Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002091.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

95971 .. 96915

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002091.1_g000024.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atgcttcgctcgcccagctttgataagcttatgcctcttaaagaatttactgatgcctcaaatggatatctcattgacgacacctgcgtgcttggagctgaggttttcgtttgtaaagaaagaacaaaaggcaaaagagagtatttttcaccgataaatgatgcctttatccgccctgcttgctggaagtttaagaatttttcaaagttgactgatgaatattttaggacagcaccattcgatgctggagaccagaaatggcggatacagctctttcccaagggatttgccaatggaaagggtactcatctttctattttcttgacattggctgataggaaactaattcctcccgtgtccaaaatatttgtaacgtttaccctgcgcatcgtagatcaaatgcatgccaagcataagtcttggacaggtaaacactgtttcactagcaagaagtcgtcgtggggtgcggctgacttcattagtctaagcattttggaggtggagaaagggcttttgatgaagaatacttgcattgtggaggcagaggtctttgtccgtggagtttctatagtactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

192

Amino Acids

21.86

Weight (kDa)

9.38

Isoelectric Point (pI)

23.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	386
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	3 cut(s)	172, 262, 467
AclI	AACGTT	1 cut(s)	374
AcsI	RAATTY	2 cut(s)	44, 196
AfaI	GTAC	2 cut(s)	304, 573
AgsI	TTSAA	1 cut(s)	204
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	18, 28, 98, 271
AluI	AGCT	4 cut(s)	18, 28, 98, 271
Alw26I	GTCTC	1 cut(s)	243
ApoI	RAATTY	2 cut(s)	44, 196
AspLEI	GCGC	1 cut(s)	387
AsuHPI	GGTGA	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	99
BciVI	GTATCC	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	444
BfmI	CTRYAG	2 cut(s)	567, 575
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	258
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmcAI	AGTACT	1 cut(s)	573
BmsI	GCATC	4 cut(s)	43, 151, 232, 396
BpmI	CTGGAG	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	279, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
BseDI	CCNNGG	2 cut(s)	279, 556
BseMII	CTCAG	1 cut(s)	90
BseYI	CCCAGC	1 cut(s)	14
BsmAI	GTCTC	1 cut(s)	243
Bso31I	GGTCTC	1 cut(s)	243
Bsp143I	GATC	1 cut(s)	394
BspACI	CCGC	3 cut(s)	172, 262, 467
BspCNI	CTCAG	1 cut(s)	91
BspMI	ACCTGC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	279, 556
BssMI	GATC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	437, 576
BstC8I	GCNNGC	4 cut(s)	11, 89, 181, 405
BstDEI	CTNAG	2 cut(s)	99, 485
BstDSI	CCRYGG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	387
BstKTI	GATC	1 cut(s)	397
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	394
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 15, 180, 268, 409
BstNSI	RCATGY	1 cut(s)	407
BstSFI	CTRYAG	2 cut(s)	567, 575
BsuI	GTATCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	4 cut(s)	11, 89, 181, 405
CfoI	GCGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	303, 572
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	7 cut(s)	18, 28, 98, 271, 332, 470, 511
CviKI_1	RGCY	7 cut(s)	18, 28, 98, 271, 332, 470, 511
CviQI	GTAC	2 cut(s)	303, 572
DdeI	CTNAG	2 cut(s)	99, 485
DpnI	GATC	1 cut(s)	396
DpnII	GATC	1 cut(s)	394
EciI	GGCGGA	2 cut(s)	161, 277
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	243
Eco32I	GATATC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	407
FaiI	YATR	4 cut(s)	32, 405, 414, 569
FatI	CATG	1 cut(s)	403
Fnu4HI	GCNGC	1 cut(s)	468
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	444
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	468
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	267
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	26
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	3 cut(s)	210, 378, 431
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	3 cut(s)	210, 378, 431
Hpy99I	CGWCG	1 cut(s)	460
HpyCH4III	ACNGT	2 cut(s)	437, 576
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	2 cut(s)	403, 531
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 15, 180, 268, 409
HpyF3I	CTNAG	2 cut(s)	99, 485
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	394
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	8 cut(s)	28, 97, 169, 189, 231, 266, 395, 411
LweI	GCATC	4 cut(s)	43, 151, 232, 396
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	396
MboI	GATC	1 cut(s)	394
MboII	GAAGA	1 cut(s)	532
MluCI	AATT	3 cut(s)	44, 196, 345
MnlI	CCTC	7 cut(s)	45, 67, 94, 360, 490, 532, 538
Mph1103I	ATGCAT	1 cut(s)	405
MseI	TTAA	2 cut(s)	39, 192
MslI	CAYNNNNRTG	1 cut(s)	86
MwoI	GCNNNNNNNGC	5 cut(s)	10, 15, 180, 268, 409
NdeII	GATC	1 cut(s)	394
NlaIII	CATG	1 cut(s)	407
NsbI	TGCGCA	1 cut(s)	386
NsiI	ATGCAT	1 cut(s)	405
NspI	RCATGY	1 cut(s)	407
OliI	CACNNNNGTG	1 cut(s)	86
PaeI	GCATGC	1 cut(s)	407
PaqCI	CACCTGC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	469
Psp1406I	AACGTT	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	14
RsaI	GTAC	2 cut(s)	304, 573
RsaNI	GTAC	2 cut(s)	303, 572
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	39, 192
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	1 cut(s)	394
ScaI	AGTACT	1 cut(s)	573
SfaNI	GCATC	4 cut(s)	43, 151, 232, 396
SfcI	CTRYAG	2 cut(s)	567, 575
SmiMI	CAYNNNNRTG	1 cut(s)	86
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	3 cut(s)	44, 196, 345
SsiI	CCGC	3 cut(s)	172, 262, 467
SspI	AATATT	2 cut(s)	221, 366
SspMI	CTAG	1 cut(s)	444
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	437, 576
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	240
TasI	AATT	3 cut(s)	44, 196, 345
TatI	WGTACW	1 cut(s)	571
TauI	GCSGC	1 cut(s)	470
Tru1I	TTAA	2 cut(s)	39, 192
Tru9I	TTAA	2 cut(s)	39, 192
TscAI	CASTG	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	231, 466, 533
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	440
XapI	RAATTY	2 cut(s)	44, 196
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	573
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.