Rh4CG290700

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
54921003 .. 54923208
2206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG290700.1

Sequence Viewer

Length: 930 bp
ATGGCAAACCTTAACTTGGAAAAAGATGTTTCAGGTGTTTTGAGATCGTTTTCAGATTCACCGCCAACTCATTACTCCGTAGAAATACAGTTGTTTTCGTTGCTTATTGAAACGTACTCAGAGAATGGATATGAATCGAAGGAGTTTGAAGCTGGAGGGTACAAATGGAAACTGGTGTTTCACCCAAATGGAAACAAAAAGAAGAATGTAAAAGATCACATCTCCCTCTACTTGGTAATAGCTGGAACAGATTCACTAGATAGTAGTTGGGAAGTATATGTTGATTTCAGACTGTTTCTGCTCGATCAGAATAAGGGAAACTACTTGGTTTTTGAAGATTCTTTAACAAAGAAGAAATGCTTTCATGGGGCAATGCGTAGTGCAGGTTTCGATAAACTTATCCCTCTTGAAGATTTTACTGATGTTTCCAATGGATTTCTAGTCGACGACACATGTGTGTTTGGAGCCGAGGTCTTTGTTTGTAAAGAAAGAAGAACAGGCAAAGGCGAGTGCCTAGCAAGGATGAAGGAAGCCTCTGTATGCAAACATGTTTGGAAGGTTGAGAAATTTTCATCTTTGGATGCTGCATATGAGTCTGAACCGTTCACTGCTGGGGGCTATAATTGGAAGATAAAGCTTTATCCTAAGGGATGTGGCGAAGGTAAGGGTAGTCATCTTTCTCTATTTTTGCACTTGGCTAGTCCCATAACCCTCCCCCCTGGCTCTGAACTATTTGTGGAGTATAGATTTCGCATTCTGGATCAAATTCATCACCAGCATCATCATCCTTCAAGTGCTAAGAACTGGTTCAGTCACTTCCGTGACGGTACAGGTTGGGGTTGCCGTAAATTCATTGAACAAGAAACTTTCGGGCAGGTAGACAAGGGGTTTTTGAAGAATGATGCTTGCATAGTGGAAGCAGAGGGATAA

Protein Analysis

309

Amino Acids

35.05

Weight (kDa)

6.23

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 24 - 158 2.4e-34 MATH domain
MATH PF00917 41 - 160 7e-12 MATH domain
MATH_2 PF22486 182 - 308 6e-35 MATH domain
MATH PF00917 188 - 308 4.9e-10 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 374, 865
AccI GTMKAC 2 cut(s) 444, 879
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 768
AcsI RAATTY 3 cut(s) 566, 765, 848
AfaI GTAC 3 cut(s) 116, 161, 829
AfiI CCNNNNNNNGG 2 cut(s) 16, 232
AflIII ACRYGT 2 cut(s) 452, 547
AgsI TTSAA 7 cut(s) 110, 149, 335, 410, 792, 857, 895
AjnI CCWGG 1 cut(s) 718
AleI CACNNNNGTG 2 cut(s) 455, 819
AluBI AGCT 3 cut(s) 152, 242, 637
AluI AGCT 3 cut(s) 152, 242, 637
AlwI GGATC 1 cut(s) 768
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 3 cut(s) 566, 765, 848
Asp700I GAANNNNTTC 2 cut(s) 250, 806
AsuHPI GGTGA 3 cut(s) 51, 173, 764
AxyI CCTNAGG 1 cut(s) 645
BbvI GCAGC 1 cut(s) 571
BceAI ACGGC 1 cut(s) 828
BciT130I CCWGG 1 cut(s) 720
BfaI CTAG 4 cut(s) 257, 440, 515, 699
BfuAI ACCTGC 2 cut(s) 374, 865
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
Bme1390I CCNGG 1 cut(s) 720
BmiI GGNNCC 1 cut(s) 466
BmrFI CCNGG 1 cut(s) 720
BmsI GCATC 3 cut(s) 571, 787, 892
BpmI CTGGAG 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 468, 718
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 232
Bse1I ACTGG 2 cut(s) 177, 809
Bse21I CCTNAGG 1 cut(s) 645
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 133
BseBI CCWGG 1 cut(s) 720
BseDI CCNNGG 2 cut(s) 468, 718
BseGI GGATG 4 cut(s) 528, 586, 656, 784
BseJI GATNNNNATC 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 16, 232
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 2 cut(s) 177, 809
BseXI GCAGC 1 cut(s) 571
BseYI CCCAGC 1 cut(s) 611
BsgI GTGCAG 1 cut(s) 402
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 2 cut(s) 16, 232
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 753
Bsp143I GATC 4 cut(s) 44, 214, 304, 760
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 466
BspMI ACCTGC 2 cut(s) 374, 865
BspPI GGATC 1 cut(s) 768
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 2 cut(s) 177, 809
BssECI CCNNGG 2 cut(s) 468, 718
BssMI GATC 4 cut(s) 44, 214, 304, 760
Bst2UI CCWGG 1 cut(s) 720
Bst4CI ACNGT 4 cut(s) 90, 294, 603, 827
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 3 cut(s) 118, 645, 798
BstF5I GGATG 4 cut(s) 528, 586, 656, 784
BstKTI GATC 4 cut(s) 47, 217, 307, 763
BstMBI GATC 4 cut(s) 44, 214, 304, 760
BstNI CCWGG 1 cut(s) 720
BstNSI RCATGY 2 cut(s) 456, 551
BstSCI CCNGG 1 cut(s) 718
BstV1I GCAGC 1 cut(s) 571
Bsu36I CCTNAGG 1 cut(s) 645
BtsCI GGATG 4 cut(s) 528, 586, 656, 784
BtsI GCAGTG 1 cut(s) 606
BtsIMutI CAGTG 1 cut(s) 606
BveI ACCTGC 2 cut(s) 374, 865
Cac8I GCNNGC 1 cut(s) 907
Csp6I GTAC 3 cut(s) 115, 160, 828
CviAII CATG 3 cut(s) 365, 453, 548
CviJI RGCY 8 cut(s) 152, 242, 467, 533, 618, 637, 698, 723
CviKI_1 RGCY 8 cut(s) 152, 242, 467, 533, 618, 637, 698, 723
CviQI GTAC 3 cut(s) 115, 160, 828
DdeI CTNAG 3 cut(s) 118, 645, 798
DpnI GATC 4 cut(s) 46, 216, 306, 762
DpnII GATC 4 cut(s) 44, 214, 304, 760
Eco81I CCTNAGG 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 718
FaeI CATG 3 cut(s) 368, 456, 551
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FaqI GGGAC 1 cut(s) 687
FatI CATG 3 cut(s) 364, 452, 547
FauNDI CATATG 1 cut(s) 589
FblI GTMKAC 2 cut(s) 444, 879
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 4 cut(s) 535, 593, 663, 771
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 4 cut(s) 257, 440, 515, 699
GluI GCNGC 1 cut(s) 585
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 174
Hin1II CATG 3 cut(s) 368, 456, 551
HincII GTYRAC 1 cut(s) 445
HindII GTYRAC 1 cut(s) 445
HindIII AAGCTT 1 cut(s) 635
HinfI GANTC 5 cut(s) 56, 134, 251, 338, 593
HphI GGTGA 3 cut(s) 51, 173, 764
Hpy166II GTNNAC 3 cut(s) 445, 606, 880
Hpy188I TCNGA 6 cut(s) 55, 121, 290, 309, 598, 727
Hpy188III TCNNGA 2 cut(s) 407, 758
Hpy8I GTNNAC 3 cut(s) 445, 606, 880
Hpy99I CGWCG 1 cut(s) 449
HpyAV CCTTC 5 cut(s) 133, 520, 550, 653, 798
HpyCH4III ACNGT 4 cut(s) 90, 294, 603, 827
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 5 cut(s) 383, 543, 587, 691, 909
HpyF3I CTNAG 3 cut(s) 118, 645, 798
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 3 cut(s) 368, 456, 551
Kzo9I GATC 4 cut(s) 44, 214, 304, 760
LmnI GCTCC 1 cut(s) 464
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 3 cut(s) 571, 787, 892
MaeI CTAG 4 cut(s) 257, 440, 515, 699
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 812, 821
MalI GATC 4 cut(s) 46, 216, 306, 762
MboI GATC 4 cut(s) 44, 214, 304, 760
MboII GAAGA 7 cut(s) 214, 347, 364, 422, 504, 640, 907
MluCI AATT 4 cut(s) 566, 622, 765, 848
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 7 cut(s) 149, 236, 414, 463, 544, 722, 916
MroXI GAANNNNTTC 2 cut(s) 250, 806
MseI TTAA 2 cut(s) 12, 344
MslI CAYNNNNRTG 3 cut(s) 186, 455, 819
MspR9I CCNGG 1 cut(s) 720
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 1 cut(s) 720
NdeI CATATG 1 cut(s) 589
NdeII GATC 4 cut(s) 44, 214, 304, 760
NlaIII CATG 3 cut(s) 368, 456, 551
NlaIV GGNNCC 1 cut(s) 466
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 2 cut(s) 812, 821
NspI RCATGY 2 cut(s) 456, 551
OliI CACNNNNGTG 2 cut(s) 455, 819
PciI ACATGT 2 cut(s) 452, 547
PctI GAATGC 1 cut(s) 753
PdmI GAANNNNTTC 2 cut(s) 250, 806
PfeI GAWTC 4 cut(s) 56, 134, 251, 338
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PscI ACATGT 2 cut(s) 452, 547
Psp6I CCWGG 1 cut(s) 718
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 1 cut(s) 718
PspN4I GGNNCC 1 cut(s) 466
RsaI GTAC 3 cut(s) 116, 161, 829
RsaNI GTAC 3 cut(s) 115, 160, 828
RseI CAYNNNNRTG 3 cut(s) 186, 455, 819
SalI GTCGAC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 12, 344
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 4 cut(s) 44, 214, 304, 760
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 720
SfaNI GCATC 3 cut(s) 571, 787, 892
SmiMI CAYNNNNRTG 3 cut(s) 186, 455, 819
Sse9I AATT 4 cut(s) 566, 622, 765, 848
SsiI CCGC 1 cut(s) 62
SspMI CTAG 4 cut(s) 257, 440, 515, 699
StyD4I CCNGG 1 cut(s) 718
TaaI ACNGT 4 cut(s) 90, 294, 603, 827
TaiI ACGT 1 cut(s) 116
TaqI TCGA 4 cut(s) 137, 303, 390, 444
TasI AATT 4 cut(s) 566, 622, 765, 848
TfiI GAWTC 4 cut(s) 56, 134, 251, 338
Tru1I TTAA 2 cut(s) 12, 344
Tru9I TTAA 2 cut(s) 12, 344
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 812, 821
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 2 cut(s) 812, 821
TspDTI ATGAA 6 cut(s) 147, 353, 539, 561, 758, 841
TspGWI ACGGA 2 cut(s) 67, 809
TspRI CASTG 1 cut(s) 613
XapI RAATTY 3 cut(s) 566, 765, 848
XceI RCATGY 2 cut(s) 456, 551
XmiI GTMKAC 2 cut(s) 444, 879
XmnI GAANNNNTTC 2 cut(s) 250, 806
XspI CTAG 4 cut(s) 257, 440, 515, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.