Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

8641357 .. 8644544

Gene Structure 3188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCTAGTCTGATGTTTGGCCAACATGATGGGGTTTCAAGACCATTTTCAGATTCACCGCCAACTCATTACACTCTAAAAATAGAGGCGTTTTCGTTGCTGAAGAAGCATTCAACATCAGAGGGTAGCTTTGAGTCAGGGAAGTTTGACGCTGGAGGATACAAATGGAAACTGGTGTTCTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTAAAAATGGCTGGAGCAAATTCACTTGAGACTCGTTGGGAAGTCTCTGCTGATTTTAGATTGTTTTTGCTTGATCAGAATACGGGAAAATACTTGGTTCTTCAAGATGCTAATCTAAACAAGATTTGCTTGCACCGGGCGATGCTCGAAATGGGTTTCGATAGAGTTATCCCTCTGAAAGCATTTGCTGATGCTTCCAATGGCTATCTCGTTGATGACAAGTGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAGCAGGCAAGGCAGAGTGCCTATCAGGGATCAACAGTGCTTCTACGAACAAGTATGTTTGGAAGATTGAGAAATTTTCAAAGTCAAAAACCGAATGCTTGGAATCACAACCGTTCAATGCTGGAGGACAGACATGGAAGATAAAGCTCTATCCCAAGGGAGCTGACAACGGAAAGGGTACTCATGTTTCTATTTACTTAAAATGTGCTAATCCAGAAAAGCTATCTCCTGGCTCCCAAATACTTACAGAGTTCACTCTGCGCATCGTAGATCAATTGAATGCCAAGCATTTTTATGGTAAAGGTATTCAATGGTCCTCAGCTTTGGGTATTGGTTGGTCTAATTTCATTACATTGGGCAATTTCAATCGGTTAGACAAGGGTTATTTGCTGAAGGATACTTGCTTAATTGAGGCGGAGGTCACTGTCCATGGAATTGCTAAAGCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

315

Amino Acids

34.99

Weight (kDa)

9.05

Isoelectric Point (pI)

31.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	755
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	2 cut(s)	59, 908
AclWI	GGATC	1 cut(s)	530
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	250, 566
AcuI	CTGAAG	2 cut(s)	122, 905
AfaI	GTAC	1 cut(s)	673
AgsI	TTSAA	8 cut(s)	39, 114, 335, 573, 610, 772, 803, 859
AjnI	CCWGG	1 cut(s)	721
AluBI	AGCT	5 cut(s)	129, 640, 656, 715, 815
AluI	AGCT	5 cut(s)	129, 640, 656, 715, 815
Alw26I	GTCTC	2 cut(s)	254, 280
AlwI	GGATC	1 cut(s)	530
AoxI	GGCC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	250, 566
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	807
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	48
AvaII	GGWCC	1 cut(s)	807
BaeI	ACNNNNGTAYC	2 cut(s)	663, 696
BalI	TGGCCA	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	811
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	723
BciVI	GTATCC	2 cut(s)	152, 883
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	2 cut(s)	254, 280
BfaI	CTAG	1 cut(s)	6
BfuI	GTATCC	2 cut(s)	152, 883
Bme1390I	CCNGG	2 cut(s)	368, 723
Bme18I	GGWCC	1 cut(s)	807
BmgT120I	GGNCC	1 cut(s)	807
BmiI	GGNNCC	2 cut(s)	466, 727
BmrFI	CCNGG	2 cut(s)	368, 723
BmsI	GCATC	4 cut(s)	328, 363, 412, 765
BpiI	GAAGAC	1 cut(s)	219
BpmI	CTGGAG	3 cut(s)	174, 264, 636
Bpu10I	CCTNAGC	1 cut(s)	811
BpuEI	CTTGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	368
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	468, 648, 922
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bse1I	ACTGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	723
BseDI	CCNNGG	3 cut(s)	468, 648, 922
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	367
BsmAI	GTCTC	2 cut(s)	254, 280
BsmI	GAATGC	3 cut(s)	109, 593, 778
BsnI	GGCC	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	304, 522, 763
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	2 cut(s)	59, 908
BspANI	GGCC	1 cut(s)	21
BspCNI	CTCAG	1 cut(s)	824
BspLI	GGNNCC	2 cut(s)	466, 727
BspPI	GGATC	1 cut(s)	530
BspQI	GCTCTTC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	177
BssECI	CCNNGG	3 cut(s)	468, 648, 922
BssMI	GATC	3 cut(s)	304, 522, 763
BssT1I	CCWWGG	2 cut(s)	648, 922
Bst2UI	CCWGG	1 cut(s)	723
Bst4CI	ACNGT	3 cut(s)	530, 606, 919
Bst6I	CTCTTC	1 cut(s)	487
BstC8I	GCNNGC	2 cut(s)	362, 499
BstDEI	CTNAG	1 cut(s)	811
BstDSI	CCRYGG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	3 cut(s)	307, 525, 766
BstMAI	GTCTC	2 cut(s)	254, 280
BstMBI	GATC	3 cut(s)	304, 522, 763
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 503
BstNI	CCWGG	1 cut(s)	723
BstSCI	CCNGG	2 cut(s)	366, 721
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	152, 883
BsuRI	GGCC	1 cut(s)	21
BtgI	CCRYGG	1 cut(s)	922
BtgZI	GCGATG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	535, 915
Cac8I	GCNNGC	2 cut(s)	362, 499
CfoI	GCGC	1 cut(s)	756
Cfr13I	GGNCC	1 cut(s)	807
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	672
CviAII	CATG	4 cut(s)	26, 627, 677, 923
CviQI	GTAC	1 cut(s)	672
DdeI	CTNAG	1 cut(s)	811
DpnI	GATC	3 cut(s)	306, 524, 765
DpnII	GATC	3 cut(s)	304, 522, 763
EaeI	YGGCCR	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
EciI	GGCGGA	1 cut(s)	923
Eco130I	CCWWGG	2 cut(s)	648, 922
Eco47I	GGWCC	1 cut(s)	807
Eco57I	CTGAAG	2 cut(s)	122, 905
EcoRII	CCWGG	1 cut(s)	721
EcoT14I	CCWWGG	2 cut(s)	648, 922
ErhI	CCWWGG	2 cut(s)	648, 922
FaeI	CATG	4 cut(s)	29, 630, 680, 926
FaiI	YATR	7 cut(s)	27, 549, 628, 678, 789, 924, 943
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	4 cut(s)	25, 626, 676, 922
FbaI	TGATCA	1 cut(s)	304
FblI	GTMKAC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	755
GlaI	GCGC	1 cut(s)	755
GsuI	CTGGAG	3 cut(s)	174, 264, 636
HaeIII	GGCC	1 cut(s)	21
HapII	CCGG	1 cut(s)	367
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	4 cut(s)	29, 630, 680, 926
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	4 cut(s)	53, 134, 262, 596
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	48
Hpy166II	GTNNAC	2 cut(s)	229, 747
Hpy188I	TCNGA	5 cut(s)	12, 52, 121, 309, 408
Hpy188III	TCNNGA	3 cut(s)	39, 335, 707
Hpy8I	GTNNAC	2 cut(s)	229, 747
HpyAV	CCTTC	1 cut(s)	880
HpyCH4III	ACNGT	3 cut(s)	530, 606, 919
HpyCH4V	TGCA	1 cut(s)	364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 503
HpyF3I	CTNAG	1 cut(s)	811
Hsp92II	CATG	4 cut(s)	29, 630, 680, 926
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	304, 522, 763
LguI	GCTCTTC	1 cut(s)	487
LmnI	GCTCC	4 cut(s)	245, 464, 653, 731
LweI	GCATC	4 cut(s)	328, 363, 412, 765
MaeI	CTAG	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	3 cut(s)	306, 524, 765
MboI	GATC	3 cut(s)	304, 522, 763
MboII	GAAGA	8 cut(s)	115, 211, 214, 224, 323, 504, 568, 643
MfeI	CAATTG	1 cut(s)	767
MlsI	TGGCCA	1 cut(s)	21
MluCI	AATT	7 cut(s)	250, 566, 767, 835, 853, 900, 927
MluNI	TGGCCA	1 cut(s)	21
MlyI	GAGTC	2 cut(s)	143, 256
MnlI	CCTC	9 cut(s)	79, 115, 149, 414, 463, 611, 820, 898, 904
Mox20I	TGGCCA	1 cut(s)	21
MscI	TGGCCA	1 cut(s)	21
MseI	TTAA	3 cut(s)	233, 692, 899
MslI	CAYNNNNRTG	1 cut(s)	786
Msp20I	TGGCCA	1 cut(s)	21
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	2 cut(s)	368, 723
MunI	CAATTG	1 cut(s)	767
Mva1269I	GAATGC	3 cut(s)	109, 593, 778
MvaI	CCWGG	1 cut(s)	723
MwoI	GCNNNNNNNGC	2 cut(s)	106, 503
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	1 cut(s)	922
NdeII	GATC	3 cut(s)	304, 522, 763
NlaIII	CATG	4 cut(s)	29, 630, 680, 926
NlaIV	GGNNCC	2 cut(s)	466, 727
NmeAIII	GCCGAG	1 cut(s)	493
NmuCI	GTSAC	1 cut(s)	913
NsbI	TGCGCA	1 cut(s)	755
PciSI	GCTCTTC	1 cut(s)	487
PctI	GAATGC	3 cut(s)	109, 593, 778
PfeI	GAWTC	2 cut(s)	53, 596
PleI	GAGTC	2 cut(s)	142, 256
PpsI	GAGTC	2 cut(s)	142, 256
Psp6I	CCWGG	1 cut(s)	721
PspGI	CCWGG	1 cut(s)	721
PspN4I	GGNNCC	2 cut(s)	466, 727
PspPI	GGNCC	1 cut(s)	807
RsaI	GTAC	1 cut(s)	673
RsaNI	GTAC	1 cut(s)	672
RseI	CAYNNNNRTG	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	487
SaqAI	TTAA	3 cut(s)	233, 692, 899
Sau3AI	GATC	3 cut(s)	304, 522, 763
Sau96I	GGNCC	1 cut(s)	807
SchI	GAGTC	2 cut(s)	143, 256
ScrFI	CCNGG	2 cut(s)	368, 723
SetI	ASST	8 cut(s)	131, 474, 642, 658, 717, 799, 817, 915
SfaNI	GCATC	4 cut(s)	328, 363, 412, 765
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	7 cut(s)	250, 566, 767, 835, 853, 900, 927
SsiI	CCGC	2 cut(s)	59, 908
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	2 cut(s)	366, 721
StyI	CCWWGG	2 cut(s)	648, 922
TaaI	ACNGT	3 cut(s)	530, 606, 919
TaqI	TCGA	2 cut(s)	378, 390
TasI	AATT	7 cut(s)	250, 566, 767, 835, 853, 900, 927
TfiI	GAWTC	2 cut(s)	53, 596
Tru1I	TTAA	3 cut(s)	233, 692, 899
Tru9I	TTAA	3 cut(s)	233, 692, 899
TscAI	CASTG	2 cut(s)	535, 922
TseFI	GTSAC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	1 cut(s)	829
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	535, 922
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	2 cut(s)	250, 566
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.