Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

50587095 .. 50590420

Gene Structure 3326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00368900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGAAAAAATAGAGCTCTTGTAATTGAACTTTTGAATTGCAGGCAATGTGAAATTAATTGTTCTTCTCATGTTGATTGCAGGGAGATACAGTTGTATCCCAAGAGAAATTCCCACGGAATGGGGACTCATCTTTCTCTTTACTGGGCATTATTTGATTCTAAACCAAGTCCTCCTGTGTCCAAAATATTTGCAGAGTTTTGCCTGCTCATTGTAGATCAAAAGCATGCCAATCATCAGACTTGGTCAGGTAAACACTGTTTCAGTGCCATGTCTTCCTCATGGGGTTTGTCTAAATTCATTAGTCTAAGCACTTTCAGTGAAGCGGACATGGGGTTGTTGATGAAGAATACTTGCATTCTGGAGGTTGAGGTCACTCAAGAAAAGGGTTTGGATAAATCTAGGGTCACAAGTACGTTGCTAGTCTTGCTAAACCTATGGTTTGAGTCACATGTAATTCGCGAAAACATTTTGCTACTCAATTGGAATGGACACAAGACATATACGAATCTAGTGTTACTCCTAGCATTAGAATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

179

Amino Acids

20.35

Weight (kDa)

7.65

Isoelectric Point (pI)

32.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	29 - 125	1.1e-16	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AccII	CGCG	1 cut(s)	462
AciI	CCGC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	109, 296
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	29, 37
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw21I	GWGCWC	1 cut(s)	19
ApoI	RAATTY	2 cut(s)	109, 296
AseI	ATTAAT	1 cut(s)	57
BaeI	ACNNNNGTAYC	4 cut(s)	80, 80, 113, 113
BanII	GRGCYC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	19
BciVI	GTATCC	1 cut(s)	108
BfaI	CTAG	4 cut(s)	402, 422, 512, 524
BfuI	GTATCC	1 cut(s)	108
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BpiI	GAAGAC	1 cut(s)	267
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	77, 107
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	149
Bse3DI	GCAATG	1 cut(s)	53
BseDI	CCNNGG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	462
BsiHKAI	GWGCWC	1 cut(s)	19
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	217
Bsp68I	TCGCGA	1 cut(s)	462
BspACI	CCGC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	462
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	93, 260
BstC8I	GCNNGC	3 cut(s)	44, 206, 228
BstDEI	CTNAG	1 cut(s)	308
BstDSI	CCRYGG	1 cut(s)	115
BstFNI	CGCG	1 cut(s)	462
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNSI	RCATGY	2 cut(s)	230, 455
BstUI	CGCG	1 cut(s)	462
BstV2I	GAAGAC	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	256, 271, 325
BtuMI	TCGCGA	1 cut(s)	462
Cac8I	GCNNGC	3 cut(s)	44, 206, 228
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	6 cut(s)	71, 227, 271, 282, 331, 452
CviJI	RGCY	1 cut(s)	17
CviKI_1	RGCY	1 cut(s)	17
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	19
FaeI	CATG	6 cut(s)	74, 230, 274, 285, 334, 455
FaiI	YATR	9 cut(s)	72, 228, 272, 283, 332, 439, 453, 502, 504
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	6 cut(s)	70, 226, 270, 281, 330, 451
FriOI	GRGCYC	1 cut(s)	19
FspBI	CTAG	4 cut(s)	402, 422, 512, 524
GsuI	CTGGAG	1 cut(s)	383
Hin1II	CATG	6 cut(s)	74, 230, 274, 285, 334, 455
HinfI	GANTC	5 cut(s)	127, 158, 446, 508, 533
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	3 cut(s)	362, 380, 461
Hpy8I	GTNNAC	1 cut(s)	254
HpyCH4III	ACNGT	2 cut(s)	93, 260
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	4 cut(s)	42, 81, 194, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	6 cut(s)	74, 230, 274, 285, 334, 455
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	28, 67, 130, 189, 218, 234, 347
MaeI	CTAG	4 cut(s)	402, 422, 512, 524
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	4 cut(s)	373, 406, 447, 516
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	57, 267, 358
MfeI	CAATTG	1 cut(s)	481
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	8 cut(s)	24, 37, 54, 58, 109, 296, 456, 481
MlyI	GAGTC	2 cut(s)	121, 455
MnlI	CCTC	4 cut(s)	183, 289, 358, 364
MseI	TTAA	1 cut(s)	57
MunI	CAATTG	1 cut(s)	481
Mva1269I	GAATGC	1 cut(s)	357
MvnI	CGCG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	427
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	6 cut(s)	74, 230, 274, 285, 334, 455
NmuCI	GTSAC	3 cut(s)	373, 406, 447
NruI	TCGCGA	1 cut(s)	462
NspI	RCATGY	2 cut(s)	230, 455
PaeI	GCATGC	1 cut(s)	230
PciI	ACATGT	1 cut(s)	451
PctI	GAATGC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	158, 508, 533
PflFI	GACNNNGTC	1 cut(s)	244
PflMI	CCANNNNNTGG	1 cut(s)	121
PleI	GAGTC	2 cut(s)	121, 454
PpsI	GAGTC	2 cut(s)	121, 454
PscI	ACATGT	1 cut(s)	451
PshBI	ATTAAT	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	19
PsyI	GACNNNGTC	1 cut(s)	244
RruI	TCGCGA	1 cut(s)	462
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SacI	GAGCTC	1 cut(s)	19
SaqAI	TTAA	1 cut(s)	57
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	2 cut(s)	121, 455
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	6 cut(s)	19, 253, 369, 375, 419, 438
SmlI	CTYRAG	1 cut(s)	378
SmoI	CTYRAG	1 cut(s)	378
SphI	GCATGC	1 cut(s)	230
Sse9I	AATT	8 cut(s)	24, 37, 54, 58, 109, 296, 456, 481
SsiI	CCGC	1 cut(s)	326
SspI	AATATT	1 cut(s)	189
SspMI	CTAG	4 cut(s)	402, 422, 512, 524
SstI	GAGCTC	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	93, 260
TaiI	ACGT	1 cut(s)	419
TasI	AATT	8 cut(s)	24, 37, 54, 58, 109, 296, 456, 481
TfiI	GAWTC	3 cut(s)	158, 508, 533
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TscAI	CASTG	3 cut(s)	263, 271, 325
TseFI	GTSAC	3 cut(s)	373, 406, 447
Tsp45I	GTSAC	3 cut(s)	373, 406, 447
TspDTI	ATGAA	2 cut(s)	289, 359
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	3 cut(s)	263, 271, 325
Tth111I	GACNNNGTC	1 cut(s)	244
Van91I	CCANNNNNTGG	1 cut(s)	121
VspI	ATTAAT	1 cut(s)	57
XapI	RAATTY	2 cut(s)	109, 296
XceI	RCATGY	2 cut(s)	230, 455
XspI	CTAG	4 cut(s)	402, 422, 512, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.