Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

37238348 .. 37239492

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCTTGGCTTTCCGATGACCGTCGCTCGCGTCCTCTCGCTCTCTTCCGTTTGCGGTCGCCGGAACTCCACCGCTGCTTCTACTTCTCTTCAGTCCCTTTGCTCAGAGTCGACGGAACTCCCTCCTCTCCTCAACACCACGATTTCGGTGATTTCAGGTCCTCCTCCTTCTGGTTATGAAACGGCCAAAACCAACAAACAAGTCAAGCACAAAACCAAGCTTCTCAACTCCACCGAGCTCAGCAGTAGAACCAGCAAGAATGCCATCGTCATCAGAGGCCATGAAACGAATTTTCAAGAACAACACTTCTTGGTTTCTACCTGCCATATCGGTTTTCATACTCATCTGATCATAGAACTTCAACCGGGTTATGTTTTTCTCACTCTTGGTGGTACATTGAGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

135

Amino Acids

14.75

Weight (kDa)

9.45

Isoelectric Point (pI)

55.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	110
AccII	CGCG	1 cut(s)	30
AciI	CCGC	2 cut(s)	54, 72
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	296, 362
AluBI	AGCT	2 cut(s)	220, 238
AluI	AGCT	2 cut(s)	220, 238
Alw21I	GWGCWC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	183, 277
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	240
Bbv12I	GWGCWC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	2 cut(s)	272, 396
BceAI	ACGGC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	348
BcnI	CCSGG	1 cut(s)	366
BfuAI	ACCTGC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	75
BlpI	GCTNAGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	239
BpuMI	CCSGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	117, 253
BseRI	GAGGAG	3 cut(s)	114, 119, 153
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	30
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	185, 279
BsiEI	CGRYCG	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	240
BsiSI	CCGG	2 cut(s)	61, 365
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	2 cut(s)	185, 279
Bsp1286I	GDGCHC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	239
BspACI	CCGC	2 cut(s)	54, 72
BspANI	GGCC	2 cut(s)	185, 279
BspCNI	CTCAG	2 cut(s)	116, 252
BspFNI	CGCG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	329
BssMI	GATC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	49, 93
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	103, 239
BstFNI	CGCG	1 cut(s)	30
BstKTI	GATC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	348
BstMCI	CGRYCG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	1 cut(s)	61
BsuRI	GGCC	2 cut(s)	185, 279
BveI	ACCTGC	1 cut(s)	329
Cac8I	GCNNGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	5 cut(s)	9, 185, 220, 238, 279
CviKI_1	RGCY	5 cut(s)	9, 185, 220, 238, 279
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	103, 239
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	49, 93
EarI	CTCTTC	2 cut(s)	49, 93
Ecl136II	GAGCTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	158
Eco53kI	GAGCTC	1 cut(s)	238
Eco57I	CTGAAG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	158
EcoT38I	GRGCYC	1 cut(s)	240
FaeI	CATG	1 cut(s)	284
FaiI	YATR	6 cut(s)	177, 282, 327, 339, 353, 372
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	110
Fnu4HI	GCNGC	1 cut(s)	75
FriOI	GRGCYC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	185, 279
HapII	CCGG	2 cut(s)	61, 365
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	1 cut(s)	284
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	2 cut(s)	61, 365
HphI	GGTGA	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	4 cut(s)	15, 106, 275, 348
Hpy188III	TCNNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	2 cut(s)	26, 115
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	22
HpyF3I	CTNAG	2 cut(s)	103, 239
Hsp92II	CATG	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	6 cut(s)	74, 141, 156, 265, 334, 378
Lsp1109I	GCAGC	1 cut(s)	61
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	2 cut(s)	36, 80
MhlI	GDGCHC	1 cut(s)	240
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	44, 132, 135, 140, 171, 174, 269
MslI	CAYNNNNRTG	1 cut(s)	400
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	61, 365
MspR9I	CCNGG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	265
MvnI	CGCG	1 cut(s)	30
NciI	CCSGG	1 cut(s)	366
NdeII	GATC	1 cut(s)	348
NlaIII	CATG	1 cut(s)	284
PctI	GAATGC	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	158
PspPPI	RGGWCCY	1 cut(s)	158
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	109
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	348
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	240
SetI	ASST	4 cut(s)	160, 222, 240, 323
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	400
Sse9I	AATT	1 cut(s)	289
SsiI	CCGC	2 cut(s)	54, 72
SstI	GAGCTC	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	364
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	110
TasI	AATT	1 cut(s)	289
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	192, 297, 326
TspGWI	ACGGA	2 cut(s)	37, 128
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.