Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

53204184 .. 53205288

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39702

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTATCCTTAACTCGGACCAAGATGGCGTTTTCAGATCACTTTCAGATTCACTCCCAACTCACTGCACTCTAAATATAGAGTCGTTTTCGTTGATAGCTGAATATCATGGAGTCAGTGGATATGAATCAAAAGAGTTCGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGGTACGTACTGTATTTACCCTAGCAAATATATTGATTTACATAAACGTTTTGATTTCATATGCAGACTAGCTAGCTACATATATTGCCTGTCTTCTGATATTCTTTTTCCTTTTTCACATTGTGTGCATTGTTCAGATGCTTTTACAAAGCAGAAGTGCTTTCACGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATCCGTCTTGAAGAATTTACTGATGTTTCCAATGGATATCTCATCGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACTGGCCAGGCAGAGTGTATATCAAGGATAAAGAGCCCTTGTATGTACAAGCATGTTTGGAAACTTGAAAAATTTTCAAAGTTGAACGCTCAGTTCTACCACTCAAAACAATTCAGTGCTGAAGGACTAAACTGGTATCTCCAATTATCCTTCTTTTTTTCTTTTGACAGAAAATCGACTATAGGGGAAATTAAGGAACAGCCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

277

Amino Acids

31.93

Weight (kDa)

6.55

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 104	8.2e-20	MATH domain
MATH	PF00917	40 - 104	9.7e-07	MATH domain
MATH_2	PF22486	153 - 201	9.2e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	222
AclI	AACGTT	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	628
AcsI	RAATTY	2 cut(s)	542, 695
AcuI	CTGAAG	2 cut(s)	236, 765
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	5 cut(s)	176, 317, 334, 338, 671
AfiI	CCNNNNNNNGG	1 cut(s)	16
AgsI	TTSAA	5 cut(s)	329, 539, 692, 702, 709
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	5 cut(s)	101, 401, 405, 526, 596
AluI	AGCT	5 cut(s)	101, 401, 405, 526, 596
AoxI	GGCC	1 cut(s)	628
ApoI	RAATTY	2 cut(s)	542, 695
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	19
AsuII	TTCGAA	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	630
BanII	GRGCYC	1 cut(s)	662
BbsI	GAAGAC	2 cut(s)	213, 414
BbvCI	CCTCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	632
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	3 cut(s)	351, 398, 402
BfmI	CTRYAG	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	632
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	632
BmsI	GCATC	1 cut(s)	457
BmtI	GCTAGC	1 cut(s)	405
BpiI	GAAGAC	2 cut(s)	213, 414
Bpu10I	CCTNAGC	1 cut(s)	597
Bpu14I	TTCGAA	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	573
BsaAI	YACGTR	1 cut(s)	336
BsaBI	GATNNNNATC	1 cut(s)	127
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 585, 615
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse1I	ACTGG	4 cut(s)	171, 262, 631, 761
Bse8I	GATNNNNATC	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	632
BseCI	ATCGAT	1 cut(s)	573
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	2 cut(s)	588, 728
BseNI	ACTGG	4 cut(s)	171, 262, 631, 761
BsgI	GTGCAG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	630
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	662
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	2 cut(s)	38, 298
BspANI	GGCC	1 cut(s)	630
BspCNI	CTCAG	2 cut(s)	589, 727
BspDI	ATCGAT	1 cut(s)	573
BspOI	GCTAGC	1 cut(s)	405
BspT104I	TTCGAA	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	4 cut(s)	171, 262, 631, 761
BssMI	GATC	2 cut(s)	38, 298
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	1 cut(s)	341
BstAUI	TGTACA	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	336
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	403
BstDEI	CTNAG	2 cut(s)	597, 714
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	41, 301
BstMBI	GATC	2 cut(s)	38, 298
BstNI	CCWGG	1 cut(s)	632
BstNSI	RCATGY	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	630
BstSFI	CTRYAG	1 cut(s)	804
BstSNI	TACGTA	1 cut(s)	336
BstV2I	GAAGAC	2 cut(s)	213, 414
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	630
BsuTUI	ATCGAT	1 cut(s)	573
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 124, 745
Cac8I	GCNNGC	1 cut(s)	403
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	573
Csp6I	GTAC	5 cut(s)	175, 316, 333, 337, 670
CviAII	CATG	3 cut(s)	110, 509, 677
CviQI	GTAC	5 cut(s)	175, 316, 333, 337, 670
DdeI	CTNAG	2 cut(s)	597, 714
DpnI	GATC	2 cut(s)	40, 300
DpnII	GATC	2 cut(s)	38, 298
DraIII	CACNNNGTG	1 cut(s)	452
EaeI	YGGCCR	1 cut(s)	628
Eco105I	TACGTA	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	662
Eco32I	GATATC	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	236, 765
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	3 cut(s)	113, 512, 680
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	3 cut(s)	109, 508, 676
FauNDI	CATATG	2 cut(s)	158, 389
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	662
FspBI	CTAG	3 cut(s)	351, 398, 402
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	630
HapII	CCGG	2 cut(s)	147, 237
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	113, 512, 680
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	5 cut(s)	50, 83, 114, 128, 245
HpaII	CCGG	2 cut(s)	147, 237
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	7 cut(s)	19, 38, 49, 255, 303, 427, 466
Hpy188III	TCNNGA	2 cut(s)	326, 536
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	323, 740, 784
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	2 cut(s)	335, 376
HpyCH4V	TGCA	4 cut(s)	69, 393, 457, 612
HpyF3I	CTNAG	2 cut(s)	597, 714
HpySE526I	ACGT	2 cut(s)	335, 376
Hsp92II	CATG	3 cut(s)	113, 512, 680
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	38, 298
LmnI	GCTCC	1 cut(s)	593
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	3 cut(s)	351, 398, 402
MaeII	ACGT	2 cut(s)	335, 376
MalI	GATC	2 cut(s)	40, 300
MboI	GATC	2 cut(s)	38, 298
MboII	GAAGA	6 cut(s)	205, 208, 218, 254, 414, 551
MhlI	GDGCHC	1 cut(s)	662
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	5 cut(s)	542, 695, 734, 767, 813
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	92, 123
MnlI	CCTC	2 cut(s)	143, 592
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	2 cut(s)	12, 816
Msp20I	TGGCCA	1 cut(s)	630
MspI	CCGG	2 cut(s)	147, 237
MspR9I	CCNGG	1 cut(s)	632
MvaI	CCWGG	1 cut(s)	632
NdeI	CATATG	2 cut(s)	158, 389
NdeII	GATC	2 cut(s)	38, 298
NheI	GCTAGC	1 cut(s)	401
NlaIII	CATG	3 cut(s)	113, 512, 680
NsbI	TGCGCA	1 cut(s)	230
NspI	RCATGY	1 cut(s)	680
NspV	TTCGAA	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	50, 128, 245
PleI	GAGTC	2 cut(s)	91, 122
PpsI	GAGTC	2 cut(s)	91, 122
Ppu21I	YACGTR	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	376
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	5 cut(s)	176, 317, 334, 338, 671
RsaNI	GTAC	5 cut(s)	175, 316, 333, 337, 670
SaqAI	TTAA	2 cut(s)	12, 816
Sau3AI	GATC	2 cut(s)	38, 298
Sau96I	GGNCC	1 cut(s)	19
SchI	GAGTC	2 cut(s)	92, 123
ScrFI	CCNGG	1 cut(s)	632
SduI	GDGCHC	1 cut(s)	662
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	804
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	19
SnaBI	TACGTA	1 cut(s)	336
Sse9I	AATT	5 cut(s)	542, 695, 734, 767, 813
SspMI	CTAG	3 cut(s)	351, 398, 402
StyD4I	CCNGG	1 cut(s)	630
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	2 cut(s)	338, 379
TaqI	TCGA	3 cut(s)	141, 573, 800
TasI	AATT	5 cut(s)	542, 695, 734, 767, 813
TatI	WGTACW	2 cut(s)	315, 669
TfiI	GAWTC	3 cut(s)	50, 128, 245
Tru1I	TTAA	2 cut(s)	12, 816
Tru9I	TTAA	2 cut(s)	12, 816
TscAI	CASTG	3 cut(s)	71, 124, 745
TspDTI	ATGAA	3 cut(s)	141, 376, 497
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	3 cut(s)	71, 124, 745
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	2 cut(s)	542, 695
XceI	RCATGY	1 cut(s)	680
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	3 cut(s)	351, 398, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.