Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

9256730 .. 9259257

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCTCTTTCTGCAATTGAGAACTGGCATATTGGGACTACAAGATCCAAAAGAGACCTTCCACCAGCTCATTTTTCTTTGAAAATACAAGGCTACTCCTTATTACCAAAGACAGAAGCTGAAAAGTATGATTCCGGTGTTTTTGAAGCCGGAGGCCACAAATGGAGGTTGTCTCTTCACCCAAATGAAACAGAAGCAGGGATTGGCTACATCTCCCTCTACTTGGCCATAGCGGAAACAGATAGTTATCCCGAGGGGTGGGAGGTTTATGCTGACTATAAATTGTTTGTGCTCGATCATTTACAGAAGAAGTATTTAACTGTCCAAGATGCTGATGGAGATATGAAAAGGTTTCACAAGGAAAAGTCTGCGTGGGGATTTGCAAAGTTAATTACCCTTGAAGCTTTCAAAAATTCTTCCAATGGATATCTTGTTGATGACTGCTGCGAGTTTGGGGCAGAGGTTTTTGTTTATAGTCGCAATAGCGAATGGGAATCTCTTGCCATGGTTAAGGAACCTAGTGATGGTACTTTCCGCTATGAGATGGAAAATTTCTCAGCAAAAACTCAGTCCTCTTACGACTCCAAAGCGTTCACAGTTGGAGAACGAAATTGGAAGCTAAGGGTTTTTCCGAAAGGGAACACTGCTCAGAAAGGCAAAGCATTATCTTTATACTTACAATTGGATGACTACAAGAGCCTTCCACCTAATAGAGCAATATATGTAAAATACAAGCTCCGGATATTGGATCAAGTTAGTGGTAAACATGAACAAAGCACAGGTAGTCACTGGTTTTCTTCCTCAAACAGCTTTTGGGGTTATCCAATCTTTCTGACGTTGGAAAAACTCCATGATGACTCTAATGGGTTCATTAAGGATGATATGTTGATTGCTGAAATTGAATTCCTCGCCATCTCTGTGATTAAGGTTTACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

313

Amino Acids

35.71

Weight (kDa)

6.02

Isoelectric Point (pI)

34.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 155	9.4e-34	MATH domain
MATH	PF00917	40 - 157	1.6e-12	MATH domain
MATH_2	PF22486	178 - 301	4e-29	MATH domain
MATH	PF00917	184 - 301	6.2e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	738
AciI	CCGC	2 cut(s)	233, 535
AclWI	GGATC	2 cut(s)	39, 756
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	412, 550, 902
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	4 cut(s)	223, 258, 524, 745
AgsI	TTSAA	5 cut(s)	82, 146, 401, 409, 902
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	6 cut(s)	68, 119, 404, 619, 736, 810
AluI	AGCT	6 cut(s)	68, 119, 404, 619, 736, 810
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	48, 177
AlwI	GGATC	2 cut(s)	39, 756
AlwNI	CAGNNNCTG	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	251
Aor13HI	TCCGGA	1 cut(s)	738
AoxI	GGCC	2 cut(s)	154, 225
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	3 cut(s)	412, 550, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	554, 586
AsuHPI	GGTGA	1 cut(s)	170
AvaI	CYCGRG	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	4 cut(s)	329, 518, 538, 920
BcoDI	GTCTC	2 cut(s)	48, 177
BfaI	CTAG	1 cut(s)	519
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	516
BmsI	GCATC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	157, 189
Bpu10I	CCTNAGC	1 cut(s)	620
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	252, 504
BsaWI	WCCGGW	2 cut(s)	134, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	223, 258, 524, 745
Bse1I	ACTGG	2 cut(s)	29, 794
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	738
BseDI	CCNNGG	2 cut(s)	252, 504
BseGI	GGATG	2 cut(s)	691, 883
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	4 cut(s)	223, 258, 524, 745
BseMII	CTCAG	3 cut(s)	570, 581, 662
BseNI	ACTGG	2 cut(s)	29, 794
BseXI	GCAGC	1 cut(s)	431
BshFI	GGCC	2 cut(s)	156, 227
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	3 cut(s)	135, 150, 739
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	4 cut(s)	223, 258, 524, 745
BsmAI	GTCTC	2 cut(s)	48, 177
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	156, 227
Bso31I	GGTCTC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp13I	TCCGGA	1 cut(s)	738
Bsp143I	GATC	3 cut(s)	44, 295, 748
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	233, 535
BspANI	GGCC	2 cut(s)	156, 227
BspCNI	CTCAG	3 cut(s)	569, 580, 661
BspEI	TCCGGA	1 cut(s)	738
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	39, 756
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	29, 794
BssECI	CCNNGG	2 cut(s)	252, 504
BssMI	GATC	3 cut(s)	44, 295, 748
BssT1I	CCWWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	322, 598
Bst6I	CTCTTC	1 cut(s)	180
BstDEI	CTNAG	4 cut(s)	556, 567, 620, 648
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	691, 883
BstKTI	GATC	3 cut(s)	47, 298, 751
BstMAI	GTCTC	2 cut(s)	48, 177
BstMBI	GATC	3 cut(s)	44, 295, 748
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	156, 227
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	691, 883
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	2 cut(s)	642, 787
CaiI	CAGNNNCTG	1 cut(s)	119
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	4 cut(s)	505, 767, 851, 936
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	4 cut(s)	556, 567, 620, 648
DpnI	GATC	3 cut(s)	46, 297, 750
DpnII	GATC	3 cut(s)	44, 295, 748
EaeI	YGGCCR	1 cut(s)	225
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	504
Eco31I	GGTCTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	4 cut(s)	508, 770, 854, 939
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	4 cut(s)	504, 766, 850, 935
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	2 cut(s)	698, 890
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	1 cut(s)	445
HaeIII	GGCC	2 cut(s)	156, 227
HapII	CCGG	3 cut(s)	135, 150, 739
Hin1II	CATG	4 cut(s)	508, 770, 854, 939
HindIII	AAGCTT	1 cut(s)	402
HinfI	GANTC	4 cut(s)	131, 494, 581, 857
HpaII	CCGG	3 cut(s)	135, 150, 739
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	3 cut(s)	594, 764, 931
Hpy188I	TCNGA	3 cut(s)	633, 651, 834
Hpy188III	TCNNGA	2 cut(s)	251, 739
Hpy8I	GTNNAC	3 cut(s)	594, 764, 931
HpyAV	CCTTC	2 cut(s)	68, 710
HpyCH4III	ACNGT	2 cut(s)	322, 598
HpyCH4IV	ACGT	1 cut(s)	836
HpyCH4V	TGCA	2 cut(s)	14, 383
HpyF3I	CTNAG	4 cut(s)	556, 567, 620, 648
HpySE526I	ACGT	1 cut(s)	836
Hsp92II	CATG	4 cut(s)	508, 770, 854, 939
Kpn2I	TCCGGA	1 cut(s)	738
Kzo9I	GATC	3 cut(s)	44, 295, 748
LmnI	GCTCC	1 cut(s)	741
LpnPI	CCDG	8 cut(s)	10, 78, 148, 163, 183, 752, 765, 775
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	836
MaeIII	GTNAC	1 cut(s)	785
MalI	GATC	3 cut(s)	46, 297, 750
MboI	GATC	3 cut(s)	44, 295, 748
MboII	GAAGA	4 cut(s)	167, 319, 408, 789
MfeI	CAATTG	2 cut(s)	15, 680
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	9 cut(s)	15, 281, 390, 412, 550, 610, 680, 897, 902
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	575, 851
MmeI	TCCRAC	2 cut(s)	580, 819
Mox20I	TGGCCA	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	5 cut(s)	317, 389, 510, 873, 924
MslI	CAYNNNNRTG	2 cut(s)	183, 917
Msp20I	TGGCCA	1 cut(s)	227
MspI	CCGG	3 cut(s)	135, 150, 739
MunI	CAATTG	2 cut(s)	15, 680
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	44, 295, 748
NlaIII	CATG	4 cut(s)	508, 770, 854, 939
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	1 cut(s)	785
PfeI	GAWTC	2 cut(s)	131, 494
PkrI	GCNGC	1 cut(s)	446
PleI	GAGTC	2 cut(s)	575, 851
PpsI	GAGTC	2 cut(s)	575, 851
PspN4I	GGNNCC	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	2 cut(s)	183, 917
SaqAI	TTAA	5 cut(s)	317, 389, 510, 873, 924
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	3 cut(s)	44, 295, 748
SchI	GAGTC	2 cut(s)	575, 851
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	183, 917
Sse9I	AATT	9 cut(s)	15, 281, 390, 412, 550, 610, 680, 897, 902
SsiI	CCGC	2 cut(s)	233, 535
SspMI	CTAG	1 cut(s)	519
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	2 cut(s)	322, 598
TaiI	ACGT	1 cut(s)	839
TaqI	TCGA	1 cut(s)	294
TasI	AATT	9 cut(s)	15, 281, 390, 412, 550, 610, 680, 897, 902
TfiI	GAWTC	2 cut(s)	131, 494
Tru1I	TTAA	5 cut(s)	317, 389, 510, 873, 924
Tru9I	TTAA	5 cut(s)	317, 389, 510, 873, 924
TscAI	CASTG	2 cut(s)	649, 794
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	4 cut(s)	201, 359, 783, 859
TspRI	CASTG	2 cut(s)	649, 794
XapI	RAATTY	3 cut(s)	412, 550, 902
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.