Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

111689 .. 112886

Gene Structure 1198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atgctgcgcttgcctggttttgataggcttatgcctcttgaagagtttactaatgcctccaatggatatgtagttgatgacacctgcgtgtttggtgctgaggtctttgtttgtaaagaaagaacaaaaggcaaaagagagcgtttattaacgacaaacaatgcagttatgtacaggcaggtttggaaggttgagaacttttcaaagctagatgatccattctataagtcagaaccattcgttgctggaaaccagaaatggcagggtgaatttaattgttcttcatgtgttgattgcagggagatacagttctatgacttctatcccaagggaattgcccacggaatggggactcatctttctctttacttggcattatttgattttaaaccaactcctcctgtgttcaagatatttgcagagttttgcctgcgtattgtagatcgaaagcatgccaatcataagacatggtcaggaagtgactatatttttttgttctgcttgcaggtaaacactgtttcagtgccacgtcttcctcttggggtttgcctaagttcattagagcaagttcaccggtgtagttttgaccgggcaccagcaaggattgatgatgtgttgatcgggcaaggggaaaatcatccctccactggcccaatcttgcccagccaagatttggctttccttgaccaaggccaagaaaaaaggcaaagccttgacatatttcctgaccaagctcgtcggctgccagctcggcaggtacctatcgtggctgacatcagcgtgttgtgtggagagagagacgcaaagaaggacgatgatcggattggatctgatttgctccgcctagagttgcttcgatctcggcctgggggcagcggatgggcgggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

296

Amino Acids

33.56

Weight (kDa)

6.6

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc36I	ACCTGC	4 cut(s)	92, 169, 496, 745
Acc65I	GGTACC	1 cut(s)	757
AccB1I	GGYRCC	2 cut(s)	592, 757
AccB7I	CCANNNNNTGG	2 cut(s)	346, 673
AciI	CCGC	3 cut(s)	841, 876, 884
AclWI	GGATC	2 cut(s)	209, 835
AcsI	RAATTY	1 cut(s)	269
AfaI	GTAC	2 cut(s)	173, 759
AfiI	CCNNNNNNNGG	3 cut(s)	346, 647, 673
AgeI	ACCGGT	1 cut(s)	573
AgsI	TTSAA	3 cut(s)	41, 204, 409
AjiI	CACGTC	1 cut(s)	530
AjnI	CCWGG	2 cut(s)	13, 865
AleI	CACNNNNGTG	1 cut(s)	86
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	3 cut(s)	208, 734, 749
AluI	AGCT	3 cut(s)	208, 734, 749
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	2 cut(s)	209, 835
AoxI	GGCC	3 cut(s)	649, 691, 863
ApeKI	GCWGC	3 cut(s)	4, 742, 873
ApoI	RAATTY	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	573
Asp718I	GGTACC	1 cut(s)	757
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	650
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	2 cut(s)	278, 563
BaeGI	GKGCMC	1 cut(s)	595
BanI	GGYRCC	2 cut(s)	592, 757
BbsI	GAAGAC	1 cut(s)	524
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	729, 885
BccI	CCATC	1 cut(s)	873
BciT130I	CCWGG	2 cut(s)	15, 867
BcnI	CCSGG	1 cut(s)	590
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	2 cut(s)	209, 845
BfuAI	ACCTGC	4 cut(s)	92, 169, 496, 745
BglI	GCCNNNNNGGC	1 cut(s)	751
BisI	GCNGC	3 cut(s)	5, 743, 874
BlsI	GCNGC	3 cut(s)	6, 744, 875
Bme1390I	CCNGG	3 cut(s)	15, 590, 867
BmgBI	CACGTC	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	650
BmiI	GGNNCC	2 cut(s)	594, 759
BmrFI	CCNGG	3 cut(s)	15, 590, 867
BpiI	GAAGAC	1 cut(s)	524
Bpu10I	CCTNAGC	1 cut(s)	99
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	4 cut(s)	327, 340, 688, 866
BsaWI	WCCGGW	1 cut(s)	573
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	3 cut(s)	346, 647, 673
Bse118I	RCCGGY	1 cut(s)	573
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	2 cut(s)	15, 867
BseDI	CCNNGG	4 cut(s)	327, 340, 688, 866
BseGI	GGATG	2 cut(s)	637, 884
BseLI	CCNNNNNNNGG	3 cut(s)	346, 647, 673
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	652
BseRI	GAGGAG	1 cut(s)	387
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	729, 885
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	3 cut(s)	651, 693, 865
BshNI	GGYRCC	2 cut(s)	592, 757
BshTI	ACCGGT	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	574, 589
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	3 cut(s)	346, 647, 673
BsmAI	GTCTC	1 cut(s)	792
BsmBI	CGTCTC	1 cut(s)	792
BsmFI	GGGAC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	651, 693, 865
Bsp1286I	GDGCHC	1 cut(s)	595
Bsp1407I	TGTACA	1 cut(s)	171
Bsp143I	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
BspACI	CCGC	3 cut(s)	841, 876, 884
BspANI	GGCC	3 cut(s)	651, 693, 865
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	2 cut(s)	594, 759
BspMI	ACCTGC	4 cut(s)	92, 169, 496, 745
BspPI	GGATC	2 cut(s)	209, 835
BspT107I	GGYRCC	2 cut(s)	592, 757
BsrFI	RCCGGY	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	652
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	4 cut(s)	327, 340, 688, 866
BssMI	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
BssT1I	CCWWGG	2 cut(s)	327, 688
Bst2UI	CCWGG	2 cut(s)	15, 867
Bst4CI	ACNGT	2 cut(s)	309, 517
Bst6I	CTCTTC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	171
BstC8I	GCNNGC	6 cut(s)	11, 431, 453, 503, 747, 886
BstDEI	CTNAG	2 cut(s)	99, 551
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	637, 884
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	6 cut(s)	217, 445, 621, 820, 830, 860
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 751
BstNI	CCWGG	2 cut(s)	15, 867
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	3 cut(s)	13, 588, 865
BstSLI	GKGCMC	1 cut(s)	595
BstV1I	GCAGC	2 cut(s)	729, 885
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	827
BstYI	RGATCY	1 cut(s)	827
BsuRI	GGCC	3 cut(s)	651, 693, 865
BtgI	CCRYGG	1 cut(s)	340
BtrI	CACGTC	1 cut(s)	530
BtsCI	GGATG	2 cut(s)	637, 884
BtsIMutI	CAGTG	3 cut(s)	513, 528, 645
BveI	ACCTGC	4 cut(s)	92, 169, 496, 745
Cac8I	GCNNGC	6 cut(s)	11, 431, 453, 503, 747, 886
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	1 cut(s)	573
Cfr13I	GGNCC	1 cut(s)	650
CseI	GACGC	1 cut(s)	809
Csp6I	GTAC	2 cut(s)	172, 758
CspAI	ACCGGT	1 cut(s)	573
CviAII	CATG	3 cut(s)	285, 452, 468
CviQI	GTAC	2 cut(s)	172, 758
DdeI	CTNAG	2 cut(s)	99, 551
DpnI	GATC	6 cut(s)	216, 444, 620, 819, 829, 859
DpnII	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
DraI	TTTAAA	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	830
Eco130I	CCWWGG	2 cut(s)	327, 688
EcoRII	CCWGG	2 cut(s)	13, 865
EcoT14I	CCWWGG	2 cut(s)	327, 688
ErhI	CCWWGG	2 cut(s)	327, 688
Esp3I	CGTCTC	1 cut(s)	792
FaeI	CATG	3 cut(s)	288, 455, 471
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	3 cut(s)	284, 451, 467
FauI	CCCGC	1 cut(s)	877
Fnu4HI	GCNGC	3 cut(s)	5, 743, 874
FokI	GGATG	1 cut(s)	624
Fsp4HI	GCNGC	3 cut(s)	5, 743, 874
FspBI	CTAG	2 cut(s)	209, 845
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	3 cut(s)	5, 743, 874
GsaI	CCCAGC	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	651, 693, 865
HapII	CCGG	2 cut(s)	574, 589
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	3 cut(s)	288, 455, 471
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	2 cut(s)	574, 589
HphI	GGTGA	2 cut(s)	278, 563
Hpy166II	GTNNAC	3 cut(s)	48, 511, 571
Hpy188I	TCNGA	3 cut(s)	232, 822, 832
Hpy188III	TCNNGA	4 cut(s)	38, 409, 474, 725
Hpy8I	GTNNAC	3 cut(s)	48, 511, 571
Hpy99I	CGWCG	1 cut(s)	741
HpyAV	CCTTC	2 cut(s)	181, 802
HpyCH4III	ACNGT	2 cut(s)	309, 517
HpyCH4IV	ACGT	1 cut(s)	529
HpyCH4V	TGCA	4 cut(s)	164, 297, 419, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 751
HpyF3I	CTNAG	2 cut(s)	99, 551
HpySE526I	ACGT	1 cut(s)	529
Hsp92II	CATG	3 cut(s)	288, 455, 471
HspAI	GCGC	1 cut(s)	7
KpnI	GGTACC	1 cut(s)	761
Kzo9I	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
LmnI	GCTCC	1 cut(s)	843
Lsp1109I	GCAGC	2 cut(s)	729, 885
MaeI	CTAG	2 cut(s)	209, 845
MaeII	ACGT	1 cut(s)	529
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	6 cut(s)	216, 444, 620, 819, 829, 859
MboI	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
MboII	GAAGA	3 cut(s)	53, 273, 524
MflI	RGATCY	1 cut(s)	827
MhlI	GDGCHC	1 cut(s)	595
MluCI	AATT	3 cut(s)	269, 274, 333
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	6 cut(s)	45, 67, 94, 408, 546, 652
MseI	TTAA	3 cut(s)	149, 273, 387
MslI	CAYNNNNRTG	2 cut(s)	86, 779
MspA1I	CMGCKG	1 cut(s)	876
MspI	CCGG	2 cut(s)	574, 589
MspR9I	CCNGG	3 cut(s)	15, 590, 867
MvaI	CCWGG	2 cut(s)	15, 867
MwoI	GCNNNNNNNGC	2 cut(s)	10, 751
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
NlaIII	CATG	3 cut(s)	288, 455, 471
NlaIV	GGNNCC	2 cut(s)	594, 759
NmeAIII	GCCGAG	2 cut(s)	730, 841
NmuCI	GTSAC	1 cut(s)	479
NspI	RCATGY	1 cut(s)	455
OliI	CACNNNNGTG	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	455
PaqCI	CACCTGC	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	469
PflMI	CCANNNNNTGG	2 cut(s)	346, 673
PinAI	ACCGGT	1 cut(s)	573
PkrI	GCNGC	3 cut(s)	6, 744, 875
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	13, 865
PspFI	CCCAGC	1 cut(s)	662
PspGI	CCWGG	2 cut(s)	13, 865
PspN4I	GGNNCC	2 cut(s)	594, 759
PspPI	GGNCC	1 cut(s)	650
PsuI	RGATCY	1 cut(s)	827
PsyI	GACNNNGTC	1 cut(s)	469
RsaI	GTAC	2 cut(s)	173, 759
RsaNI	GTAC	2 cut(s)	172, 758
RseI	CAYNNNNRTG	2 cut(s)	86, 779
SaqAI	TTAA	3 cut(s)	149, 273, 387
SatI	GCNGC	3 cut(s)	5, 743, 874
Sau3AI	GATC	6 cut(s)	214, 442, 618, 817, 827, 857
Sau96I	GGNCC	1 cut(s)	650
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	3 cut(s)	15, 590, 867
SduI	GDGCHC	1 cut(s)	595
SgrAI	CRCCGGYG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	86, 779
SphI	GCATGC	1 cut(s)	455
Sse9I	AATT	3 cut(s)	269, 274, 333
SsiI	CCGC	3 cut(s)	841, 876, 884
SspMI	CTAG	2 cut(s)	209, 845
StyD4I	CCNGG	3 cut(s)	13, 588, 865
StyI	CCWWGG	2 cut(s)	327, 688
TaaI	ACNGT	2 cut(s)	309, 517
TaiI	ACGT	1 cut(s)	532
TaqI	TCGA	2 cut(s)	445, 856
TasI	AATT	3 cut(s)	269, 274, 333
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	149, 273, 387
Tru9I	TTAA	3 cut(s)	149, 273, 387
TscAI	CASTG	3 cut(s)	520, 528, 652
TseFI	GTSAC	1 cut(s)	479
TseI	GCWGC	3 cut(s)	4, 742, 873
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	2 cut(s)	273, 546
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	3 cut(s)	520, 528, 652
Tth111I	GACNNNGTC	1 cut(s)	469
Van91I	CCANNNNNTGG	2 cut(s)	346, 673
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XspI	CTAG	2 cut(s)	209, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.