) 123
BcgI CGANNNNNNTGC 2 cut(s) 40, 74
BciT130I CCWGG 1 cut(s) 48
BcnI CCSGG 2 cut(s) 23, 100
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 5 cut(s) 19, 44, 69, 96, 154
BlsI GCNGC 5 cut(s) 20, 45, 70, 97, 155
Bme1390I CCNGG 3 cut(s) 23, 48, 100
BmiI GGNNCC 1 cut(s) 137
BmrFI CCNGG 3 cut(s) 23, 48, 100
BpuMI CCSGG 2 cut(s) 23, 100
BsaWI WCCGGW 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 190
BseAI TCCGGA 1 cut(s) 36
BseBI CCWGG 1 cut(s) 48
BseGI GGATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 5 cut(s) 5, 30, 55, 82, 140
BshNI GGYRCC 1 cut(s) 135
BsiSI CCGG 4 cut(s) 23, 37, 74, 100
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 104
Bsp13I TCCGGA 1 cut(s) 36
Bsp143I GATC 1 cut(s) 208
BspEI TCCGGA 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 137
BspT107I GGYRCC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 190
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 55
BstF5I GGATG 1 cut(s) 33
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 3 cut(s) 21, 46, 98
BstV1I GCAGC 5 cut(s) 5, 30, 55, 82, 140
BtsCI GGATG 1 cut(s) 33
CfoI GCGC 1 cut(s) 68
CseI GACGC 2 cut(s) 49, 101
CviAII CATG 3 cut(s) 27, 78, 104
CviJI RGCY 2 cut(s) 111, 153
CviKI_1 RGCY 2 cut(s) 111, 153
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 30, 81, 107
FaiI YATR 3 cut(s) 28, 79, 105
FaqI GGGAC 1 cut(s) 104
FatI CATG 3 cut(s) 26, 77, 103
Fnu4HI GCNGC 5 cut(s) 19, 44, 69, 96, 154
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 5 cut(s) 19, 44, 69, 96, 154
GlaI GCGC 1 cut(s) 67
GluI GCNGC 5 cut(s) 19, 44, 69, 96, 154
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 4 cut(s) 23, 37, 74, 100
HgaI GACGC 2 cut(s) 49, 101
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 30, 81, 107
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HpaII CCGG 4 cut(s) 23, 37, 74, 100
Hpy188I TCNGA 1 cut(s) 62
Hpy188III TCNNGA 2 cut(s) 37, 89
HpyAV CCTTC 2 cut(s) 126, 163
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
Hsp92II CATG 3 cut(s) 30, 81, 107
HspAI GCGC 1 cut(s) 66
Kpn2I TCCGGA 1 cut(s) 36
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 33, 36, 50, 60, 87, 113
Lsp1109I GCAGC 5 cut(s) 5, 30, 55, 82, 140
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MluCI AATT 1 cut(s) 200
MnlI CCTC 3 cut(s) 56, 139, 142
MroI TCCGGA 1 cut(s) 36
MseI TTAA 1 cut(s) 203
MspI CCGG 4 cut(s) 23, 37, 74, 100
MspR9I CCNGG 3 cut(s) 23, 48, 100
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 74
NciI CCSGG 2 cut(s) 23, 100
NdeII GATC 1 cut(s) 208
NlaIII CATG 3 cut(s) 30, 81, 107
NlaIV GGNNCC 1 cut(s) 137
NspI RCATGY 1 cut(s) 107
PkrI GCNGC 5 cut(s) 20, 45, 70, 97, 155
PshBI ATTAAT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 137
SaqAI TTAA 1 cut(s) 203
SatI GCNGC 5 cut(s) 19, 44, 69, 96, 154
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 3 cut(s) 23, 48, 100
SetI ASST 2 cut(s) 137, 174
Sse9I AATT 1 cut(s) 200
StyD4I CCNGG 3 cut(s) 21, 46, 98
TaaI ACNGT 1 cut(s) 55
TasI AATT 1 cut(s) 200
Tru1I TTAA 1 cut(s) 203
Tru9I TTAA 1 cut(s) 203
TseI GCWGC 5 cut(s) 18, 43, 68, 95, 153
TspDTI ATGAA 2 cut(s) 22, 74
VspI ATTAAT 1 cut(s) 203
XceI RCATGY 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.