Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

51586684 .. 51588509

Gene Structure 1826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCTATCCTTAACTCAGACCAAGACGGCGTTTTCAGATCACTTTCAGATTCACTGCCAACTCATTGCAGTCTAAGTATAGAGTCGTTTTCCTTGCTAACTGAATATCATGGAGTCGATGGATATGAATCAAAAGAGTTTGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAAACTCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGGTTTTGATTGAAGAATTTAGGGATGCCTCTAATGGATATCTCGTTGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACAGGGCAAGCAGAGTGTATATCAAGGATAAAAGGCCCTTGTATGTACAAGCATGTTTGGGAGATTCAAAATTATTCTATGTTAAACGCTCCAGGCCACCAATCAGAACCATTCAATGTTGAAGGCCAAGATTGGATTATAGTACTCTATCCCGTGGGAAATCGCGAGGGGAAAGATTCTCATCTTTCTCTTTACTTGGGATTGGCTGATAAACAAACAACTCCTACTGTCACTAAAGTATATGCAGAGTTTTCCTTACGCATAGTAAATCAAAACCGTGCCAGCCATCAATCTGGTCCACTTTCTCAGTGGCTTGGGATTGCTAAAGAACCCTCAGAGGGGAGAGGACATTGTCCATACAATTGGGAAGGAGGGTTCATGCAGGTTCCCTGTCAATTCGTCTTTACTTCTCATGTTCTTGTCCACCTTCGTCATTGCGCTCAATCTACTTCGGTTGGCCAGGTAGAGCCATACAACAATCATGAGCGTCTAGGTTTGCGCCAAGTAGAAACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

310

Amino Acids

35.18

Weight (kDa)

5.75

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 83	2.4e-13	MATH domain
MATH_2	PF22486	155 - 242	1e-18	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
Acc36I	ACCTGC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	222
AccII	CGCG	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	871
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	4 cut(s)	176, 304, 461, 558
AfiI	CCNNNNNNNGG	2 cut(s)	752, 753
AgsI	TTSAA	7 cut(s)	143, 254, 316, 329, 482, 529, 536
AjnI	CCWGG	2 cut(s)	505, 873
AloI	GAACNNNNNNTCC	2 cut(s)	773, 805
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
AoxI	GGCC	4 cut(s)	448, 508, 538, 871
ApoI	RAATTY	1 cut(s)	332
AspLEI	GCGC	3 cut(s)	231, 854, 915
AspS9I	GGNCC	2 cut(s)	449, 710
AvaII	GGWCC	1 cut(s)	710
BalI	TGGCCA	1 cut(s)	873
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	387
BccI	CCATC	2 cut(s)	113, 708
BceAI	ACGGC	1 cut(s)	43
BciT130I	CCWGG	2 cut(s)	507, 875
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	285
BfaI	CTAG	1 cut(s)	905
BfuAI	ACCTGC	1 cut(s)	787
BfuI	GTATCC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	558
Bme1390I	CCNGG	2 cut(s)	507, 875
Bme18I	GGWCC	1 cut(s)	710
BmgT120I	GGNCC	2 cut(s)	449, 710
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	2 cut(s)	507, 875
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	387
BsaBI	GATNNNNATC	2 cut(s)	127, 594
BsaJI	CCNNGG	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	2 cut(s)	752, 753
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	2 cut(s)	64, 847
Bse8I	GATNNNNATC	2 cut(s)	127, 594
BseBI	CCWGG	2 cut(s)	507, 875
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	2 cut(s)	127, 594
BseLI	CCNNNNNNNGG	2 cut(s)	752, 753
BseMI	GCAATG	2 cut(s)	64, 847
BseMII	CTCAG	4 cut(s)	30, 378, 734, 762
BseNI	ACTGG	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	4 cut(s)	450, 510, 540, 873
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	2 cut(s)	752, 753
BsnI	GGCC	4 cut(s)	450, 510, 540, 873
Bsp1407I	TGTACA	1 cut(s)	459
Bsp143I	GATC	2 cut(s)	38, 285
Bsp68I	TCGCGA	1 cut(s)	579
BspANI	GGCC	4 cut(s)	450, 510, 540, 873
BspCNI	CTCAG	4 cut(s)	29, 379, 733, 761
BspFNI	CGCG	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	895
BspLI	GGNNCC	1 cut(s)	801
BspMI	ACCTGC	1 cut(s)	787
BsrDI	GCAATG	2 cut(s)	64, 847
BsrGI	TGTACA	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	2 cut(s)	38, 285
Bst2UI	CCWGG	2 cut(s)	507, 875
Bst4CI	ACNGT	2 cut(s)	643, 692
BstAUI	TGTACA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	423, 697
BstDEI	CTNAG	5 cut(s)	16, 74, 387, 720, 748
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	1 cut(s)	346
BstFNI	CGCG	1 cut(s)	579
BstHHI	GCGC	3 cut(s)	231, 854, 915
BstKTI	GATC	2 cut(s)	41, 288
BstMBI	GATC	2 cut(s)	38, 285
BstNI	CCWGG	2 cut(s)	507, 875
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	505, 873
BstUI	CGCG	1 cut(s)	579
BstV2I	GAAGAC	1 cut(s)	213
BstXI	CCANNNNNNTGG	2 cut(s)	707, 777
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	450, 510, 540, 873
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	346
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 728
BtuMI	TCGCGA	1 cut(s)	579
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	2 cut(s)	423, 697
CciI	TCATGA	1 cut(s)	895
CfoI	GCGC	3 cut(s)	231, 854, 915
Cfr13I	GGNCC	2 cut(s)	449, 710
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	4 cut(s)	175, 303, 460, 557
CviAII	CATG	5 cut(s)	110, 467, 793, 827, 896
CviQI	GTAC	4 cut(s)	175, 303, 460, 557
DdeI	CTNAG	5 cut(s)	16, 74, 387, 720, 748
DpnI	GATC	2 cut(s)	40, 287
DpnII	GATC	2 cut(s)	38, 285
EaeI	YGGCCR	1 cut(s)	871
Eco32I	GATATC	1 cut(s)	356
Eco47I	GGWCC	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	505, 873
EcoRV	GATATC	1 cut(s)	356
FaeI	CATG	5 cut(s)	113, 470, 796, 830, 899
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	5 cut(s)	109, 466, 792, 826, 895
FauNDI	CATATG	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	285
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	1 cut(s)	353
FspBI	CTAG	1 cut(s)	905
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	3 cut(s)	230, 853, 914
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	450, 510, 540, 873
HapII	CCGG	2 cut(s)	147, 237
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	3 cut(s)	231, 854, 915
Hin1II	CATG	5 cut(s)	113, 470, 796, 830, 899
Hin6I	GCGC	3 cut(s)	229, 852, 913
HinP1I	GCGC	3 cut(s)	229, 852, 913
HinfI	GANTC	7 cut(s)	50, 83, 114, 128, 245, 478, 590
HpaII	CCGG	2 cut(s)	147, 237
Hpy166II	GTNNAC	3 cut(s)	223, 713, 838
Hpy188I	TCNGA	6 cut(s)	19, 38, 49, 290, 520, 751
Hpy188III	TCNNGA	3 cut(s)	313, 578, 896
Hpy8I	GTNNAC	3 cut(s)	223, 713, 838
HpyAV	CCTTC	4 cut(s)	310, 530, 776, 851
HpyCH4III	ACNGT	2 cut(s)	643, 692
HpyCH4V	TGCA	4 cut(s)	69, 402, 659, 796
HpyF3I	CTNAG	5 cut(s)	16, 74, 387, 720, 748
Hsp92II	CATG	5 cut(s)	113, 470, 796, 830, 899
HspAI	GCGC	3 cut(s)	229, 852, 913
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	38, 285
LmnI	GCTCC	2 cut(s)	383, 508
LweI	GCATC	1 cut(s)	331
MaeI	CTAG	1 cut(s)	905
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	2 cut(s)	40, 287
MboI	GATC	2 cut(s)	38, 285
MboII	GAAGA	5 cut(s)	205, 208, 218, 254, 341
MfeI	CAATTG	1 cut(s)	775
MlsI	TGGCCA	1 cut(s)	873
MluCI	AATT	4 cut(s)	332, 484, 775, 809
MluNI	TGGCCA	1 cut(s)	873
MlyI	GAGTC	2 cut(s)	92, 123
MnlI	CCTC	8 cut(s)	143, 355, 382, 574, 745, 752, 757, 779
Mox20I	TGGCCA	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	873
MseI	TTAA	2 cut(s)	12, 497
Msp20I	TGGCCA	1 cut(s)	873
MspI	CCGG	2 cut(s)	147, 237
MspR9I	CCNGG	2 cut(s)	507, 875
MunI	CAATTG	1 cut(s)	775
MvaI	CCWGG	2 cut(s)	507, 875
MvnI	CGCG	1 cut(s)	579
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	2 cut(s)	38, 285
NlaIII	CATG	5 cut(s)	113, 470, 796, 830, 899
NlaIV	GGNNCC	1 cut(s)	801
NmuCI	GTSAC	1 cut(s)	643
NruI	TCGCGA	1 cut(s)	579
NsbI	TGCGCA	1 cut(s)	230
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	50, 128, 245, 478, 590
PflFI	GACNNNGTC	1 cut(s)	765
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
Psp6I	CCWGG	2 cut(s)	505, 873
PspGI	CCWGG	2 cut(s)	505, 873
PspN4I	GGNNCC	1 cut(s)	801
PspPI	GGNCC	2 cut(s)	449, 710
PsyI	GACNNNGTC	1 cut(s)	765
RruI	TCGCGA	1 cut(s)	579
RsaI	GTAC	4 cut(s)	176, 304, 461, 558
RsaNI	GTAC	4 cut(s)	175, 303, 460, 557
SaqAI	TTAA	2 cut(s)	12, 497
Sau3AI	GATC	2 cut(s)	38, 285
Sau96I	GGNCC	2 cut(s)	449, 710
ScaI	AGTACT	1 cut(s)	558
SchI	GAGTC	2 cut(s)	92, 123
ScrFI	CCNGG	2 cut(s)	507, 875
SetI	ASST	7 cut(s)	321, 388, 393, 801, 843, 879, 910
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	710
Sse9I	AATT	4 cut(s)	332, 484, 775, 809
SspMI	CTAG	1 cut(s)	905
StyD4I	CCNGG	2 cut(s)	505, 873
TaaI	ACNGT	2 cut(s)	643, 692
TaqI	TCGA	1 cut(s)	117
TasI	AATT	4 cut(s)	332, 484, 775, 809
TatI	WGTACW	3 cut(s)	302, 459, 556
TfiI	GAWTC	5 cut(s)	50, 128, 245, 478, 590
Tru1I	TTAA	2 cut(s)	12, 497
Tru9I	TTAA	2 cut(s)	12, 497
TscAI	CASTG	2 cut(s)	60, 728
TseFI	GTSAC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	2 cut(s)	141, 781
TspRI	CASTG	2 cut(s)	60, 728
Tth111I	GACNNNGTC	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	710
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	1 cut(s)	905
ZrmI	AGTACT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.