Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

11158869 .. 11164699

Gene Structure 5831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1100800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCAAAAGGAATTGATAGAGTTGGAGATATTCCAGAGAATATTAAAAGATACGAAAGATCCTTTCCGCCAGATCACTTTACGATGGAAATAAAGCCTTACTCCTTACTATCAAACCCGCAAGCAAAAATATATGAGTCAAGTGTCTTTGAAGCTGGTGGATACAAATGGAGGTTGTCACTTTACCCAAATGAAACAATAGATGGGAAGGGCTATATTTCCCTCTACTTGGCATTAGCATCTACAAATCCTTCTACTTCATTGACGTTAAGAAGTATTTTTCCTGGATCTAGGAAGCCGGTCGACGTATATGCCACTTTTAGACTGTTTGTATTTAATAATAAAAGTGTGGAGGACAAATACTTGACCGTCGAAGATGGTTCTGGAAAAGTAAGGCCATTTAACGAGTGGAGGACTCAGGAGTGGGGTTTTGCAAAATTTCTTCCTCGTTCAACATTCGAATCTCAGGGATACCTTTTCAATGATTGCTGCACTTTTGGGGCCGAGGTTTTTGTTCATAAAAACAACAGGAAAATCTCTAAAGAACCATTTATCCTTTGGAAACCTACAAATCCCATGCGTGCCGCCCAATTTAGACTGGAGAGCTTCCAATCAAAACATGACCCGGAGTATTTATCTCCAGAATTCACTCTTCAAGGAAGAAAATGGAAGTTAAGGGTGTGTCCGAGAGGAGAAGGGAAGAAACAGAAGGACAAATCACTATCACTTTTCTTACGATCAACCGAAGATTTGAAGACTCTTCCGAGTATTTGTGCAGAATTCAAGCTTAGGGTATTGGATCAAGTCCGCCATGACAATATTGAAAAAACAGTTAGTCATTGGTTCAGTTCATCAAACTGCGAACATGGTTGTCAAAGCTTCATGCCACTTAAAACTCTTCAGGACTCATCGAAAGGATTCATTCAGGATGATGCATTATCTGTTGAAGTTGAAATCCTTGCTATATCTGTGGCTAAAGCTCCTGCAACAACAAACAAAACGCCTATACTAGTGATCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

341

Amino Acids

38.96

Weight (kDa)

9.18

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	26 - 170	1.4e-26	MATH domain
MATH_2	PF22486	199 - 319	2.6e-25	MATH domain
MATH	PF00917	208 - 319	1.5e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	4 cut(s)	68, 119, 585, 808
AclWI	GGATC	3 cut(s)	54, 295, 807
AcsI	RAATTY	3 cut(s)	437, 644, 779
AcuI	CTGAAG	1 cut(s)	884
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	9 cut(s)	152, 453, 481, 656, 754, 784, 824, 947, 953
AhlI	ACTAGT	1 cut(s)	1009
AjnI	CCWGG	1 cut(s)	283
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	5 cut(s)	155, 606, 787, 879, 980
AluI	AGCT	5 cut(s)	155, 606, 787, 879, 980
AlwI	GGATC	3 cut(s)	54, 295, 807
AoxI	GGCC	2 cut(s)	395, 501
ApeKI	GCWGC	1 cut(s)	489
ApoI	RAATTY	3 cut(s)	437, 644, 779
Asp700I	GAANNNNTTC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	626
AsuII	TTCGAA	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	3 cut(s)	79, 197, 371
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	2 cut(s)	155, 464
BclI	TGATCA	1 cut(s)	1014
BcnI	CCSGG	1 cut(s)	626
BcuI	ACTAGT	1 cut(s)	1009
BfaI	CTAG	2 cut(s)	291, 1010
BfuI	GTATCC	2 cut(s)	155, 464
BisI	GCNGC	2 cut(s)	490, 585
BlsI	GCNGC	2 cut(s)	491, 586
Bme1390I	CCNGG	2 cut(s)	285, 626
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	502
BmrFI	CCNGG	2 cut(s)	285, 626
BmsI	GCATC	2 cut(s)	248, 922
BpiI	GAAGAC	1 cut(s)	761
BpmI	CTGGAG	2 cut(s)	620, 624
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	626
BsaJI	CCNNGG	1 cut(s)	504
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	298
Bse1I	ACTGG	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	934
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	2 cut(s)	431, 479
BseNI	ACTGG	1 cut(s)	603
BseRI	GAGGAG	1 cut(s)	705
BseXI	GCAGC	1 cut(s)	476
BsgI	GTGCAG	2 cut(s)	475, 795
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	2 cut(s)	397, 503
BsiEI	CGRYCG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	299, 626
BslI	CCNNNNNNNGG	1 cut(s)	229
BsnI	GGCC	2 cut(s)	397, 503
Bsp119I	TTCGAA	1 cut(s)	459
Bsp143I	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
BspACI	CCGC	4 cut(s)	68, 119, 585, 808
BspANI	GGCC	2 cut(s)	397, 503
BspCNI	CTCAG	2 cut(s)	430, 478
BspLI	GGNNCC	1 cut(s)	502
BspPI	GGATC	3 cut(s)	54, 295, 807
BspT104I	TTCGAA	1 cut(s)	459
BsrFI	RCCGGY	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	327, 370, 832
Bst6I	CTCTTC	3 cut(s)	657, 765, 903
BstBI	TTCGAA	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	123, 582
BstDEI	CTNAG	3 cut(s)	417, 465, 788
BstF5I	GGATG	1 cut(s)	934
BstKTI	GATC	6 cut(s)	62, 76, 290, 740, 802, 1017
BstMBI	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
BstMCI	CGRYCG	1 cut(s)	303
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	283, 624
BstV1I	GCAGC	1 cut(s)	476
BstV2I	GAAGAC	1 cut(s)	761
BstX2I	RGATCY	2 cut(s)	59, 287
BstYI	RGATCY	2 cut(s)	59, 287
BsuI	GTATCC	2 cut(s)	155, 464
BsuRI	GGCC	2 cut(s)	397, 503
BtsCI	GGATG	1 cut(s)	934
Cac8I	GCNNGC	2 cut(s)	123, 582
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	1 cut(s)	501
CviAII	CATG	5 cut(s)	577, 620, 812, 866, 883
DdeI	CTNAG	3 cut(s)	417, 465, 788
DpnI	GATC	6 cut(s)	61, 75, 289, 739, 801, 1016
DpnII	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
Eam1104I	CTCTTC	3 cut(s)	657, 765, 903
EarI	CTCTTC	3 cut(s)	657, 765, 903
EciI	GGCGGA	2 cut(s)	57, 797
Eco57I	CTGAAG	1 cut(s)	884
EcoRI	GAATTC	2 cut(s)	644, 779
EcoRII	CCWGG	1 cut(s)	283
EcoT22I	ATGCAT	1 cut(s)	937
FaeI	CATG	5 cut(s)	580, 623, 815, 869, 886
FatI	CATG	5 cut(s)	576, 619, 811, 865, 882
FauI	CCCGC	1 cut(s)	126
FbaI	TGATCA	1 cut(s)	1014
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	490, 585
FokI	GGATG	1 cut(s)	941
Fsp4HI	GCNGC	2 cut(s)	490, 585
FspBI	CTAG	2 cut(s)	291, 1010
GluI	GCNGC	2 cut(s)	490, 585
GsuI	CTGGAG	2 cut(s)	620, 624
HaeIII	GGCC	2 cut(s)	397, 503
HapII	CCGG	2 cut(s)	299, 626
Hin1II	CATG	5 cut(s)	580, 623, 815, 869, 886
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	785, 877
HinfI	GANTC	6 cut(s)	137, 415, 461, 757, 905, 918
HpaII	CCGG	2 cut(s)	299, 626
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	2 cut(s)	687, 765
Hpy188III	TCNNGA	6 cut(s)	35, 384, 419, 641, 902, 926
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	2 cut(s)	308, 374
HpyAV	CCTTC	4 cut(s)	202, 261, 689, 703
HpyCH4III	ACNGT	3 cut(s)	327, 370, 832
HpyCH4IV	ACGT	2 cut(s)	266, 306
HpyCH4V	TGCA	5 cut(s)	434, 492, 776, 935, 986
HpyF3I	CTNAG	3 cut(s)	417, 465, 788
HpySE526I	ACGT	2 cut(s)	266, 306
Hsp92II	CATG	5 cut(s)	580, 623, 815, 869, 886
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
LmnI	GCTCC	1 cut(s)	985
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	2 cut(s)	248, 922
MaeI	CTAG	2 cut(s)	291, 1010
MaeII	ACGT	2 cut(s)	266, 306
MaeIII	GTNAC	1 cut(s)	177
MalI	GATC	6 cut(s)	61, 75, 289, 739, 801, 1016
MboI	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
MboII	GAAGA	9 cut(s)	386, 434, 644, 672, 712, 752, 758, 766, 890
MflI	RGATCY	2 cut(s)	59, 287
MluCI	AATT	5 cut(s)	12, 437, 590, 644, 779
MlyI	GAGTC	4 cut(s)	146, 409, 751, 899
MmeI	TCCRAC	1 cut(s)	4
MnlI	CCTC	7 cut(s)	165, 233, 346, 405, 456, 499, 683
Mph1103I	ATGCAT	1 cut(s)	937
MroXI	GAANNNNTTC	1 cut(s)	917
MseI	TTAA	6 cut(s)	45, 269, 336, 402, 674, 891
MspI	CCGG	2 cut(s)	299, 626
MspR9I	CCNGG	2 cut(s)	285, 626
MvaI	CCWGG	1 cut(s)	285
NciI	CCSGG	1 cut(s)	626
NdeII	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
NlaIII	CATG	5 cut(s)	580, 623, 815, 869, 886
NlaIV	GGNNCC	1 cut(s)	502
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	177
NsiI	ATGCAT	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	459
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	2 cut(s)	461, 918
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	491, 586
PleI	GAGTC	4 cut(s)	145, 409, 751, 899
PpsI	GAGTC	4 cut(s)	145, 409, 751, 899
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	502
PspPI	GGNCC	1 cut(s)	501
PsuI	RGATCY	2 cut(s)	59, 287
SalI	GTCGAC	1 cut(s)	302
SaqAI	TTAA	6 cut(s)	45, 269, 336, 402, 674, 891
SatI	GCNGC	2 cut(s)	490, 585
Sau3AI	GATC	6 cut(s)	59, 73, 287, 737, 799, 1014
Sau96I	GGNCC	1 cut(s)	501
SchI	GAGTC	4 cut(s)	146, 409, 751, 899
ScrFI	CCNGG	2 cut(s)	285, 626
SfaNI	GCATC	2 cut(s)	248, 922
SfuI	TTCGAA	1 cut(s)	459
SpeI	ACTAGT	1 cut(s)	1009
Sse9I	AATT	5 cut(s)	12, 437, 590, 644, 779
SsiI	CCGC	4 cut(s)	68, 119, 585, 808
SspI	AATATT	2 cut(s)	43, 820
SspMI	CTAG	2 cut(s)	291, 1010
StyD4I	CCNGG	2 cut(s)	283, 624
TaaI	ACNGT	3 cut(s)	327, 370, 832
TaiI	ACGT	2 cut(s)	269, 309
TaqI	TCGA	4 cut(s)	303, 372, 459, 911
TasI	AATT	5 cut(s)	12, 437, 590, 644, 779
TauI	GCSGC	1 cut(s)	587
TfiI	GAWTC	2 cut(s)	461, 918
Tru1I	TTAA	6 cut(s)	45, 269, 336, 402, 674, 891
Tru9I	TTAA	6 cut(s)	45, 269, 336, 402, 674, 891
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	1 cut(s)	489
Tsp45I	GTSAC	1 cut(s)	177
TspDTI	ATGAA	6 cut(s)	207, 249, 506, 840, 871, 910
XapI	RAATTY	3 cut(s)	437, 644, 779
XcmI	CCANNNNNNNNNTGG	2 cut(s)	405, 555
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	917
XspI	CTAG	2 cut(s)	291, 1010
Zsp2I	ATGCAT	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.