Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

53199862 .. 53201052

Gene Structure 1191 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTTCCAAGCAAAAGTGCTTTCATTGGGCGATGCACGATGTATGTTTTGATAAACTAATCCCTCTCGAAGAATTTAGGGATGCCTCTAATAAATATCTCGTTGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCGGAGAAAGAAAAACAGGGCAAGCAGAGTGTATATCAAGGATAAAGAGCCCTTGTATGTACAAGCATGTTTGGGAGATTCAAAATTATTCTATGTTAAACGCTCCATGCCACCAATCAGAACCATTCAATGTTGAAGGCCAAGATTGGATTATAGTACTCTATCCCGTGGGAAATCGCGAGGGGAAAGATTCTCATCTTTCTCTCTACTTGGGATTGGCTGATAAACAAACAACGCCTACTGTCACTAGAGTACATGCAGAGTTTTCCTTACGCATAGTAAATCAAAACCGTGCCAGCCATCAATCTGGTCCACGTAAGTTATGTATTAGTGAAGATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

222

Amino Acids

25.48

Weight (kDa)

6.24

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	4 - 106	1.6e-22	MATH domain
MATH	PF00917	4 - 108	8.8e-09	MATH domain
MATH_2	PF22486	130 - 209	1.5e-18	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	72
AccII	CGCG	1 cut(s)	504
AciI	CCGC	1 cut(s)	327
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	5 cut(s)	26, 167, 386, 483, 579
AgsI	TTSAA	4 cut(s)	179, 407, 454, 461
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AoxI	GGCC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	635
AvaII	GGWCC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	377
BbsI	GAAGAC	1 cut(s)	63
BbvCI	CCTCAGC	1 cut(s)	312
BccI	CCATC	2 cut(s)	633, 656
BclI	TGATCA	1 cut(s)	148
BfaI	CTAG	1 cut(s)	573
BmcAI	AGTACT	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmsI	GCATC	3 cut(s)	172, 207, 256
BpiI	GAAGAC	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	492
BsaXI	ACNNNNNCTCC	4 cut(s)	108, 138, 300, 330
Bse1I	ACTGG	2 cut(s)	21, 112
Bse8I	GATNNNNATC	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	21, 112
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	87
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	1 cut(s)	148
Bsp68I	TCGCGA	1 cut(s)	504
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	21, 112
BssECI	CCNNGG	1 cut(s)	492
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	568, 617
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	641
BstC8I	GCNNGC	2 cut(s)	348, 622
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstNSI	RCATGY	2 cut(s)	395, 584
BstUI	CGCG	1 cut(s)	504
BstV2I	GAAGAC	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	632
BsuRI	GGCC	1 cut(s)	465
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	1 cut(s)	230
BtsCI	GGATG	1 cut(s)	271
BtuMI	TCGCGA	1 cut(s)	504
Cac8I	GCNNGC	2 cut(s)	348, 622
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	635
Csp6I	GTAC	5 cut(s)	25, 166, 385, 482, 578
CviAII	CATG	3 cut(s)	392, 432, 581
CviJI	RGCY	6 cut(s)	86, 311, 375, 465, 545, 624
CviKI_1	RGCY	6 cut(s)	86, 311, 375, 465, 545, 624
CviQI	GTAC	5 cut(s)	25, 166, 385, 482, 578
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	635
Eco57I	CTGAAG	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	377
FaeI	CATG	3 cut(s)	395, 435, 584
FalI	AAGNNNNNCTT	2 cut(s)	84, 116
FatI	CATG	3 cut(s)	391, 431, 580
FauNDI	CATATG	1 cut(s)	8
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	72
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	377
FspBI	CTAG	1 cut(s)	573
FspI	TGCGCA	1 cut(s)	80
GlaI	GCGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	395, 435, 584
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	3 cut(s)	95, 403, 515
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	2 cut(s)	73, 638
Hpy188I	TCNGA	3 cut(s)	105, 153, 445
Hpy188III	TCNNGA	3 cut(s)	176, 251, 503
Hpy8I	GTNNAC	2 cut(s)	73, 638
HpyAV	CCTTC	1 cut(s)	455
HpyCH4III	ACNGT	2 cut(s)	568, 617
HpyCH4IV	ACGT	1 cut(s)	640
HpyCH4V	TGCA	2 cut(s)	220, 584
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	640
Hsp92II	CATG	3 cut(s)	395, 435, 584
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	2 cut(s)	308, 433
LpnPI	CCDG	6 cut(s)	2, 93, 100, 327, 618, 634
LweI	GCATC	3 cut(s)	172, 207, 256
MaeI	CTAG	1 cut(s)	573
MaeII	ACGT	1 cut(s)	640
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	6 cut(s)	55, 58, 68, 104, 191, 266
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	257, 409
MnlI	CCTC	4 cut(s)	258, 280, 307, 499
MseI	TTAA	1 cut(s)	422
MspI	CCGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	8
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	395, 435, 584
NmuCI	GTSAC	1 cut(s)	568
NruI	TCGCGA	1 cut(s)	504
NsbI	TGCGCA	1 cut(s)	80
NspI	RCATGY	2 cut(s)	395, 584
PfeI	GAWTC	3 cut(s)	95, 403, 515
Ppu21I	YACGTR	1 cut(s)	641
PspPI	GGNCC	1 cut(s)	635
RruI	TCGCGA	1 cut(s)	504
RsaI	GTAC	5 cut(s)	26, 167, 386, 483, 579
RsaNI	GTAC	5 cut(s)	25, 166, 385, 482, 578
SaqAI	TTAA	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	635
ScaI	AGTACT	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	3 cut(s)	313, 318, 643
SfaNI	GCATC	3 cut(s)	172, 207, 256
SinI	GGWCC	1 cut(s)	635
Sse9I	AATT	2 cut(s)	257, 409
SsiI	CCGC	1 cut(s)	327
SspMI	CTAG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	568, 617
TaiI	ACGT	1 cut(s)	643
TaqI	TCGA	1 cut(s)	252
TasI	AATT	2 cut(s)	257, 409
TatI	WGTACW	4 cut(s)	165, 384, 481, 577
TfiI	GAWTC	3 cut(s)	95, 403, 515
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TseFI	GTSAC	1 cut(s)	568
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	2 cut(s)	395, 584
XmiI	GTMKAC	1 cut(s)	72
XspI	CTAG	1 cut(s)	573
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.