Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

49270931 .. 49273193

Gene Structure 2263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGATATGAATCATCACAATTTGAAGCCGGAGGATACAAATGGTAATTACTTTTTTGTCTGTCAAGCCATGTCTACTTCTTTCTCTCTATCTTATTTCTTTTTACATGAACTAGTGATACATTTTGAATTATGTCATTTGGTTTTCACACGCAGGAAACTGGTGTTGTACCCAAATGGAAACATGAGGAGGAATGTGGGAGACCACATCTCTATCTACTTGGTAATAGCTGGAACAGATTCACTTCCAACTGGTTGGGAGGTATATGTTGATTTCAGATTGTTTTTGCTCGATCAGAATAAGAAAGCCTACTCGGTTTTTGAAGATGCTTTTACAAAGCAAAAGTGCTTTAATGGAGCTATGCTTGATGCGGCTGGTTTTGATAAACTTATCCCCATTAAGGATTTTACTGATGTTTCCAATGGATATCTTATTGATGATACATGCGTGTATGGAGCTGAGGTCTTTGTTTGTAAAGAAAGGAGAACAGGGAAAGGAGAGTGTCTATCAAGGATAAGAGATGCCTCCGTGTACAAGCATGTTTGGAAGATTGATAATTTTTCAGAATTGGACGCTGAATCCTATTCATTGGAACCCTTTAATGCTGGAGGCTATGAATGGAAGATAAAGCTCTATCCCAAGGGAACCGGTGATGGAAAGGATAGTCATCTTTCTCTGTTTTTCATATTGGCAAATCCTGAGACCCTTCCTCCTGGCTCTAGTATATTTGCAGATTATACATCGCGCATCCTAGATCAGATTCATGACAGGCATCACTCTAAAAGGGGTAAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

265

Amino Acids

30.41

Weight (kDa)

6.12

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	53 - 155	1.5e-21	MATH domain
MATH	PF00917	67 - 157	1.3e-07	MATH domain
MATH_2	PF22486	179 - 261	5e-21	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	74
AccII	CGCG	1 cut(s)	745
AciI	CCGC	1 cut(s)	371
AfaI	GTAC	2 cut(s)	170, 533
AfiI	CCNNNNNNNGG	1 cut(s)	400
AgeI	ACCGGT	1 cut(s)	647
AgsI	TTSAA	3 cut(s)	25, 128, 323
AhlI	ACTAGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	712
AluBI	AGCT	4 cut(s)	230, 359, 458, 631
AluI	AGCT	4 cut(s)	230, 359, 458, 631
Alw26I	GTCTC	2 cut(s)	195, 695
AsiGI	ACCGGT	1 cut(s)	647
Asp700I	GAANNNNTTC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	747
AsuHPI	GGTGA	1 cut(s)	662
BaeI	ACNNNNGTAYC	2 cut(s)	432, 465
BbvCI	CCTCAGC	1 cut(s)	459
BccI	CCATC	1 cut(s)	647
BciT130I	CCWGG	1 cut(s)	714
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	195, 695
BcuI	ACTAGT	1 cut(s)	112
BfaI	CTAG	3 cut(s)	113, 720, 752
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	714
BmiI	GGNNCC	2 cut(s)	594, 646
BmrFI	CCNGG	1 cut(s)	714
BmsI	GCATC	5 cut(s)	316, 358, 511, 756, 781
BpmI	CTGGAG	1 cut(s)	627
Bpu10I	CCTNAGC	1 cut(s)	459
BsaBI	GATNNNNATC	2 cut(s)	9, 666
BsaI	GGTCTC	2 cut(s)	195, 695
BsaJI	CCNNGG	1 cut(s)	639
BsaWI	WCCGGW	1 cut(s)	647
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 694, 724
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	165, 256
Bse8I	GATNNNNATC	2 cut(s)	9, 666
BseBI	CCWGG	1 cut(s)	714
BseDI	CCNNGG	1 cut(s)	639
BseGI	GGATG	1 cut(s)	747
BseJI	GATNNNNATC	2 cut(s)	9, 666
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	450, 690
BseNI	ACTGG	2 cut(s)	165, 256
BseRI	GAGGAG	1 cut(s)	202
Bsh1236I	CGCG	1 cut(s)	745
BshTI	ACCGGT	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	29, 648
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	2 cut(s)	195, 695
Bso31I	GGTCTC	2 cut(s)	195, 695
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	292, 754
BspACI	CCGC	1 cut(s)	371
BspCNI	CTCAG	2 cut(s)	451, 691
BspFNI	CGCG	1 cut(s)	745
BspHI	TCATGA	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	594, 646
BspTNI	GGTCTC	2 cut(s)	195, 695
BsrFI	RCCGGY	1 cut(s)	647
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	165, 256
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	639
BssMI	GATC	2 cut(s)	292, 754
BssT1I	CCWWGG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	714
BstAUI	TGTACA	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	459, 699
BstF5I	GGATG	1 cut(s)	747
BstFNI	CGCG	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	2 cut(s)	295, 757
BstMAI	GTCTC	2 cut(s)	195, 695
BstMBI	GATC	2 cut(s)	292, 754
BstNI	CCWGG	1 cut(s)	714
BstNSI	RCATGY	2 cut(s)	447, 542
BstSCI	CCNGG	1 cut(s)	712
BstUI	CGCG	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	28
BtgZI	GCGATG	1 cut(s)	726
BtsCI	GGATG	1 cut(s)	747
CciI	TCATGA	1 cut(s)	763
CfoI	GCGC	1 cut(s)	747
Cfr10I	RCCGGY	1 cut(s)	647
CseI	GACGC	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	169, 532
CspAI	ACCGGT	1 cut(s)	647
CviAII	CATG	6 cut(s)	70, 107, 184, 444, 539, 764
CviQI	GTAC	2 cut(s)	169, 532
DdeI	CTNAG	2 cut(s)	459, 699
DpnI	GATC	2 cut(s)	294, 756
DpnII	GATC	2 cut(s)	292, 754
Eco130I	CCWWGG	1 cut(s)	639
Eco31I	GGTCTC	2 cut(s)	195, 695
Eco32I	GATATC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	712
EcoRV	GATATC	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	639
ErhI	CCWWGG	1 cut(s)	639
FaeI	CATG	6 cut(s)	73, 110, 187, 447, 542, 767
FatI	CATG	6 cut(s)	69, 106, 183, 443, 538, 763
FblI	GTMKAC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	1 cut(s)	734
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	3 cut(s)	113, 720, 752
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	627
HapII	CCGG	2 cut(s)	29, 648
HgaI	GACGC	1 cut(s)	581
HhaI	GCGC	1 cut(s)	747
Hin1II	CATG	6 cut(s)	73, 110, 187, 447, 542, 767
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HinfI	GANTC	4 cut(s)	10, 239, 578, 760
HpaII	CCGG	2 cut(s)	29, 648
HphI	GGTGA	1 cut(s)	662
Hpy166II	GTNNAC	2 cut(s)	75, 532
Hpy188I	TCNGA	4 cut(s)	278, 297, 565, 759
Hpy188III	TCNNGA	2 cut(s)	698, 764
Hpy8I	GTNNAC	2 cut(s)	75, 532
HpyAV	CCTTC	1 cut(s)	716
HpyCH4V	TGCA	1 cut(s)	731
HpyF3I	CTNAG	2 cut(s)	459, 699
Hsp92II	CATG	6 cut(s)	73, 110, 187, 447, 542, 767
HspAI	GCGC	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	292, 754
LmnI	GCTCC	2 cut(s)	356, 455
LweI	GCATC	5 cut(s)	316, 358, 511, 756, 781
MaeI	CTAG	3 cut(s)	113, 720, 752
MalI	GATC	2 cut(s)	294, 756
MboI	GATC	2 cut(s)	292, 754
MboII	GAAGA	3 cut(s)	335, 559, 634
MluCI	AATT	5 cut(s)	19, 46, 128, 556, 566
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	8 cut(s)	25, 180, 183, 253, 454, 535, 602, 720
MroXI	GAANNNNTTC	1 cut(s)	238
MseI	TTAA	3 cut(s)	351, 399, 600
MspI	CCGG	2 cut(s)	29, 648
MspR9I	CCNGG	1 cut(s)	714
MvaI	CCWGG	1 cut(s)	714
MvnI	CGCG	1 cut(s)	745
NdeII	GATC	2 cut(s)	292, 754
NlaIII	CATG	6 cut(s)	73, 110, 187, 447, 542, 767
NlaIV	GGNNCC	2 cut(s)	594, 646
NspI	RCATGY	2 cut(s)	447, 542
PagI	TCATGA	1 cut(s)	763
PdmI	GAANNNNTTC	1 cut(s)	238
PfeI	GAWTC	4 cut(s)	10, 239, 578, 760
PinAI	ACCGGT	1 cut(s)	647
PkrI	GCNGC	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	594, 646
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
RsaI	GTAC	2 cut(s)	170, 533
RsaNI	GTAC	2 cut(s)	169, 532
SaqAI	TTAA	3 cut(s)	351, 399, 600
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	292, 754
ScrFI	CCNGG	1 cut(s)	714
SetI	ASST	6 cut(s)	232, 264, 361, 460, 465, 633
SfaNI	GCATC	5 cut(s)	316, 358, 511, 756, 781
SpeI	ACTAGT	1 cut(s)	112
Sse9I	AATT	5 cut(s)	19, 46, 128, 556, 566
SsiI	CCGC	1 cut(s)	371
SspMI	CTAG	3 cut(s)	113, 720, 752
StyD4I	CCNGG	1 cut(s)	712
StyI	CCWWGG	1 cut(s)	639
TaqI	TCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	19, 46, 128, 556, 566
TatI	WGTACW	1 cut(s)	531
TauI	GCSGC	1 cut(s)	374
TfiI	GAWTC	4 cut(s)	10, 239, 578, 760
Tru1I	TTAA	3 cut(s)	351, 399, 600
Tru9I	TTAA	3 cut(s)	351, 399, 600
TspDTI	ATGAA	6 cut(s)	23, 123, 576, 630, 673, 752
TspGWI	ACGGA	1 cut(s)	517
XceI	RCATGY	2 cut(s)	447, 542
XmiI	GTMKAC	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	238
XspI	CTAG	3 cut(s)	113, 720, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.