Rmu_sc0000953.1_g000029

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000953.1
Physical Location & Seq
Forward (+)
144632 .. 145639
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000953.1_g000029.1.cds

Sequence Viewer

Length: 708 bp
atggctggagcaaatacttcccagatacattggggtgtacatgctgttttcagactgtttttgctggatcagaataccggcaactacttagtttttcaggaacaaaaggagaggcactttcatgcaatgaagcttgattggggtttcgatcagtttctctccgtcaaagcttttaatgaagcttccaatggatttctcatggatgatacctgtgtgtttggggcagaggtctttgtttctaaggaaagaagcatgggcaaaggagagtgtctatctatggtgaaggacgctgttatgtacaaacatgtttggaagattgacagcttctcaaagataaacacagactgccatgactccaaaactttcagttctggagaccaaaactggaagatacaactctatcccaagggtaaaggcattggaacgggtagtcatctttccctttatttggcattggctgatcctacttctctacctcgtgatactaaaatatatacagagtttaccctgcgcatccttgaacagacgcatcaaaggcatcagcatggtaaagctagcttctggtttagtgcttcagatccagaaaggggttggcagaaattcattacactaggctttctcagtcagacaaccatggggtttctgttgaaggatacatgcattgtggaggcagaggtcaccgtccatggaatttctaaagcactatag

Protein Analysis

235

Amino Acids

26.69

Weight (kDa)

7.17

Isoelectric Point (pI)

15.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 512
AclWI GGATC 3 cut(s) 75, 455, 572
AcsI RAATTY 2 cut(s) 599, 690
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 2 cut(s) 39, 299
AfiI CCNNNNNNNGG 2 cut(s) 448, 587
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 521, 649
AluBI AGCT 6 cut(s) 133, 170, 182, 324, 554, 558
AluI AGCT 6 cut(s) 133, 170, 182, 324, 554, 558
Alw26I GTCTC 1 cut(s) 369
AlwI GGATC 3 cut(s) 75, 455, 572
ApoI RAATTY 2 cut(s) 599, 690
AspLEI GCGC 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 292, 670
AsuNHI GCTAGC 1 cut(s) 554
BaeI ACNNNNGTAYC 2 cut(s) 198, 231
BauI CACGAG 1 cut(s) 477
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 369
BfaI CTAG 2 cut(s) 555, 611
BfmI CTRYAG 1 cut(s) 704
BfuI GTATCC 1 cut(s) 646
BmsI GCATC 3 cut(s) 522, 538, 547
BmtI GCTAGC 1 cut(s) 558
BpmI CTGGAG 2 cut(s) 27, 393
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 405, 633, 685
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 587
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 3 cut(s) 405, 633, 685
BseGI GGATG 2 cut(s) 208, 513
BseLI CCNNNNNNNGG 2 cut(s) 448, 587
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 634
BseNI ACTGG 1 cut(s) 389
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 2 cut(s) 448, 587
BsmAI GTCTC 1 cut(s) 369
Bso31I GGTCTC 1 cut(s) 369
Bsp1407I TGTACA 2 cut(s) 37, 297
Bsp143I GATC 4 cut(s) 67, 148, 460, 577
Bsp19I CCATGG 2 cut(s) 633, 685
BspCNI CTCAG 1 cut(s) 633
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 3 cut(s) 75, 455, 572
BspTNI GGTCTC 1 cut(s) 369
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 77
BsrGI TGTACA 2 cut(s) 37, 297
BsrI ACTGG 1 cut(s) 389
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 405, 633, 685
BssMI GATC 4 cut(s) 67, 148, 460, 577
BssSI CACGAG 1 cut(s) 477
BssT1I CCWWGG 3 cut(s) 405, 633, 685
Bst2BI CACGAG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 57, 682
BstAUI TGTACA 2 cut(s) 37, 297
BstC8I GCNNGC 1 cut(s) 556
BstDEI CTNAG 3 cut(s) 88, 240, 620
BstDSI CCRYGG 2 cut(s) 633, 685
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 2 cut(s) 208, 513
BstHHI GCGC 1 cut(s) 513
BstKTI GATC 4 cut(s) 70, 151, 463, 580
BstMAI GTCTC 1 cut(s) 369
BstMBI GATC 4 cut(s) 67, 148, 460, 577
BstMWI GCNNNNNNNGC 1 cut(s) 535
BstNSI RCATGY 3 cut(s) 44, 308, 660
BstPI GGTNACC 1 cut(s) 676
BstSFI CTRYAG 1 cut(s) 704
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
BsuI GTATCC 1 cut(s) 646
BtgI CCRYGG 2 cut(s) 633, 685
BtsCI GGATG 2 cut(s) 208, 513
Cac8I GCNNGC 1 cut(s) 556
CfoI GCGC 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 77
CseI GACGC 2 cut(s) 296, 535
Csp6I GTAC 2 cut(s) 38, 298
CviJI RGCY 9 cut(s) 5, 133, 170, 182, 324, 458, 554, 558, 615
CviKI_1 RGCY 9 cut(s) 5, 133, 170, 182, 324, 458, 554, 558, 615
CviQI GTAC 2 cut(s) 38, 298
DdeI CTNAG 3 cut(s) 88, 240, 620
DpnI GATC 4 cut(s) 69, 150, 462, 579
DpnII GATC 4 cut(s) 67, 148, 460, 577
Eco130I CCWWGG 3 cut(s) 405, 633, 685
Eco31I GGTCTC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 558
Eco91I GGTNACC 1 cut(s) 676
EcoO65I GGTNACC 1 cut(s) 676
EcoT14I CCWWGG 3 cut(s) 405, 633, 685
EcoT22I ATGCAT 1 cut(s) 662
ErhI CCWWGG 3 cut(s) 405, 633, 685
FokI GGATG 2 cut(s) 215, 500
FspBI CTAG 2 cut(s) 555, 611
FspI TGCGCA 1 cut(s) 512
GlaI GCGC 1 cut(s) 512
GsuI CTGGAG 2 cut(s) 27, 393
HapII CCGG 1 cut(s) 78
HgaI GACGC 2 cut(s) 296, 535
HhaI GCGC 1 cut(s) 513
Hin6I GCGC 1 cut(s) 511
HinP1I GCGC 1 cut(s) 511
HindIII AAGCTT 3 cut(s) 131, 168, 180
HinfI GANTC 1 cut(s) 353
HpaII CCGG 1 cut(s) 78
HphI GGTGA 2 cut(s) 292, 670
Hpy166II GTNNAC 2 cut(s) 38, 504
Hpy188I TCNGA 4 cut(s) 53, 72, 577, 627
Hpy188III TCNNGA 4 cut(s) 98, 372, 479, 581
Hpy8I GTNNAC 2 cut(s) 38, 504
HpyAV CCTTC 2 cut(s) 277, 643
HpyCH4III ACNGT 2 cut(s) 57, 682
HpyCH4V TGCA 2 cut(s) 125, 660
HpyF10VI GCNNNNNNNGC 1 cut(s) 535
HpyF3I CTNAG 3 cut(s) 88, 240, 620
HspAI GCGC 1 cut(s) 511
Kzo9I GATC 4 cut(s) 67, 148, 460, 577
LmnI GCTCC 1 cut(s) 8
LweI GCATC 3 cut(s) 522, 538, 547
MaeI CTAG 2 cut(s) 555, 611
MaeIII GTNAC 1 cut(s) 676
MalI GATC 4 cut(s) 69, 150, 462, 579
MboI GATC 4 cut(s) 67, 148, 460, 577
MboII GAAGA 2 cut(s) 325, 400
MflI RGATCY 1 cut(s) 577
MluCI AATT 2 cut(s) 599, 690
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 5 cut(s) 105, 220, 486, 661, 667
Mph1103I ATGCAT 1 cut(s) 662
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 3 cut(s) 33, 120, 543
MspI CCGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 535
NcoI CCATGG 2 cut(s) 633, 685
NdeII GATC 4 cut(s) 67, 148, 460, 577
NheI GCTAGC 1 cut(s) 554
NmuCI GTSAC 1 cut(s) 676
NsbI TGCGCA 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 662
NspI RCATGY 3 cut(s) 44, 308, 660
PciI ACATGT 1 cut(s) 304
PleI GAGTC 1 cut(s) 347
PpsI GAGTC 1 cut(s) 347
PscI ACATGT 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 676
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 2 cut(s) 39, 299
RsaNI GTAC 2 cut(s) 38, 298
RseI CAYNNNNRTG 3 cut(s) 33, 120, 543
SaqAI TTAA 1 cut(s) 174
Sau3AI GATC 4 cut(s) 67, 148, 460, 577
SchI GAGTC 1 cut(s) 347
SfaNI GCATC 3 cut(s) 522, 538, 547
SfcI CTRYAG 1 cut(s) 704
SmiMI CAYNNNNRTG 3 cut(s) 33, 120, 543
Sse9I AATT 2 cut(s) 599, 690
SspMI CTAG 2 cut(s) 555, 611
StyI CCWWGG 3 cut(s) 405, 633, 685
TaaI ACNGT 2 cut(s) 57, 682
TaqI TCGA 1 cut(s) 147
TasI AATT 2 cut(s) 599, 690
TatI WGTACW 2 cut(s) 37, 297
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TseFI GTSAC 1 cut(s) 676
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 4 cut(s) 110, 143, 192, 592
TspGWI ACGGA 1 cut(s) 151
XapI RAATTY 2 cut(s) 599, 690
XceI RCATGY 3 cut(s) 44, 308, 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 588
XspI CTAG 2 cut(s) 555, 611
Zsp2I ATGCAT 1 cut(s) 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.