Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

58654187 .. 58655983

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG269900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCAAACCTTAACTTGGAAAAAAATGTTTCAGGGGTTTTGAGATCATTTTCAGATTCACCGCCAACTCATTACTCCGTAGAAATACAGTTTTTTTCGTTGCTGATTGAAAAGTACTCAGAGAATGGATATGAATCGAAGGAGTTTGAAGCTGGAGGGTACAAATGGAAACTGGTGTTTCACCCAAATGGAAACAAAAAGAAGAATGTAAAAGACCACATCTCCCTCTACTTGGTAATAGCTGGAACAGATTCACTAGATAGTAGTTGGGAAGTATATGTTGATTTCAGACTGTTTCTGCTCGATCAGAATAAGGGAAACTACGTGGTTTTTGAAGATGCTTTAACAAAGAAGAAATGCTTTCATGGGGCAATGCGTAGTGCAGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTGGACGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAACAGGCAAAGGCGAGTGCCTAGCAAGGATGAAGGAAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTGGGTGCTGAATTTTATGAGTCTGAACCGTTCACTGCTGGGGGCTATAATTGGAAGTTACAGCTTTATCCTAATGGAAATGGCAAAGGCGAGGGTAGTCATCTGTCTTTGTTTTTGGAATTGGCTAGTCCCATAACCCTCCCCCCTGGCTCAGAACTATTTGTGGAGTATAGATTTCGCATCCTAGACCAAATTCGTCATCAGCATCATGATCCTTCTAGTGGTAAGGCCTGGTTCCGTGACGGTACAAGTTTGGGTTCGCGTAGATTCATTGGACAAGAATCTTTCAGGCAGGTAGAAAATGGGTTTTTGAAGAATGATGTTTGCATGGTAGAAGCAGAGGTGATCGTCCATGGAATTTCTAAAGTACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

316

Amino Acids

35.81

Weight (kDa)

6.23

Isoelectric Point (pI)

32.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 158	4e-34	MATH domain
MATH	PF00917	41 - 160	8.4e-12	MATH domain
MATH_2	PF22486	182 - 307	1.6e-33	MATH domain
MATH	PF00917	188 - 307	1.5e-08	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	374, 859
AccII	CGCG	1 cut(s)	838
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	782
AcsI	RAATTY	4 cut(s)	566, 587, 768, 933
AfaI	GTAC	4 cut(s)	116, 161, 823, 945
AfiI	CCNNNNNNNGG	3 cut(s)	16, 232, 797
AflIII	ACRYGT	2 cut(s)	452, 547
AgsI	TTSAA	5 cut(s)	110, 149, 335, 410, 889
AjnI	CCWGG	2 cut(s)	721, 806
AleI	CACNNNNGTG	1 cut(s)	455
AluBI	AGCT	3 cut(s)	152, 242, 640
AluI	AGCT	3 cut(s)	152, 242, 640
AlwI	GGATC	1 cut(s)	782
AoxI	GGCC	1 cut(s)	804
ApoI	RAATTY	4 cut(s)	566, 587, 768, 933
Asp700I	GAANNNNTTC	1 cut(s)	250
AsuHPI	GGTGA	3 cut(s)	51, 173, 931
BciT130I	CCWGG	2 cut(s)	723, 808
BfaI	CTAG	6 cut(s)	257, 440, 515, 702, 761, 795
BfmI	CTRYAG	1 cut(s)	947
BfuAI	ACCTGC	2 cut(s)	374, 859
BmcAI	AGTACT	2 cut(s)	116, 945
Bme1390I	CCNGG	2 cut(s)	723, 808
BmiI	GGNNCC	2 cut(s)	466, 812
BmrFI	CCNGG	2 cut(s)	723, 808
BmsI	GCATC	3 cut(s)	328, 765, 790
BpmI	CTGGAG	1 cut(s)	174
BsaAI	YACGTR	1 cut(s)	325
BsaBI	GATNNNNATC	1 cut(s)	133
BsaJI	CCNNGG	3 cut(s)	468, 721, 928
BsaXI	ACNNNNNCTCC	4 cut(s)	206, 236, 456, 486
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 232, 797
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	133
BseBI	CCWGG	2 cut(s)	723, 808
BseDI	CCNNGG	3 cut(s)	468, 721, 928
BseGI	GGATG	2 cut(s)	528, 756
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	3 cut(s)	16, 232, 797
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	132, 741
BseNI	ACTGG	1 cut(s)	177
BseYI	CCCAGC	1 cut(s)	614
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	1 cut(s)	806
BslFI	GGGAC	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	16, 232, 797
BsmFI	GGGAC	1 cut(s)	690
BsnI	GGCC	1 cut(s)	806
Bsp143I	GATC	4 cut(s)	44, 304, 787, 921
Bsp19I	CCATGG	1 cut(s)	928
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	806
BspCNI	CTCAG	2 cut(s)	131, 740
BspFNI	CGCG	1 cut(s)	838
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	2 cut(s)	466, 812
BspMI	ACCTGC	2 cut(s)	374, 859
BspPI	GGATC	1 cut(s)	782
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	468, 721, 928
BssMI	GATC	4 cut(s)	44, 304, 787, 921
BssT1I	CCWWGG	1 cut(s)	928
Bst2UI	CCWGG	2 cut(s)	723, 808
Bst4CI	ACNGT	4 cut(s)	90, 294, 606, 821
BstBAI	YACGTR	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	118, 727
BstDSI	CCRYGG	1 cut(s)	928
BstF5I	GGATG	2 cut(s)	528, 756
BstFNI	CGCG	1 cut(s)	838
BstKTI	GATC	4 cut(s)	47, 307, 790, 924
BstMBI	GATC	4 cut(s)	44, 304, 787, 921
BstNI	CCWGG	2 cut(s)	723, 808
BstNSI	RCATGY	2 cut(s)	456, 551
BstSCI	CCNGG	2 cut(s)	721, 806
BstSFI	CTRYAG	1 cut(s)	947
BstUI	CGCG	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	806
BtgI	CCRYGG	1 cut(s)	928
BtsCI	GGATG	2 cut(s)	528, 756
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	1 cut(s)	609
BveI	ACCTGC	2 cut(s)	374, 859
CciI	TCATGA	1 cut(s)	784
Csp6I	GTAC	4 cut(s)	115, 160, 822, 944
CviAII	CATG	6 cut(s)	365, 453, 548, 785, 904, 929
CviJI	RGCY	9 cut(s)	152, 242, 467, 533, 621, 640, 701, 726, 806
CviKI_1	RGCY	9 cut(s)	152, 242, 467, 533, 621, 640, 701, 726, 806
CviQI	GTAC	4 cut(s)	115, 160, 822, 944
DdeI	CTNAG	2 cut(s)	118, 727
DpnI	GATC	4 cut(s)	46, 306, 789, 923
DpnII	GATC	4 cut(s)	44, 304, 787, 921
Eco130I	CCWWGG	1 cut(s)	928
Eco147I	AGGCCT	1 cut(s)	806
EcoRII	CCWGG	2 cut(s)	721, 806
EcoT14I	CCWWGG	1 cut(s)	928
ErhI	CCWWGG	1 cut(s)	928
FaeI	CATG	6 cut(s)	368, 456, 551, 788, 907, 932
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FaqI	GGGAC	1 cut(s)	690
FatI	CATG	6 cut(s)	364, 452, 547, 784, 903, 928
FokI	GGATG	2 cut(s)	535, 743
FspBI	CTAG	6 cut(s)	257, 440, 515, 702, 761, 795
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	806
Hin1II	CATG	6 cut(s)	368, 456, 551, 788, 907, 932
HinfI	GANTC	6 cut(s)	56, 134, 251, 596, 843, 857
HphI	GGTGA	3 cut(s)	51, 173, 931
Hpy166II	GTNNAC	2 cut(s)	445, 609
Hpy188I	TCNGA	6 cut(s)	55, 121, 290, 309, 601, 730
Hpy188III	TCNNGA	2 cut(s)	407, 785
Hpy8I	GTNNAC	2 cut(s)	445, 609
HpyAV	CCTTC	4 cut(s)	133, 520, 550, 801
HpyCH4III	ACNGT	4 cut(s)	90, 294, 606, 821
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	3 cut(s)	383, 543, 903
HpyF3I	CTNAG	2 cut(s)	118, 727
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	6 cut(s)	368, 456, 551, 788, 907, 932
Kzo9I	GATC	4 cut(s)	44, 304, 787, 921
LmnI	GCTCC	1 cut(s)	464
LweI	GCATC	3 cut(s)	328, 765, 790
MaeI	CTAG	6 cut(s)	257, 440, 515, 702, 761, 795
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	633, 815
MalI	GATC	4 cut(s)	46, 306, 789, 923
MboI	GATC	4 cut(s)	44, 304, 787, 921
MboII	GAAGA	6 cut(s)	214, 347, 364, 422, 504, 901
MluCI	AATT	6 cut(s)	566, 587, 625, 695, 768, 933
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	8 cut(s)	149, 236, 414, 463, 544, 661, 725, 910
MroXI	GAANNNNTTC	1 cut(s)	250
MseI	TTAA	2 cut(s)	12, 344
MslI	CAYNNNNRTG	2 cut(s)	186, 455
MspR9I	CCNGG	2 cut(s)	723, 808
MvaI	CCWGG	2 cut(s)	723, 808
MvnI	CGCG	1 cut(s)	838
NcoI	CCATGG	1 cut(s)	928
NdeII	GATC	4 cut(s)	44, 304, 787, 921
NlaIII	CATG	6 cut(s)	368, 456, 551, 788, 907, 932
NlaIV	GGNNCC	2 cut(s)	466, 812
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	815
NspI	RCATGY	2 cut(s)	456, 551
OliI	CACNNNNGTG	1 cut(s)	455
PagI	TCATGA	1 cut(s)	784
PceI	AGGCCT	1 cut(s)	806
PciI	ACATGT	2 cut(s)	452, 547
PdmI	GAANNNNTTC	1 cut(s)	250
PfeI	GAWTC	5 cut(s)	56, 134, 251, 843, 857
PleI	GAGTC	1 cut(s)	604
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	1 cut(s)	325
PscI	ACATGT	2 cut(s)	452, 547
Psp6I	CCWGG	2 cut(s)	721, 806
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	2 cut(s)	721, 806
PspN4I	GGNNCC	2 cut(s)	466, 812
RsaI	GTAC	4 cut(s)	116, 161, 823, 945
RsaNI	GTAC	4 cut(s)	115, 160, 822, 944
RseI	CAYNNNNRTG	2 cut(s)	186, 455
SaqAI	TTAA	2 cut(s)	12, 344
Sau3AI	GATC	4 cut(s)	44, 304, 787, 921
ScaI	AGTACT	2 cut(s)	116, 945
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	2 cut(s)	723, 808
SfaNI	GCATC	3 cut(s)	328, 765, 790
SfcI	CTRYAG	1 cut(s)	947
SmiMI	CAYNNNNRTG	2 cut(s)	186, 455
Sse9I	AATT	6 cut(s)	566, 587, 625, 695, 768, 933
SseBI	AGGCCT	1 cut(s)	806
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	6 cut(s)	257, 440, 515, 702, 761, 795
StuI	AGGCCT	1 cut(s)	806
StyD4I	CCNGG	2 cut(s)	721, 806
StyI	CCWWGG	1 cut(s)	928
TaaI	ACNGT	4 cut(s)	90, 294, 606, 821
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	137, 303, 390
TasI	AATT	6 cut(s)	566, 587, 625, 695, 768, 933
TatI	WGTACW	2 cut(s)	114, 943
TfiI	GAWTC	5 cut(s)	56, 134, 251, 843, 857
Tru1I	TTAA	2 cut(s)	12, 344
Tru9I	TTAA	2 cut(s)	12, 344
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	1 cut(s)	815
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	5 cut(s)	147, 353, 539, 561, 835
TspGWI	ACGGA	2 cut(s)	67, 803
TspRI	CASTG	1 cut(s)	616
XapI	RAATTY	4 cut(s)	566, 587, 768, 933
XceI	RCATGY	2 cut(s)	456, 551
XmnI	GAANNNNTTC	1 cut(s)	250
XspI	CTAG	6 cut(s)	257, 440, 515, 702, 761, 795
ZrmI	AGTACT	2 cut(s)	116, 945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.