Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

8608068 .. 8612321

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATGACCAGTCTTAACTTCGATGCCCAAGATGGGATTTTGAGAAGCTTTTCGGATGCCCCACCGACTCATTACACAGTAAAAATACAGTCCCTTTCATTGCTGGCCAAAAACTCTTTGGAGAAATATGAATCGGGGGACTTTGAAGCTGGAGGGTACAAATGGAAACTGGTTTTCTATCCAAATGGAAACAAGGGCAGGAATGTGAAAGATCACATCTCTCTCTACTTGGTAATGTCTGGTGCAAATGCTACCCAGATTTCTCGGGAAGTGTATGCTGTTTTCAGGTTGTTTTTACTTGATCAGAATAAGGGCAACTACTTGGTTCTTCAAGAACAAAATGAAAGGCGCTTTCATGGGATGAAGCTCGATTGGGGATTTGATCAGTTCCTCTCTCAGAAATCTTTTACTGAAGCTTCCAATGGATTTCTCTTAGATGACACCAGTGTGTTTGGAGCAGAGATCTTTGTTCGTAAAGAGAGAAGTACATGCAAAGGAGAGTGTCTATCAATGGTAAAAGATGCCGTGATGTACAAGCATGTTTGGAAAATTGACAACTTCTCGAAGTTAGATGCGGAATTCTATGACTCAAAAACGTTCATTTCTGGAGACCAGAAATGGAAGATTCAACTCTATCCCAAGGGAAAAGGCAATGGAATTGGTACTCATCTTTCTCTTTATTTGGCATTGGCTGATCCGAAATCTCTTCCTCCAGGCTCTAAAATCTATGCAGATTTTACGCTACGGATCCTGGACCAAGTGAATGCAAGGCATCAGTTTGGTAAAGTCAACTTCTGGTTCAGCACCTCAAATCCAGAGTGCGGTTGGTGGAGATTCATAACGCTAGGATTTCTCAGCCAAGCAGGCATGGGGTTTTTGTCGAAGGATACTTGCATCGTGGAAGCAGAGGTCACTGTCCATGGAATTTCTAATGCCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

314

Amino Acids

35.5

Weight (kDa)

8.49

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	575, 822
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	3 cut(s)	689, 742, 755
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	578, 924
AcuI	CTGAAG	1 cut(s)	432
AfaI	GTAC	4 cut(s)	158, 487, 533, 664
AfiI	CCNNNNNNNGG	2 cut(s)	33, 821
AgsI	TTSAA	3 cut(s)	146, 332, 629
AjnI	CCWGG	2 cut(s)	712, 750
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	4 cut(s)	48, 149, 367, 416
AluI	AGCT	4 cut(s)	48, 149, 367, 416
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	3 cut(s)	689, 742, 755
Ama87I	CYCGRG	1 cut(s)	264
AoxI	GGCC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	578, 924
Asp700I	GAANNNNTTC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	754
AvaI	CYCGRG	1 cut(s)	264
AvaII	GGWCC	1 cut(s)	754
BalI	TGGCCA	1 cut(s)	107
BamHI	GGATCC	1 cut(s)	747
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	714, 752
BciVI	GTATCC	1 cut(s)	880
BclI	TGATCA	2 cut(s)	301, 382
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	845
BfmI	CTRYAG	1 cut(s)	938
BfoI	RGCGCY	1 cut(s)	352
BfuI	GTATCC	1 cut(s)	880
BglI	GCCNNNNNGGC	1 cut(s)	864
BglII	AGATCT	1 cut(s)	462
Bme1390I	CCNGG	2 cut(s)	714, 752
Bme18I	GGWCC	1 cut(s)	754
BmeT110I	CYCGRG	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	754
BmiI	GGNNCC	1 cut(s)	749
BmrFI	CCNGG	2 cut(s)	714, 752
BmsI	GCATC	6 cut(s)	13, 46, 511, 562, 781, 903
BpmI	CTGGAG	3 cut(s)	171, 627, 696
BsaI	GGTCTC	1 cut(s)	603
BsaJI	CCNNGG	2 cut(s)	639, 919
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 821
Bse1I	ACTGG	3 cut(s)	9, 174, 444
Bse3DI	GCAATG	2 cut(s)	98, 658
BseBI	CCWGG	2 cut(s)	714, 752
BseDI	CCNNGG	2 cut(s)	639, 919
BseGI	GGATG	2 cut(s)	61, 366
BseLI	CCNNNNNNNGG	2 cut(s)	33, 821
BseMI	GCAATG	2 cut(s)	98, 658
BseMII	CTCAG	2 cut(s)	410, 868
BseNI	ACTGG	3 cut(s)	9, 174, 444
BshFI	GGCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	264
BslFI	GGGAC	2 cut(s)	76, 152
BslI	CCNNNNNNNGG	2 cut(s)	33, 821
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	76, 152
BsmI	GAATGC	1 cut(s)	769
BsnI	GGCC	1 cut(s)	107
Bso31I	GGTCTC	1 cut(s)	603
BsoBI	CYCGRG	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
Bsp19I	CCATGG	1 cut(s)	919
BspACI	CCGC	2 cut(s)	575, 822
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	409, 867
BspLI	GGNNCC	1 cut(s)	749
BspPI	GGATC	3 cut(s)	689, 742, 755
BspTNI	GGTCTC	1 cut(s)	603
BsrDI	GCAATG	2 cut(s)	98, 658
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	9, 174, 444
BssECI	CCNNGG	2 cut(s)	639, 919
BssMI	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
BssT1I	CCWWGG	2 cut(s)	639, 919
Bst2UI	CCWGG	2 cut(s)	714, 752
Bst4CI	ACNGT	3 cut(s)	79, 90, 916
Bst6I	CTCTTC	1 cut(s)	711
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	2 cut(s)	105, 865
BstDEI	CTNAG	3 cut(s)	396, 433, 854
BstDSI	CCRYGG	1 cut(s)	919
BstF5I	GGATG	2 cut(s)	61, 366
BstH2I	RGCGCY	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	351
BstKTI	GATC	6 cut(s)	214, 304, 385, 465, 697, 750
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
BstMWI	GCNNNNNNNGC	1 cut(s)	864
BstNI	CCWGG	2 cut(s)	714, 752
BstNSI	RCATGY	2 cut(s)	492, 542
BstSCI	CCNGG	2 cut(s)	712, 750
BstSFI	CTRYAG	1 cut(s)	938
BstX2I	RGATCY	2 cut(s)	462, 747
BstYI	RGATCY	2 cut(s)	462, 747
BsuI	GTATCC	1 cut(s)	880
BsuRI	GGCC	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	919
BtsCI	GGATG	2 cut(s)	61, 366
BtsIMutI	CAGTG	2 cut(s)	451, 912
Cac8I	GCNNGC	2 cut(s)	105, 865
CfoI	GCGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	754
Csp6I	GTAC	4 cut(s)	157, 486, 532, 663
CviAII	CATG	5 cut(s)	356, 489, 539, 868, 920
CviJI	RGCY	8 cut(s)	48, 107, 149, 367, 416, 692, 717, 858
CviKI_1	RGCY	8 cut(s)	48, 107, 149, 367, 416, 692, 717, 858
CviQI	GTAC	4 cut(s)	157, 486, 532, 663
DdeI	CTNAG	3 cut(s)	396, 433, 854
DpnI	GATC	6 cut(s)	213, 303, 384, 464, 696, 749
DpnII	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	711
EarI	CTCTTC	1 cut(s)	711
Eco130I	CCWWGG	2 cut(s)	639, 919
Eco31I	GGTCTC	1 cut(s)	603
Eco47I	GGWCC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	264
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	2 cut(s)	712, 750
EcoT14I	CCWWGG	2 cut(s)	639, 919
ErhI	CCWWGG	2 cut(s)	639, 919
FaeI	CATG	5 cut(s)	359, 492, 542, 871, 923
FaqI	GGGAC	2 cut(s)	76, 152
FatI	CATG	5 cut(s)	355, 488, 538, 867, 919
FbaI	TGATCA	2 cut(s)	301, 382
FokI	GGATG	2 cut(s)	68, 373
FspBI	CTAG	1 cut(s)	845
GlaI	GCGC	1 cut(s)	350
GsuI	CTGGAG	3 cut(s)	171, 627, 696
HaeII	RGCGCY	1 cut(s)	352
HaeIII	GGCC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	351
Hin1II	CATG	5 cut(s)	359, 492, 542, 871, 923
Hin6I	GCGC	1 cut(s)	349
HinP1I	GCGC	1 cut(s)	349
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	2 cut(s)	46, 414
HinfI	GANTC	5 cut(s)	67, 131, 587, 625, 834
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	4 cut(s)	55, 306, 399, 699
Hpy188III	TCNNGA	5 cut(s)	266, 332, 562, 606, 815
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	1 cut(s)	877
HpyCH4III	ACNGT	3 cut(s)	79, 90, 916
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	5 cut(s)	245, 492, 731, 767, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	864
HpyF3I	CTNAG	3 cut(s)	396, 433, 854
HpySE526I	ACGT	1 cut(s)	596
Hsp92II	CATG	5 cut(s)	359, 492, 542, 871, 923
HspAI	GCGC	1 cut(s)	349
Ksp22I	TGATCA	2 cut(s)	301, 382
Kzo9I	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
LmnI	GCTCC	1 cut(s)	455
LweI	GCATC	6 cut(s)	13, 46, 511, 562, 781, 903
MaeI	CTAG	1 cut(s)	845
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	1 cut(s)	910
MalI	GATC	6 cut(s)	213, 303, 384, 464, 696, 749
MboI	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
MboII	GAAGA	3 cut(s)	320, 634, 698
MflI	RGATCY	2 cut(s)	462, 747
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	4 cut(s)	549, 578, 657, 924
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	61, 581
MnlI	CCTC	5 cut(s)	146, 401, 720, 817, 901
Mox20I	TGGCCA	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	446
Msp20I	TGGCCA	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	714, 752
Mva1269I	GAATGC	1 cut(s)	769
MvaI	CCWGG	2 cut(s)	714, 752
MwoI	GCNNNNNNNGC	1 cut(s)	864
NcoI	CCATGG	1 cut(s)	919
NdeII	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
NlaIII	CATG	5 cut(s)	359, 492, 542, 871, 923
NlaIV	GGNNCC	1 cut(s)	749
NmuCI	GTSAC	1 cut(s)	910
NspI	RCATGY	2 cut(s)	492, 542
OliI	CACNNNNGTG	1 cut(s)	446
PctI	GAATGC	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	3 cut(s)	131, 625, 834
PfoI	TCCNGGA	1 cut(s)	750
PleI	GAGTC	2 cut(s)	61, 581
PpsI	GAGTC	2 cut(s)	61, 581
Psp1406I	AACGTT	1 cut(s)	596
Psp6I	CCWGG	2 cut(s)	712, 750
PspGI	CCWGG	2 cut(s)	712, 750
PspN4I	GGNNCC	1 cut(s)	749
PspPI	GGNCC	1 cut(s)	754
PsuI	RGATCY	2 cut(s)	462, 747
RsaI	GTAC	4 cut(s)	158, 487, 533, 664
RsaNI	GTAC	4 cut(s)	157, 486, 532, 663
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	6 cut(s)	211, 301, 382, 462, 694, 747
Sau96I	GGNCC	1 cut(s)	754
SchI	GAGTC	2 cut(s)	61, 581
ScrFI	CCNGG	2 cut(s)	714, 752
SetI	ASST	8 cut(s)	50, 151, 290, 369, 418, 599, 809, 912
SfaNI	GCATC	6 cut(s)	13, 46, 511, 562, 781, 903
SfcI	CTRYAG	1 cut(s)	938
SinI	GGWCC	1 cut(s)	754
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	549, 578, 657, 924
SsiI	CCGC	2 cut(s)	575, 822
SspMI	CTAG	1 cut(s)	845
StyD4I	CCNGG	2 cut(s)	712, 750
StyI	CCWWGG	2 cut(s)	639, 919
TaaI	ACNGT	3 cut(s)	79, 90, 916
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	4 cut(s)	21, 369, 563, 881
TasI	AATT	4 cut(s)	549, 578, 657, 924
TatI	WGTACW	2 cut(s)	485, 531
TfiI	GAWTC	3 cut(s)	131, 625, 834
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	2 cut(s)	451, 919
TseFI	GTSAC	1 cut(s)	910
Tsp45I	GTSAC	1 cut(s)	910
TspDTI	ATGAA	7 cut(s)	87, 144, 344, 357, 377, 589, 826
TspGWI	ACGGA	1 cut(s)	760
TspRI	CASTG	2 cut(s)	451, 919
VpaK11BI	GGWCC	1 cut(s)	754
XapI	RAATTY	2 cut(s)	578, 924
XceI	RCATGY	2 cut(s)	492, 542
XcmI	CCANNNNNNNNNTGG	2 cut(s)	115, 822
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	1 cut(s)	845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.