Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

38179068 .. 38182919

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0222200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGGCAAGAAAGATCAGCACCAGCAAATAATAAGGGATCTCATGAGAGACAACCCCAAAGTCGAAGCCGTTCTTCACCTTCTCAGAAAACAAGCCCCGCTGACGGTAAAACAGGAGAAGTTTTGTAACAGTGCTTGTGTGCAGAGGTTTCTGAAAGCGAAAGGGGAGAGTGTGAAGAAGTCGGCCAAGGCACTCAGAGCTTGCCTTTCCTGGAGAAACACTATTGGGACTGAAAACTTGATAGCAGATGAGTTCTCTGCTGAACTTGCAGAAGGCGTTGCCTACGTGTCTGGTCATGATGAAGAATCCAGGCCTGTTGTGATTTTCCGGTTCAAACAAGACTACCAAAAGCTGCATTCCCAGAAACTGTTCACTAGGTTATTGGTATTCACGCTGGAGGTGGCCATTCAGACGATGACCAAAAACGTCGAGCAGTTTGTTCTTCTCTTCGACGCAAGCTTTTTCAGGTCAGCGTCGGCTTTTATGAACCTGCTTCTGCCAACCATGAAAATTGTGGCAGAGTACTACCCAGGACGGCTCTTCAAGGCGTTTGTCATTGACCCTCCGTCTCTCTTCTCCTATCTCTGGAAGGGCGTTCGACCGTTCGTTGAGCTATCAACGGCTACGTTCATGGTTTCCTCCCTAGACTTCGAAGAGTCGATGGATTTCGACGACTTCTCCTCCTATCCTCGCGCCTCGTCCCTCCGATTCGACCCCTCATCAACGGCCAAGATCGGCTCCTGCTCCTCCTCCCGCTTCTCCTTCACCGTCTCCCACCACCAGATCGACTCCCTCAAGCCGTGGTACCTCAGCCTTACCGACACGTCGTCCTCCAAGGTCGGGCCCACCACCCCCTCCCATCTGGGACCCGCCCTCATCTCCCCACTCAACGCCAGGTCGTTCTCCTTCGCCTCCCCCGCCGCAAGGACGCCACGTGGCACCCTCCACGGCTACGGCAACTCCGCCGCCACCCGGAAGAGCCTGTTCCCGTCGACCCCGCTCCCACCGCGCTGCCGCCCCATGACGTCGTCATCCAGCGACGGCAGCAGGACCCCCCATCCTCCCCGTCCGCCGCGGACCCCACGGCCGTCGTTCTTCCAGTCCCCGGCGACGTTCTTCCGCAAGGAGTGCCACGTCAGCCGGACGGAGAAGTCGCGCGAGTCGTTCGTCCCGTTCCTCAAGTTCTACCGGCGGCCGTACGACGAGATGATATACCGGTCGAAAATGCGGCCACCGCTCGGCGGGCTAGTCTCCATTGTCTCCCCCCACCTCAGACGCCGCCACGTGTCCATGTCCCAGCGGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

435

Amino Acids

49.33

Weight (kDa)

10.01

Isoelectric Point (pI)

54.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	91 - 207	1.6e-20	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1150
AatII	GACGTC	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	498
Acc65I	GGTACC	1 cut(s)	804
AccB1I	GGYRCC	2 cut(s)	804, 938
AccBSI	CCGCTC	2 cut(s)	1000, 1237
AccI	GTMKAC	1 cut(s)	992
AccII	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	6 cut(s)	183, 402, 726, 1085, 1193, 1229
AcvI	CACGTG	2 cut(s)	935, 1285
AcyI	GRCGYC	3 cut(s)	929, 1025, 1276
AfaI	GTAC	4 cut(s)	524, 806, 1199, 1304
AfiI	CCNNNNNNNGG	8 cut(s)	103, 585, 840, 924, 972, 1105, 1238, 1241
AflIII	ACRYGT	3 cut(s)	285, 822, 1284
AgeI	ACCGGT	1 cut(s)	1215
AgsI	TTSAA	2 cut(s)	334, 544
AhdI	GACNNNNNGTC	2 cut(s)	565, 826
AjiI	CACGTC	2 cut(s)	825, 1135
AjnI	CCWGG	4 cut(s)	209, 308, 529, 893
AluBI	AGCT	4 cut(s)	200, 352, 459, 613
AluI	AGCT	4 cut(s)	200, 352, 459, 613
Alw26I	GTCTC	5 cut(s)	42, 573, 775, 1255, 1264
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	8 cut(s)	183, 311, 402, 726, 842, 1085, 1193, 1229
ApaI	GGGCCC	1 cut(s)	846
ApeKI	GCWGC	3 cut(s)	352, 1011, 1044
AsiGI	ACCGGT	1 cut(s)	1215
Asp700I	GAANNNNTTC	2 cut(s)	69, 368
Asp718I	GGTACC	1 cut(s)	804
AspLEI	GCGC	3 cut(s)	695, 1011, 1158
AspS9I	GGNCC	5 cut(s)	842, 843, 866, 1050, 1077
AsuC2I	CCSGG	2 cut(s)	973, 1106
AsuHPI	GGTGA	2 cut(s)	68, 757
AsuII	TTCGAA	1 cut(s)	651
AvaII	GGWCC	3 cut(s)	866, 1050, 1077
BaeGI	GKGCMC	1 cut(s)	846
BalI	TGGCCA	1 cut(s)	404
BanI	GGYRCC	2 cut(s)	804, 938
BanII	GRGCYC	1 cut(s)	846
BbrPI	CACGTG	2 cut(s)	935, 1285
BbvCI	CCTCAGC	1 cut(s)	809
BbvI	GCAGC	3 cut(s)	339, 998, 1056
BccI	CCATC	3 cut(s)	655, 867, 1065
BciT130I	CCWGG	4 cut(s)	211, 310, 531, 895
BcnI	CCSGG	2 cut(s)	973, 1106
BcoDI	GTCTC	5 cut(s)	42, 573, 775, 1255, 1264
BfaI	CTAG	3 cut(s)	375, 644, 1247
BfuAI	ACCTGC	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	524
Bme1390I	CCNGG	6 cut(s)	211, 310, 531, 895, 973, 1106
Bme18I	GGWCC	3 cut(s)	866, 1050, 1077
BmeRI	GACNNNNNGTC	2 cut(s)	565, 826
BmgBI	CACGTC	2 cut(s)	825, 1135
BmgT120I	GGNCC	5 cut(s)	842, 843, 866, 1050, 1077
BmiI	GGNNCC	8 cut(s)	739, 806, 844, 867, 868, 940, 1052, 1079
BmrFI	CCNGG	6 cut(s)	211, 310, 531, 895, 973, 1106
BpmI	CTGGAG	2 cut(s)	232, 416
Bpu10I	CCTNAGC	1 cut(s)	809
Bpu14I	TTCGAA	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	779, 1163
BpuMI	CCSGG	2 cut(s)	973, 1106
BsaAI	YACGTR	3 cut(s)	286, 935, 1285
BsaHI	GRCGYC	3 cut(s)	929, 1025, 1276
BsaJI	CCNNGG	8 cut(s)	186, 529, 800, 834, 946, 1073, 1082, 1104
BsaWI	WCCGGW	2 cut(s)	327, 1215
BsaXI	ACNNNNNCTCC	6 cut(s)	662, 665, 692, 695, 944, 974
Bsc4I	CCNNNNNNNGG	8 cut(s)	103, 585, 840, 924, 972, 1105, 1238, 1241
Bse118I	RCCGGY	2 cut(s)	1188, 1215
Bse1I	ACTGG	1 cut(s)	1099
BseBI	CCWGG	4 cut(s)	211, 310, 531, 895
BseDI	CCNNGG	8 cut(s)	186, 529, 800, 834, 946, 1073, 1082, 1104
BseGI	GGATG	2 cut(s)	1031, 1057
BseLI	CCNNNNNNNGG	8 cut(s)	103, 585, 840, 924, 972, 1105, 1238, 1241
BseMII	CTCAG	4 cut(s)	97, 208, 823, 1285
BseNI	ACTGG	1 cut(s)	1099
BseRI	GAGGAG	3 cut(s)	670, 736, 739
BseSI	GKGCMC	1 cut(s)	846
BseX3I	CGGCCG	2 cut(s)	1085, 1193
BseXI	GCAGC	3 cut(s)	339, 998, 1056
BseYI	CCCAGC	1 cut(s)	1296
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
Bsh1285I	CGRYCG	4 cut(s)	602, 1088, 1196, 1220
BshFI	GGCC	8 cut(s)	185, 313, 404, 728, 844, 1087, 1195, 1231
BshNI	GGYRCC	2 cut(s)	804, 938
BshTI	ACCGGT	1 cut(s)	1215
BsiEI	CGRYCG	4 cut(s)	602, 1088, 1196, 1220
BsiSI	CCGG	6 cut(s)	328, 973, 1106, 1141, 1189, 1216
BsiWI	CGTACG	1 cut(s)	1197
BslFI	GGGAC	6 cut(s)	241, 685, 879, 1087, 1154, 1279
BslI	CCNNNNNNNGG	8 cut(s)	103, 585, 840, 924, 972, 1105, 1238, 1241
BsmAI	GTCTC	5 cut(s)	42, 573, 775, 1255, 1264
BsmBI	CGTCTC	2 cut(s)	573, 775
BsmFI	GGGAC	6 cut(s)	241, 685, 879, 1087, 1154, 1279
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	8 cut(s)	185, 313, 404, 728, 844, 1087, 1195, 1231
Bsp119I	TTCGAA	1 cut(s)	651
Bsp120I	GGGCCC	1 cut(s)	842
Bsp1286I	GDGCHC	1 cut(s)	846
Bsp143I	GATC	4 cut(s)	13, 37, 732, 783
BspANI	GGCC	8 cut(s)	185, 313, 404, 728, 844, 1087, 1195, 1231
BspCNI	CTCAG	4 cut(s)	96, 207, 822, 1284
BspFNI	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
BspHI	TCATGA	2 cut(s)	42, 295
BspLI	GGNNCC	8 cut(s)	739, 806, 844, 867, 868, 940, 1052, 1079
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	45
BspQI	GCTCTTC	2 cut(s)	545, 971
BspT104I	TTCGAA	1 cut(s)	651
BspT107I	GGYRCC	2 cut(s)	804, 938
BsrBI	CCGCTC	2 cut(s)	1000, 1237
BsrFI	RCCGGY	2 cut(s)	1188, 1215
BsrI	ACTGG	1 cut(s)	1099
BssAI	RCCGGY	2 cut(s)	1188, 1215
BssECI	CCNNGG	8 cut(s)	186, 529, 800, 834, 946, 1073, 1082, 1104
BssMI	GATC	4 cut(s)	13, 37, 732, 783
BssNI	GRCGYC	3 cut(s)	929, 1025, 1276
BssT1I	CCWWGG	2 cut(s)	186, 834
Bst2UI	CCWGG	4 cut(s)	211, 310, 531, 895
Bst4CI	ACNGT	5 cut(s)	106, 131, 369, 603, 769
Bst6I	CTCTTC	5 cut(s)	452, 545, 578, 648, 971
BstACI	GRCGYC	3 cut(s)	929, 1025, 1276
BstAPI	GCANNNNNTGC	1 cut(s)	1128
BstBAI	YACGTR	3 cut(s)	286, 935, 1285
BstBI	TTCGAA	1 cut(s)	651
BstC8I	GCNNGC	3 cut(s)	202, 457, 1244
BstDEI	CTNAG	4 cut(s)	83, 194, 809, 1271
BstDSI	CCRYGG	4 cut(s)	800, 946, 1073, 1082
BstF5I	GGATG	2 cut(s)	1031, 1057
BstFNI	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
BstHHI	GCGC	3 cut(s)	695, 1011, 1158
BstKTI	GATC	4 cut(s)	16, 40, 735, 786
BstMAI	GTCTC	5 cut(s)	42, 573, 775, 1255, 1264
BstMBI	GATC	4 cut(s)	13, 37, 732, 783
BstMCI	CGRYCG	4 cut(s)	602, 1088, 1196, 1220
BstMWI	GCNNNNNNNGC	9 cut(s)	197, 266, 917, 1006, 1044, 1128, 1137, 1234, 1243
BstNI	CCWGG	4 cut(s)	211, 310, 531, 895
BstSCI	CCNGG	6 cut(s)	209, 308, 529, 893, 971, 1104
BstSLI	GKGCMC	1 cut(s)	846
BstUI	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
BstV1I	GCAGC	3 cut(s)	339, 998, 1056
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BstZI	CGGCCG	2 cut(s)	1085, 1193
BsuRI	GGCC	8 cut(s)	185, 313, 404, 728, 844, 1087, 1195, 1231
BtgI	CCRYGG	4 cut(s)	800, 946, 1073, 1082
BtrI	CACGTC	2 cut(s)	825, 1135
BtsCI	GGATG	2 cut(s)	1031, 1057
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	3 cut(s)	202, 457, 1244
CaiI	CAGNNNCTG	1 cut(s)	367
CciI	TCATGA	2 cut(s)	42, 295
CfoI	GCGC	3 cut(s)	695, 1011, 1158
Cfr10I	RCCGGY	2 cut(s)	1188, 1215
Cfr13I	GGNCC	5 cut(s)	842, 843, 866, 1050, 1077
Cfr42I	CCGCGG	1 cut(s)	1076
CseI	GACGC	4 cut(s)	461, 462, 937, 1284
Csp6I	GTAC	4 cut(s)	523, 805, 1198, 1303
CspAI	ACCGGT	1 cut(s)	1215
CviAII	CATG	6 cut(s)	43, 296, 505, 631, 1021, 1291
CviQI	GTAC	4 cut(s)	523, 805, 1198, 1303
DdeI	CTNAG	4 cut(s)	83, 194, 809, 1271
DpnI	GATC	4 cut(s)	15, 39, 734, 785
DpnII	GATC	4 cut(s)	13, 37, 732, 783
DrdI	GACNNNNNNGTC	1 cut(s)	1150
DriI	GACNNNNNGTC	2 cut(s)	565, 826
DseDI	GACNNNNNNGTC	1 cut(s)	1150
EaeI	YGGCCR	6 cut(s)	183, 402, 726, 1085, 1193, 1229
EagI	CGGCCG	2 cut(s)	1085, 1193
Eam1104I	CTCTTC	5 cut(s)	452, 545, 578, 648, 971
Eam1105I	GACNNNNNGTC	2 cut(s)	565, 826
EarI	CTCTTC	5 cut(s)	452, 545, 578, 648, 971
EciI	GGCGGA	2 cut(s)	952, 1059
EclXI	CGGCCG	2 cut(s)	1085, 1193
Eco130I	CCWWGG	2 cut(s)	186, 834
Eco147I	AGGCCT	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	846
Eco47I	GGWCC	3 cut(s)	866, 1050, 1077
Eco52I	CGGCCG	2 cut(s)	1085, 1193
Eco72I	CACGTG	2 cut(s)	935, 1285
EcoO109I	RGGNCCY	2 cut(s)	866, 1050
EcoRII	CCWGG	4 cut(s)	209, 308, 529, 893
EcoT14I	CCWWGG	2 cut(s)	186, 834
EcoT38I	GRGCYC	1 cut(s)	846
ErhI	CCWWGG	2 cut(s)	186, 834
Esp3I	CGTCTC	2 cut(s)	573, 775
FaeI	CATG	6 cut(s)	46, 299, 508, 634, 1024, 1294
FaiI	YATR	8 cut(s)	44, 297, 485, 506, 632, 1022, 1213, 1292
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	6 cut(s)	241, 685, 879, 1087, 1154, 1279
FatI	CATG	6 cut(s)	42, 295, 504, 630, 1020, 1290
FauI	CCCGC	6 cut(s)	105, 761, 877, 925, 1005, 1235
FblI	GTMKAC	1 cut(s)	992
FokI	GGATG	2 cut(s)	1018, 1044
FriOI	GRGCYC	1 cut(s)	846
FspBI	CTAG	3 cut(s)	375, 644, 1247
GlaI	GCGC	3 cut(s)	694, 1010, 1157
GsaI	CCCAGC	1 cut(s)	1300
GsuI	CTGGAG	2 cut(s)	232, 416
HaeIII	GGCC	8 cut(s)	185, 313, 404, 728, 844, 1087, 1195, 1231
HapII	CCGG	6 cut(s)	328, 973, 1106, 1141, 1189, 1216
HgaI	GACGC	4 cut(s)	461, 462, 937, 1284
HhaI	GCGC	3 cut(s)	695, 1011, 1158
Hin1I	GRCGYC	3 cut(s)	929, 1025, 1276
Hin1II	CATG	6 cut(s)	46, 299, 508, 634, 1024, 1294
Hin6I	GCGC	3 cut(s)	693, 1009, 1156
HinP1I	GCGC	3 cut(s)	693, 1009, 1156
HincII	GTYRAC	1 cut(s)	993
HindII	GTYRAC	1 cut(s)	993
HindIII	AAGCTT	1 cut(s)	457
HinfI	GANTC	5 cut(s)	305, 656, 708, 788, 1160
HpaII	CCGG	6 cut(s)	328, 973, 1106, 1141, 1189, 1216
HphI	GGTGA	2 cut(s)	68, 757
Hpy166II	GTNNAC	2 cut(s)	372, 993
Hpy188I	TCNGA	6 cut(s)	86, 153, 197, 411, 707, 1274
Hpy188III	TCNNGA	3 cut(s)	43, 296, 586
Hpy8I	GTNNAC	2 cut(s)	372, 993
HpyAV	CCTTC	5 cut(s)	89, 266, 583, 772, 916
HpyCH4III	ACNGT	5 cut(s)	106, 131, 369, 603, 769
HpyCH4IV	ACGT	9 cut(s)	285, 426, 626, 824, 934, 1025, 1112, 1134, 1284
HpyCH4V	TGCA	3 cut(s)	142, 269, 355
HpyF10VI	GCNNNNNNNGC	9 cut(s)	197, 266, 917, 1006, 1044, 1128, 1137, 1234, 1243
HpyF3I	CTNAG	4 cut(s)	83, 194, 809, 1271
HpySE526I	ACGT	9 cut(s)	285, 426, 626, 824, 934, 1025, 1112, 1134, 1284
Hsp92I	GRCGYC	3 cut(s)	929, 1025, 1276
Hsp92II	CATG	6 cut(s)	46, 299, 508, 634, 1024, 1294
HspAI	GCGC	3 cut(s)	693, 1009, 1156
KflI	GGGWCCC	1 cut(s)	866
KpnI	GGTACC	1 cut(s)	808
KspI	CCGCGG	1 cut(s)	1076
Kzo9I	GATC	4 cut(s)	13, 37, 732, 783
LguI	GCTCTTC	2 cut(s)	545, 971
LmnI	GCTCC	3 cut(s)	743, 749, 1005
Lsp1109I	GCAGC	3 cut(s)	339, 998, 1056
MaeI	CTAG	3 cut(s)	375, 644, 1247
MaeII	ACGT	9 cut(s)	285, 426, 626, 824, 934, 1025, 1112, 1134, 1284
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	4 cut(s)	15, 39, 734, 785
MbiI	CCGCTC	2 cut(s)	1000, 1237
MboI	GATC	4 cut(s)	13, 37, 732, 783
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	846
MlsI	TGGCCA	1 cut(s)	404
MluCI	AATT	1 cut(s)	510
MluNI	TGGCCA	1 cut(s)	404
MlyI	GAGTC	3 cut(s)	665, 782, 1169
Mox20I	TGGCCA	1 cut(s)	404
MroXI	GAANNNNTTC	2 cut(s)	69, 368
MscI	TGGCCA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	404
MspA1I	CMGCKG	3 cut(s)	100, 1075, 1300
MspI	CCGG	6 cut(s)	328, 973, 1106, 1141, 1189, 1216
MspR9I	CCNGG	6 cut(s)	211, 310, 531, 895, 973, 1106
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	4 cut(s)	211, 310, 531, 895
MvnI	CGCG	5 cut(s)	693, 1009, 1075, 1156, 1158
MwoI	GCNNNNNNNGC	9 cut(s)	197, 266, 917, 1006, 1044, 1128, 1137, 1234, 1243
NciI	CCSGG	2 cut(s)	973, 1106
NdeII	GATC	4 cut(s)	13, 37, 732, 783
NlaIII	CATG	6 cut(s)	46, 299, 508, 634, 1024, 1294
NlaIV	GGNNCC	8 cut(s)	739, 806, 844, 867, 868, 940, 1052, 1079
NmeAIII	GCCGAG	1 cut(s)	1218
NspV	TTCGAA	1 cut(s)	651
PagI	TCATGA	2 cut(s)	42, 295
PceI	AGGCCT	1 cut(s)	313
PciSI	GCTCTTC	2 cut(s)	545, 971
PcsI	WCGNNNNNNNCGW	2 cut(s)	1160, 1169
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	69, 368
PfeI	GAWTC	2 cut(s)	305, 708
Pfl23II	CGTACG	1 cut(s)	1197
PflFI	GACNNNGTC	1 cut(s)	1027
PfoI	TCCNGGA	1 cut(s)	209
PinAI	ACCGGT	1 cut(s)	1215
PleI	GAGTC	3 cut(s)	664, 782, 1168
PmaCI	CACGTG	2 cut(s)	935, 1285
PmlI	CACGTG	2 cut(s)	935, 1285
PpsI	GAGTC	3 cut(s)	664, 782, 1168
Ppu21I	YACGTR	3 cut(s)	286, 935, 1285
PpuMI	RGGWCCY	2 cut(s)	866, 1050
Psp5II	RGGWCCY	2 cut(s)	866, 1050
Psp6I	CCWGG	4 cut(s)	209, 308, 529, 893
PspCI	CACGTG	2 cut(s)	935, 1285
PspFI	CCCAGC	1 cut(s)	1296
PspGI	CCWGG	4 cut(s)	209, 308, 529, 893
PspLI	CGTACG	1 cut(s)	1197
PspN4I	GGNNCC	8 cut(s)	739, 806, 844, 867, 868, 940, 1052, 1079
PspOMI	GGGCCC	1 cut(s)	842
PspPI	GGNCC	5 cut(s)	842, 843, 866, 1050, 1077
PspPPI	RGGWCCY	2 cut(s)	866, 1050
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	37
PsyI	GACNNNGTC	1 cut(s)	1027
RsaI	GTAC	4 cut(s)	524, 806, 1199, 1304
RsaNI	GTAC	4 cut(s)	523, 805, 1198, 1303
SacII	CCGCGG	1 cut(s)	1076
SalI	GTCGAC	1 cut(s)	991
SapI	GCTCTTC	2 cut(s)	545, 971
Sau3AI	GATC	4 cut(s)	13, 37, 732, 783
Sau96I	GGNCC	5 cut(s)	842, 843, 866, 1050, 1077
ScaI	AGTACT	1 cut(s)	524
SchI	GAGTC	3 cut(s)	665, 782, 1169
ScrFI	CCNGG	6 cut(s)	211, 310, 531, 895, 973, 1106
SduI	GDGCHC	1 cut(s)	846
Sfr303I	CCGCGG	1 cut(s)	1076
SfuI	TTCGAA	1 cut(s)	651
SgrBI	CCGCGG	1 cut(s)	1076
SinI	GGWCC	3 cut(s)	866, 1050, 1077
SmlI	CTYRAG	2 cut(s)	794, 1178
SmoI	CTYRAG	2 cut(s)	794, 1178
Sse9I	AATT	1 cut(s)	510
SseBI	AGGCCT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	375, 644, 1247
StuI	AGGCCT	1 cut(s)	313
StyD4I	CCNGG	6 cut(s)	209, 308, 529, 893, 971, 1104
StyI	CCWWGG	2 cut(s)	186, 834
TaaI	ACNGT	5 cut(s)	106, 131, 369, 603, 769
TaiI	ACGT	9 cut(s)	288, 429, 629, 827, 937, 1028, 1115, 1137, 1287
TasI	AATT	1 cut(s)	510
TatI	WGTACW	1 cut(s)	522
TauI	GCSGC	7 cut(s)	923, 968, 1017, 1075, 1195, 1231, 1281
TfiI	GAWTC	2 cut(s)	305, 708
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	3 cut(s)	352, 1011, 1044
TspDTI	ATGAA	4 cut(s)	315, 500, 521, 619
TspGWI	ACGGA	2 cut(s)	555, 1160
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	1027
VpaK11BI	GGWCC	3 cut(s)	866, 1050, 1077
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	992
XmnI	GAANNNNTTC	2 cut(s)	69, 368
XspI	CTAG	3 cut(s)	375, 644, 1247
ZraI	GACGTC	1 cut(s)	1026
ZrmI	AGTACT	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.