Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

29748348 .. 29748993

Gene Structure 646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATATCTTGTTGATGACTTGTTGCAAGTTTGGGGCAGAGGTTTTTGTTTATAGTCGTAATAAAGAATGGGAATCTCTTGCCATGGTTAAGGAACCTAGTGATGGTACTTTCCGTTATGAGATGGAAAATTTCTCGGCAAAAGCACGACCTTCTTATTGCTCGAAAGTGTTCACAGCTGGTGAGCGAAATTGGTATGCACTTCTTCCATCTTTTCCACTTCTCTCTGCTGGCATGCTTCTGCGCTTGCACGTAACTTTCATAAGAATATTTACTTATAACCGAAAGCGGAAGAAGTGGAAAAATGTTTTCACTTCTTCTCTTAAACCTAATCTAAGAGTCAATTGGTTGAAGGAACACAAACAGTGGTGGCCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

126

Amino Acids

15.1

Weight (kDa)

9.97

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AciI	CCGC	1 cut(s)	289
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
AoxI	GGCC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	194
BccI	CCATC	3 cut(s)	98, 118, 217
BfaI	CTAG	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	253
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	104
BsnI	GGCC	1 cut(s)	373
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	373
BspLI	GGNNCC	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	232, 236, 248
BstDEI	CTNAG	1 cut(s)	335
BstDSI	CCRYGG	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	84
BtsIMutI	CAGTG	1 cut(s)	371
Cac8I	GCNNGC	3 cut(s)	232, 236, 248
CfoI	GCGC	1 cut(s)	246
Csp6I	GTAC	1 cut(s)	108
CviAII	CATG	2 cut(s)	85, 235
CviJI	RGCY	2 cut(s)	179, 373
CviKI_1	RGCY	2 cut(s)	179, 373
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	7
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	88, 238
FaiI	YATR	7 cut(s)	54, 86, 120, 198, 236, 263, 279
FatI	CATG	2 cut(s)	84, 234
FspBI	CTAG	1 cut(s)	99
GlaI	GCGC	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	373
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	2 cut(s)	88, 238
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	74, 339
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	2 cut(s)	162, 346
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	3 cut(s)	27, 200, 250
HpyF3I	CTNAG	1 cut(s)	335
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	2 cut(s)	88, 238
HspAI	GCGC	1 cut(s)	244
LpnPI	CCDG	2 cut(s)	165, 216
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	253
MboII	GAAGA	3 cut(s)	197, 304, 309
MfeI	CAATTG	1 cut(s)	343
MluCI	AATT	3 cut(s)	130, 190, 343
MlyI	GAGTC	1 cut(s)	348
MnlI	CCTC	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	3 cut(s)	90, 324, 379
MspA1I	CMGCKG	1 cut(s)	179
MunI	CAATTG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	84
NlaIII	CATG	2 cut(s)	88, 238
NlaIV	GGNNCC	1 cut(s)	96
NmeAIII	GCCGAG	1 cut(s)	116
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	74
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
Ppu21I	YACGTR	1 cut(s)	253
PsiI	TTATAA	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	96
PvuII	CAGCTG	1 cut(s)	179
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
SaqAI	TTAA	3 cut(s)	90, 324, 379
SchI	GAGTC	1 cut(s)	348
SetI	ASST	6 cut(s)	45, 100, 154, 181, 255, 331
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	3 cut(s)	130, 190, 343
SsiI	CCGC	1 cut(s)	289
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	1 cut(s)	164
TasI	AATT	3 cut(s)	130, 190, 343
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	3 cut(s)	90, 324, 379
Tru9I	TTAA	3 cut(s)	90, 324, 379
TscAI	CASTG	1 cut(s)	371
TspDTI	ATGAA	1 cut(s)	250
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.