Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

37328510 .. 37330977

Gene Structure 2468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAAATCGCTGACGTCTTTAATAACAGAGCCCATCTCTTTAGGGGTTACAAGATCCAAAAGAGACCTTCCACCGGCTCATTTTTCTTTGAAAATACAAACCTACTCCTTACTACCAAAGACAGAAGTTGAAAAGTATGATTCTGGTGTTTTTCAAGCTGAAGGCCACAAATGGAGGTTGTCTCTTCACCCAAACGAAACAGAAGAAGGGATTGGCTACATCTCCCTCTACTTGGCAATAGCGGAAACAGATACTTATCCTGAAGGGTGGGAGGTTTATGCCGACTACAAATTGTTTGTGCTTGATCATTTGCAGAAGAAGTACTTAACTGTCCAAGATGCTGATGGAGATATGAAAAGGTTTCATAAGGAAAAGACTGAGTGGGGATTTGCAAAGTTACTTACCCTTGAAGCTTTCAAAAATTGTTCTAATGGATATCTTGTTGATGACTGCTGCGAGTTTGGGGCAGAGGTTTTTGTTTATAGTCGCAATAACGAATGGGAATCTCTTGCCATGGTTAAGGAACCTAGTGATGGTACTTTCCGTTATGAGATGGAAAATTTCTCAGCAAAAGCTCAGCCTTCTTATTACTCGAAAGTGTTCACAGTTGGTGAGCGAAATTGGAAATTAAAGGTTTGGCCGAAAGGGAACGGTGCTCAGAGGGGCAAAGCACTATCTATATTCGTAATTTTGGATGACTGGAAGAGCCTTCCACCTAAGAGAGCATTATATGCAAAATACAAGCTCCGGATATTAGATCAAGTTAGTGGTAAACATGAACAAACCACAGGTTCTCACTGGTTCTCTTCCTCAAGCAGCGAATGGGGTTTTCCAATCTTTCTGACGTTGGATAAACTCCATCAAGACTCGAATGGGTTCATTAAGGATGATAAATTGATTGCTGAAATTGAATTCCTCACCATCTCTGTGATTAAGGTTTACTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

315

Amino Acids

36.24

Weight (kDa)

6.27

Isoelectric Point (pI)

27.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	27 - 158	2e-31	MATH domain
MATH	PF00917	44 - 160	1.6e-11	MATH domain
MATH_2	PF22486	181 - 304	3.2e-28	MATH domain
MATH	PF00917	187 - 304	2.3e-09	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	17
AccIII	TCCGGA	1 cut(s)	747
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	559, 911
AcuI	CTGAAG	2 cut(s)	180, 282
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	323, 538
AfiI	CCNNNNNNNGG	3 cut(s)	73, 232, 533
AgsI	TTSAA	6 cut(s)	91, 131, 155, 410, 418, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	195, 227
AluBI	AGCT	4 cut(s)	158, 413, 575, 745
AluI	AGCT	4 cut(s)	158, 413, 575, 745
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	2 cut(s)	57, 186
AlwI	GGATC	1 cut(s)	48
Aor13HI	TCCGGA	1 cut(s)	747
AoxI	GGCC	2 cut(s)	163, 638
ApeKI	GCWGC	2 cut(s)	453, 816
ApoI	RAATTY	2 cut(s)	559, 911
Asp700I	GAANNNNTTC	2 cut(s)	599, 875
AsuHPI	GGTGA	3 cut(s)	179, 623, 910
BanII	GRGCYC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	2 cut(s)	440, 828
BccI	CCATC	6 cut(s)	41, 338, 527, 547, 867, 929
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	57, 186
BfaI	CTAG	1 cut(s)	528
BisI	GCNGC	2 cut(s)	454, 817
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	2 cut(s)	455, 818
BmcAI	AGTACT	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	525
BmsI	GCATC	1 cut(s)	328
BplI	GAGNNNNNCTC	4 cut(s)	20, 52, 166, 198
Bpu1102I	GCTNAGC	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	796
BsaBI	GATNNNNATC	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	513
BsaWI	WCCGGW	1 cut(s)	747
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 232, 533
Bse118I	RCCGGY	1 cut(s)	73
Bse1I	ACTGG	2 cut(s)	704, 803
Bse8I	GATNNNNATC	1 cut(s)	255
BseAI	TCCGGA	1 cut(s)	747
BseDI	CCNNGG	1 cut(s)	513
BseGI	GGATG	2 cut(s)	700, 892
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	3 cut(s)	73, 232, 533
BseMII	CTCAG	4 cut(s)	369, 579, 590, 671
BseNI	ACTGG	2 cut(s)	704, 803
BseXI	GCAGC	2 cut(s)	440, 828
BshFI	GGCC	2 cut(s)	165, 640
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	74, 748
BslI	CCNNNNNNNGG	3 cut(s)	73, 232, 533
BsmAI	GTCTC	2 cut(s)	57, 186
BsnI	GGCC	2 cut(s)	165, 640
Bso31I	GGTCTC	1 cut(s)	57
Bsp1286I	GDGCHC	2 cut(s)	33, 658
Bsp13I	TCCGGA	1 cut(s)	747
Bsp143I	GATC	3 cut(s)	53, 304, 757
Bsp1720I	GCTNAGC	1 cut(s)	576
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	165, 640
BspCNI	CTCAG	4 cut(s)	370, 578, 589, 670
BspEI	TCCGGA	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	944
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	57
BsrFI	RCCGGY	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	704, 803
BssAI	RCCGGY	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	513
BssMI	GATC	3 cut(s)	53, 304, 757
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	331, 607, 653
Bst6I	CTCTTC	3 cut(s)	189, 698, 811
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	731
BstDEI	CTNAG	5 cut(s)	378, 565, 576, 657, 717
BstDSI	CCRYGG	1 cut(s)	513
BstF5I	GGATG	2 cut(s)	700, 892
BstKTI	GATC	3 cut(s)	56, 307, 760
BstMAI	GTCTC	2 cut(s)	57, 186
BstMBI	GATC	3 cut(s)	53, 304, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	731
BstV1I	GCAGC	2 cut(s)	440, 828
BstX2I	RGATCY	1 cut(s)	53
BstYI	RGATCY	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	165, 640
BtgI	CCRYGG	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	700, 892
BtsIMutI	CAGTG	1 cut(s)	796
CciI	TCATGA	1 cut(s)	944
Cfr10I	RCCGGY	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	322, 537
CviAII	CATG	3 cut(s)	514, 776, 945
CviQI	GTAC	2 cut(s)	322, 537
DdeI	CTNAG	5 cut(s)	378, 565, 576, 657, 717
DpnI	GATC	3 cut(s)	55, 306, 759
DpnII	GATC	3 cut(s)	53, 304, 757
EaeI	YGGCCR	1 cut(s)	638
Eam1104I	CTCTTC	3 cut(s)	189, 698, 811
EarI	CTCTTC	3 cut(s)	189, 698, 811
Eco130I	CCWWGG	1 cut(s)	513
Eco24I	GRGCYC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	180, 282
EcoRI	GAATTC	1 cut(s)	911
EcoRV	GATATC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	3 cut(s)	517, 779, 948
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FatI	CATG	3 cut(s)	513, 775, 944
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	2 cut(s)	454, 817
FokI	GGATG	2 cut(s)	707, 899
FriOI	GRGCYC	1 cut(s)	33
Fsp4HI	GCNGC	2 cut(s)	454, 817
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	2 cut(s)	454, 817
HaeIII	GGCC	2 cut(s)	165, 640
HapII	CCGG	2 cut(s)	74, 748
Hin1I	GRCGYC	1 cut(s)	14
Hin1II	CATG	3 cut(s)	517, 779, 948
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	3 cut(s)	140, 503, 866
HpaII	CCGG	2 cut(s)	74, 748
HphI	GGTGA	3 cut(s)	179, 623, 910
Hpy166II	GTNNAC	3 cut(s)	603, 773, 940
Hpy188I	TCNGA	2 cut(s)	660, 843
Hpy188III	TCNNGA	4 cut(s)	260, 748, 863, 945
Hpy8I	GTNNAC	3 cut(s)	603, 773, 940
HpyAV	CCTTC	6 cut(s)	77, 155, 200, 257, 591, 719
HpyCH4III	ACNGT	3 cut(s)	331, 607, 653
HpyCH4IV	ACGT	2 cut(s)	14, 845
HpyCH4V	TGCA	3 cut(s)	313, 392, 734
HpyF10VI	GCNNNNNNNGC	1 cut(s)	731
HpyF3I	CTNAG	5 cut(s)	378, 565, 576, 657, 717
HpySE526I	ACGT	2 cut(s)	14, 845
Hsp92I	GRCGYC	1 cut(s)	14
Hsp92II	CATG	3 cut(s)	517, 779, 948
Kpn2I	TCCGGA	1 cut(s)	747
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	53, 304, 757
LguI	GCTCTTC	1 cut(s)	698
LmnI	GCTCC	1 cut(s)	750
LpnPI	CCDG	7 cut(s)	87, 129, 273, 685, 761, 774, 784
Lsp1109I	GCAGC	2 cut(s)	440, 828
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	2 cut(s)	14, 845
MaeIII	GTNAC	2 cut(s)	46, 396
MalI	GATC	3 cut(s)	55, 306, 759
MboI	GATC	3 cut(s)	53, 304, 757
MboII	GAAGA	5 cut(s)	176, 215, 328, 715, 798
MflI	RGATCY	1 cut(s)	53
MhlI	GDGCHC	2 cut(s)	33, 658
MluCI	AATT	9 cut(s)	290, 421, 559, 619, 626, 687, 893, 906, 911
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	1 cut(s)	828
MnlI	CCTC	7 cut(s)	168, 236, 265, 463, 654, 820, 926
MroI	TCCGGA	1 cut(s)	747
MroXI	GAANNNNTTC	2 cut(s)	599, 875
MseI	TTAA	6 cut(s)	20, 326, 519, 629, 882, 933
MslI	CAYNNNNRTG	1 cut(s)	926
MspI	CCGG	2 cut(s)	74, 748
MwoI	GCNNNNNNNGC	1 cut(s)	731
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	3 cut(s)	53, 304, 757
NlaIII	CATG	3 cut(s)	517, 779, 948
NlaIV	GGNNCC	1 cut(s)	525
PagI	TCATGA	1 cut(s)	944
PciSI	GCTCTTC	1 cut(s)	698
PdmI	GAANNNNTTC	2 cut(s)	599, 875
PfeI	GAWTC	2 cut(s)	140, 503
PkrI	GCNGC	2 cut(s)	455, 818
PleI	GAGTC	1 cut(s)	860
PpsI	GAGTC	1 cut(s)	860
PspN4I	GGNNCC	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	53
RsaI	GTAC	2 cut(s)	323, 538
RsaNI	GTAC	2 cut(s)	322, 537
RseI	CAYNNNNRTG	1 cut(s)	926
SapI	GCTCTTC	1 cut(s)	698
SaqAI	TTAA	6 cut(s)	20, 326, 519, 629, 882, 933
SatI	GCNGC	2 cut(s)	454, 817
Sau3AI	GATC	3 cut(s)	53, 304, 757
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	1 cut(s)	860
SduI	GDGCHC	2 cut(s)	33, 658
SfaNI	GCATC	1 cut(s)	328
SmiMI	CAYNNNNRTG	1 cut(s)	926
SmlI	CTYRAG	1 cut(s)	811
SmoI	CTYRAG	1 cut(s)	811
Sse9I	AATT	9 cut(s)	290, 421, 559, 619, 626, 687, 893, 906, 911
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	528
StyI	CCWWGG	1 cut(s)	513
TaaI	ACNGT	3 cut(s)	331, 607, 653
TaiI	ACGT	2 cut(s)	17, 848
TaqI	TCGA	2 cut(s)	593, 869
TasI	AATT	9 cut(s)	290, 421, 559, 619, 626, 687, 893, 906, 911
TatI	WGTACW	1 cut(s)	321
TfiI	GAWTC	2 cut(s)	140, 503
Tru1I	TTAA	6 cut(s)	20, 326, 519, 629, 882, 933
Tru9I	TTAA	6 cut(s)	20, 326, 519, 629, 882, 933
TscAI	CASTG	1 cut(s)	803
TseI	GCWGC	2 cut(s)	453, 816
TspDTI	ATGAA	5 cut(s)	17, 353, 368, 792, 868
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	1 cut(s)	803
XapI	RAATTY	2 cut(s)	559, 911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	599, 875
XspI	CTAG	1 cut(s)	528
ZraI	GACGTC	1 cut(s)	15
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.