Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

10157270 .. 10160448

Gene Structure 3179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1132700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCATATTATTTTGTTGCAGGGGTTTCCAGATCATATTCAGATTCACCTCCAGCTCATTACATTAAAAAAAATAAAGTCGTTTTCAGTGCTAAAGAAACATTCAACACATGTACATCAATCAACGGAATTTGAAGCTGAAGGATACAAATGGAAACTGGCGCTCTACCCAAATGGAAACAAGAAGAAGAATGTGAAAGACTTCATCTCTGTCTACTTGGAAATGGCTGGAGTAAAATCACTTCCGGCTGGTTGGGAAGTATATGTTGATTTGAGAGTGTTTTTGCTTGATCAGAATAAGGGATCGTACTTGGTTCTCCAAGATCCTAATATAAAGCAAAAGTGCTTTCATGGGGCGATGCTTGATGCCGGTATTGATAAACTCATCTCACTGAAAGAATTTACTGATGCTTCCAATGGCTATCTGGTAAATGACGACTGCGTGGTTGGAGCTGAGGTCTTCGTTTGTAAAGAAAAAAGAGCAGCCAAGGCAGAGTTTCTATCAATGAGCTATTATTCTTTTACGTACAACATGAAGATCGTGCTCCATCCTAAGGGAGACTCGAACGGAAAAGGTACTCATATTTCTCTTTTCTTAGCATTGGCTGATCCAGAAACCCTCCCTCCTTGTTCGAAAACGTGTGTGGAGATTTCCCTGCGCATTGTCTATCGAATGAATCGCAAGACTAATCATTGTCAAAAAGCTACTAATCAATGGTTTGATGCCTCGAGTCCGAGTTGGGGTTGGTCTCACTTCATTGCACTGGACACTTTCTGTAAGGCCGGCAAGGGCGATTTTGTAAAGGATACTTGCTTGGTGGAGGCCGAGGTCACCGTCCATGGAAATTCTCAAATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

287

Amino Acids

32.25

Weight (kDa)

8.64

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	24 - 153	2.5e-30	MATH domain
MATH	PF00917	25 - 155	4.6e-11	MATH domain
MATH_2	PF22486	162 - 277	3.9e-21	MATH domain
MATH	PF00917	174 - 279	9.7e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	213
AclWI	GGATC	3 cut(s)	310, 317, 602
AcsI	RAATTY	3 cut(s)	128, 398, 844
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	4 cut(s)	114, 308, 527, 577
AfiI	CCNNNNNNNGG	2 cut(s)	553, 740
AflIII	ACRYGT	2 cut(s)	109, 638
AgsI	TTSAA	2 cut(s)	105, 134
AluBI	AGCT	5 cut(s)	55, 137, 452, 510, 704
AluI	AGCT	5 cut(s)	55, 137, 452, 510, 704
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	2 cut(s)	552, 753
AlwI	GGATC	3 cut(s)	310, 317, 602
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	2 cut(s)	780, 822
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	3 cut(s)	128, 398, 844
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	163, 660
AsuHPI	GGTGA	2 cut(s)	38, 823
AsuII	TTCGAA	1 cut(s)	632
AvaI	CYCGRG	1 cut(s)	727
AxyI	CCTNAGG	1 cut(s)	552
BarI	GAAGNNNNNNTAC	2 cut(s)	225, 257
BbsI	GAAGAC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	546
BbvCI	CCTCAGC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	494
BccI	CCATC	1 cut(s)	555
BciVI	GTATCC	2 cut(s)	137, 799
BclI	TGATCA	1 cut(s)	289
BcoDI	GTCTC	2 cut(s)	552, 753
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	2 cut(s)	137, 799
BisI	GCNGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	484
BmeT110I	CYCGRG	1 cut(s)	727
BmsI	GCATC	4 cut(s)	348, 355, 397, 712
BpiI	GAAGAC	1 cut(s)	451
BpmI	CTGGAG	2 cut(s)	35, 249
Bpu10I	CCTNAGC	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	632
BsaAI	YACGTR	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	3 cut(s)	486, 825, 838
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 471, 607, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	553, 740
Bse118I	RCCGGY	2 cut(s)	368, 782
Bse1I	ACTGG	2 cut(s)	162, 768
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	756
BseDI	CCNNGG	3 cut(s)	486, 825, 838
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	553, 740
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	2 cut(s)	162, 768
BseXI	GCAGC	1 cut(s)	494
BshFI	GGCC	2 cut(s)	782, 824
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	727
BsiSI	CCGG	3 cut(s)	245, 369, 783
BslI	CCNNNNNNNGG	2 cut(s)	553, 740
BsmAI	GTCTC	2 cut(s)	552, 753
BsnI	GGCC	2 cut(s)	782, 824
Bso31I	GGTCTC	1 cut(s)	753
BsoBI	CYCGRG	1 cut(s)	727
Bsp119I	TTCGAA	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	546
Bsp1407I	TGTACA	1 cut(s)	112
Bsp143I	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
Bsp19I	CCATGG	1 cut(s)	838
BspANI	GGCC	2 cut(s)	782, 824
BspCNI	CTCAG	1 cut(s)	445
BspPI	GGATC	3 cut(s)	310, 317, 602
BspT104I	TTCGAA	1 cut(s)	632
BspTNI	GGTCTC	1 cut(s)	753
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	2 cut(s)	368, 782
BsrGI	TGTACA	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	162, 768
BssAI	RCCGGY	2 cut(s)	368, 782
BssECI	CCNNGG	3 cut(s)	486, 825, 838
BssMI	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
BssT1I	CCWWGG	2 cut(s)	486, 838
Bst4CI	ACNGT	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	112
BstBAI	YACGTR	1 cut(s)	525
BstBI	TTCGAA	1 cut(s)	632
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	453, 552, 595
BstDSI	CCRYGG	1 cut(s)	838
BstEII	GGTNACC	1 cut(s)	829
BstF5I	GGATG	1 cut(s)	547
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 660
BstKTI	GATC	6 cut(s)	34, 292, 305, 325, 540, 610
BstMAI	GTCTC	2 cut(s)	552, 753
BstMBI	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	829
BstSNI	TACGTA	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	494
BstV2I	GAAGAC	1 cut(s)	451
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
Bsu36I	CCTNAGG	1 cut(s)	552
BsuI	GTATCC	2 cut(s)	137, 799
BsuRI	GGCC	2 cut(s)	782, 824
BtgI	CCRYGG	1 cut(s)	838
BtgZI	GCGATG	1 cut(s)	371
BtsCI	GGATG	1 cut(s)	547
BtsIMutI	CAGTG	3 cut(s)	93, 389, 761
Cac8I	GCNNGC	1 cut(s)	784
CfoI	GCGC	2 cut(s)	163, 660
Cfr10I	RCCGGY	2 cut(s)	368, 782
Csp6I	GTAC	4 cut(s)	113, 307, 526, 576
CviAII	CATG	4 cut(s)	110, 350, 532, 839
CviQI	GTAC	4 cut(s)	113, 307, 526, 576
DdeI	CTNAG	3 cut(s)	453, 552, 595
DpnI	GATC	6 cut(s)	33, 291, 304, 324, 539, 609
DpnII	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
Eco105I	TACGTA	1 cut(s)	525
Eco130I	CCWWGG	2 cut(s)	486, 838
Eco31I	GGTCTC	1 cut(s)	753
Eco57I	CTGAAG	1 cut(s)	159
Eco81I	CCTNAGG	1 cut(s)	552
Eco88I	CYCGRG	1 cut(s)	727
Eco91I	GGTNACC	1 cut(s)	829
EcoO65I	GGTNACC	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	486, 838
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	486, 838
FaeI	CATG	4 cut(s)	113, 353, 535, 842
FatI	CATG	4 cut(s)	109, 349, 531, 838
FbaI	TGATCA	1 cut(s)	289
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	483
FokI	GGATG	1 cut(s)	534
Fsp4HI	GCNGC	1 cut(s)	483
FspI	TGCGCA	1 cut(s)	659
GlaI	GCGC	2 cut(s)	162, 659
GluI	GCNGC	1 cut(s)	483
GsuI	CTGGAG	2 cut(s)	35, 249
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	782, 824
HapII	CCGG	3 cut(s)	245, 369, 783
HhaI	GCGC	2 cut(s)	163, 660
Hin1II	CATG	4 cut(s)	113, 353, 535, 842
Hin6I	GCGC	2 cut(s)	161, 658
HinP1I	GCGC	2 cut(s)	161, 658
HinfI	GANTC	4 cut(s)	43, 560, 676, 730
HpaII	CCGG	3 cut(s)	245, 369, 783
HphI	GGTGA	2 cut(s)	38, 823
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	42, 294, 735
Hpy188III	TCNNGA	2 cut(s)	29, 611
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	835
HpyCH4IV	ACGT	2 cut(s)	524, 638
HpyCH4V	TGCA	3 cut(s)	4, 19, 761
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	3 cut(s)	453, 552, 595
HpySE526I	ACGT	2 cut(s)	524, 638
Hsp92II	CATG	4 cut(s)	113, 353, 535, 842
HspAI	GCGC	2 cut(s)	161, 658
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
LmnI	GCTCC	2 cut(s)	449, 549
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	4 cut(s)	348, 355, 397, 712
MaeII	ACGT	2 cut(s)	524, 638
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	6 cut(s)	33, 291, 304, 324, 539, 609
MboI	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
MboII	GAAGA	4 cut(s)	196, 199, 451, 547
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	546
MluCI	AATT	3 cut(s)	128, 398, 844
MlyI	GAGTC	2 cut(s)	554, 739
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	7 cut(s)	59, 448, 629, 633, 736, 814, 820
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	782
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	65
MspI	CCGG	3 cut(s)	245, 369, 783
MwoI	GCNNNNNNNGC	1 cut(s)	488
NaeI	GCCGGC	1 cut(s)	784
NcoI	CCATGG	1 cut(s)	838
NdeII	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
NgoMIV	GCCGGC	1 cut(s)	782
NlaIII	CATG	4 cut(s)	113, 353, 535, 842
NmeAIII	GCCGAG	1 cut(s)	850
NmuCI	GTSAC	1 cut(s)	829
NsbI	TGCGCA	1 cut(s)	659
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	113
NspV	TTCGAA	1 cut(s)	632
PaeR7I	CTCGAG	1 cut(s)	727
PciI	ACATGT	1 cut(s)	109
PdiI	GCCGGC	1 cut(s)	784
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	43, 676
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	554, 738
PpsI	GAGTC	2 cut(s)	554, 738
Ppu21I	YACGTR	1 cut(s)	525
PscI	ACATGT	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	829
PspXI	VCTCGAGB	1 cut(s)	727
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	4 cut(s)	114, 308, 527, 577
RsaNI	GTAC	4 cut(s)	113, 307, 526, 576
SaqAI	TTAA	1 cut(s)	65
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	6 cut(s)	31, 289, 302, 322, 537, 607
SchI	GAGTC	2 cut(s)	554, 739
SduI	GDGCHC	1 cut(s)	546
SfaNI	GCATC	4 cut(s)	348, 355, 397, 712
Sfr274I	CTCGAG	1 cut(s)	727
SfuI	TTCGAA	1 cut(s)	632
SlaI	CTCGAG	1 cut(s)	727
SmlI	CTYRAG	1 cut(s)	727
SmoI	CTYRAG	1 cut(s)	727
SnaBI	TACGTA	1 cut(s)	525
Sse9I	AATT	3 cut(s)	128, 398, 844
StyI	CCWWGG	2 cut(s)	486, 838
TaaI	ACNGT	1 cut(s)	835
TaiI	ACGT	2 cut(s)	527, 641
TaqI	TCGA	4 cut(s)	563, 632, 670, 728
TasI	AATT	3 cut(s)	128, 398, 844
TatI	WGTACW	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	43, 676
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	3 cut(s)	93, 396, 768
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	829
TspDTI	ATGAA	5 cut(s)	193, 338, 548, 689, 745
TspGWI	ACGGA	2 cut(s)	140, 582
TspRI	CASTG	3 cut(s)	93, 396, 768
XapI	RAATTY	3 cut(s)	128, 398, 844
XceI	RCATGY	1 cut(s)	113
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XhoI	CTCGAG	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.