Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

52359575 .. 52360066

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGTTACTTGCAGGTGTTTTGAGATCGATTACGGATGCACCACCAACTCATTACACACTAAAAATAGAGTCACTTTCGGTGCTGAACAAAAATTCATTGGAGAAATATGAATCAGGGGAATTCGGAGCAGGAGGATACAAATGGAAACTTGTTTTCTATCCAAATGGAAACAAGAGAAAGAATGTTAAAGACCACATTTCCCTCTACCTGGTAATGGCTGGAGCAAATACTTCCCAGATACATTGGGGTGTACATGCTGTTTTCAGACTGTTTTTGCTGGATCAGAATACCGGCAACTACTTAGTTTTTCAGGGTATGATGTCTTTCATTTCACTCTTATATATCCCAGCAGGGGATGTGCAAATCAGCAGTTCTCATTTTCTGATGGTCATGTGCATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

9.04

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	17 - 100	2.4e-23	MATH domain
TRAF-mep_MATH	PF21355	44 - 98	6.2e-07	TRAF/meprin, MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2
Acc36I	ACCTGC	1 cut(s)	2
AclWI	GGATC	1 cut(s)	288
AcsI	RAATTY	2 cut(s)	91, 119
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	3 cut(s)	208, 214, 352
AjnI	CCWGG	1 cut(s)	207
AlwI	GGATC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	91, 119
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	128
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	1 cut(s)	25
BpmI	CTGGAG	1 cut(s)	240
Bsa29I	ATCGAT	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 214, 352
Bse118I	RCCGGY	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	26
BseGI	GGATG	2 cut(s)	40, 361
BseLI	CCNNNNNNNGG	3 cut(s)	208, 214, 352
BseMI	GCAATG	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	208, 214, 352
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	23, 280
BspDI	ATCGAT	1 cut(s)	26
BspMI	ACCTGC	1 cut(s)	2
BspPI	GGATC	1 cut(s)	288
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	290
BssMI	GATC	2 cut(s)	23, 280
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	1 cut(s)	270
BstAUI	TGTACA	1 cut(s)	250
BstDEI	CTNAG	2 cut(s)	301, 402
BstF5I	GGATG	2 cut(s)	40, 361
BstKTI	GATC	2 cut(s)	26, 283
BstMBI	GATC	2 cut(s)	23, 280
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	26
BsuI	GTATCC	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	40, 361
BveI	ACCTGC	1 cut(s)	2
Cfr10I	RCCGGY	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	26
CsiI	ACCWGGT	1 cut(s)	207
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	2 cut(s)	254, 391
CviJI	RGCY	1 cut(s)	218
CviKI_1	RGCY	1 cut(s)	218
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	301, 402
DpnI	GATC	2 cut(s)	25, 282
DpnII	GATC	2 cut(s)	23, 280
EcoRI	GAATTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	257, 394
FaiI	YATR	6 cut(s)	108, 255, 317, 340, 342, 392
FatI	CATG	2 cut(s)	253, 390
FokI	GGATG	2 cut(s)	47, 368
GsaI	CCCAGC	1 cut(s)	350
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	2 cut(s)	257, 394
HinfI	GANTC	2 cut(s)	68, 110
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	4 cut(s)	125, 266, 285, 384
Hpy8I	GTNNAC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4V	TGCA	4 cut(s)	11, 38, 361, 396
HpyF3I	CTNAG	2 cut(s)	301, 402
Hsp92II	CATG	2 cut(s)	257, 394
Kzo9I	GATC	2 cut(s)	23, 280
LmnI	GCTCC	2 cut(s)	125, 221
LweI	GCATC	1 cut(s)	25
MabI	ACCWGGT	1 cut(s)	207
MaeIII	GTNAC	2 cut(s)	3, 69
MalI	GATC	2 cut(s)	25, 282
MboI	GATC	2 cut(s)	23, 280
MluCI	AATT	2 cut(s)	91, 119
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	125, 212
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
NdeII	GATC	2 cut(s)	23, 280
NlaIII	CATG	2 cut(s)	257, 394
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	257
PaqCI	CACCTGC	1 cut(s)	2
PfeI	GAWTC	1 cut(s)	110
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	207
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	186
Sau3AI	GATC	2 cut(s)	23, 280
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	2 cut(s)	16, 210
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	2 cut(s)	91, 119
StyD4I	CCNGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	270
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	91, 119
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	69
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	84, 123, 316
TspGWI	ACGGA	1 cut(s)	47
XapI	RAATTY	2 cut(s)	91, 119
XceI	RCATGY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.