Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

24366929 .. 24368678

Gene Structure 1750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g21293.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGGAAGCCATGAATGTGACCAAAATGGGGTTCTGAGATCCTATTCAGGTTCACCACCAAGTCATTACAGTCTCAAAGTAGACTCATTTTCATTCATGACTGAAAATACAGTGAATGGTTATGGCGCAGGGGAGTTTGAAGCTGGAGGGCACAAATGGAGACTGGCGATATACCCAAATGGAAACAAGAAAAGAAATGTGGAAGGCCACATCTCTCTCTACTTGGAAATGGCCGGAGGATATTCACTTCAGGGTGATTGGGAGATATATGTTGATTTTAGATTGTTTTTACTTGATCAGAAAAGGGGCAAGTACTTGAATCTTGAAGAGTATTGCTTTCATCGGGAAATGCTGCCCTCGCGTGGTTTTGATAAGCTTATGCCTCTTGAAAAGTTTACTAATGCCTCCAATGGATATGTAGTTGATGACACCTGCGTGTTTGGTGCTGAGGGAGATAAAGTTCTATCCGAAGGAAGTCACCAGGGAATGGGGACTGATATTTCTCTTTACTTGGCATTATCTGATTTGAAACCAACTCCTCCTGTGACCAAAATATTTGCTGAGTTTTGCCTGCGCATTGTAGATCAAAAGCATGCCAATCATCAGAGTGGGTCAGGTAAACAATGTTTCAGTGCCAAGTCTTCCTCTTGGGGTTTTCCTAAATTCATTACTTTAAGCGCTTTCAGCGAAGCGAACAAGGGGTTGATGATCAAGAATACTTGCATTCTGGAGGCTGAGGTCACTGTCCATGGAATTGCTAGAGTACTACAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

259

Amino Acids

28.69

Weight (kDa)

6.31

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 150	6.3e-30	MATH domain
MATH	PF00917	30 - 150	9.7e-13	MATH domain
MATH_2	PF22486	156 - 247	6.1e-14	MATH domain
MATH	PF00917	164 - 249	3.3e-07	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	440
Acc16I	TGCGCA	1 cut(s)	575
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	361
AclWI	GGATC	1 cut(s)	33
AcoI	YGGCCR	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	662
AcuI	CTGAAG	1 cut(s)	233
AfaI	GTAC	2 cut(s)	314, 765
AfeI	AGCGCT	1 cut(s)	679
AfiI	CCNNNNNNNGG	3 cut(s)	28, 362, 487
AgsI	TTSAA	5 cut(s)	140, 319, 326, 389, 529
AjnI	CCWGG	1 cut(s)	480
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
AleI	CACNNNNGTG	1 cut(s)	434
AloI	GAACNNNNNNTCC	2 cut(s)	444, 476
AluBI	AGCT	2 cut(s)	143, 376
AluI	AGCT	2 cut(s)	143, 376
Alw26I	GTCTC	2 cut(s)	77, 154
AlwI	GGATC	1 cut(s)	33
Aor51HI	AGCGCT	1 cut(s)	679
AoxI	GGCC	2 cut(s)	205, 231
ApeKI	GCWGC	1 cut(s)	352
ApoI	RAATTY	1 cut(s)	662
AspLEI	GCGC	3 cut(s)	128, 576, 680
AsuHPI	GGTGA	3 cut(s)	45, 266, 470
BaeGI	GKGCMC	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	633
BbvCI	CCTCAGC	2 cut(s)	447, 735
BbvI	GCAGC	1 cut(s)	339
BciT130I	CCWGG	1 cut(s)	482
BclI	TGATCA	2 cut(s)	295, 708
BcoDI	GTCTC	2 cut(s)	77, 154
BfaI	CTAG	1 cut(s)	759
BfmI	CTRYAG	1 cut(s)	767
BfoI	RGCGCY	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	1 cut(s)	353
BlsI	GCNGC	1 cut(s)	354
BmcAI	AGTACT	2 cut(s)	314, 765
Bme1390I	CCNGG	1 cut(s)	482
BmrFI	CCNGG	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	633
BpmI	CTGGAG	2 cut(s)	165, 749
Bpu10I	CCTNAGC	2 cut(s)	447, 735
BsaJI	CCNNGG	2 cut(s)	481, 748
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 362, 487
Bse1I	ACTGG	1 cut(s)	168
BseBI	CCWGG	1 cut(s)	482
BseDI	CCNNGG	2 cut(s)	481, 748
BseLI	CCNNNNNNNGG	3 cut(s)	28, 362, 487
BseMII	CTCAG	4 cut(s)	26, 438, 552, 726
BseNI	ACTGG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	528
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	207, 233
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	3 cut(s)	28, 362, 487
BsmAI	GTCTC	2 cut(s)	77, 154
BsmFI	GGGAC	1 cut(s)	505
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	2 cut(s)	207, 233
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	4 cut(s)	38, 295, 583, 708
Bsp19I	CCATGG	1 cut(s)	748
BspANI	GGCC	2 cut(s)	207, 233
BspCNI	CTCAG	4 cut(s)	27, 439, 553, 727
BspFNI	CGCG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	96
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	481, 748
BssMI	GATC	4 cut(s)	38, 295, 583, 708
BssT1I	CCWWGG	1 cut(s)	748
Bst2UI	CCWGG	1 cut(s)	482
Bst4CI	ACNGT	3 cut(s)	71, 112, 745
Bst6I	CTCTTC	1 cut(s)	321
BstC8I	GCNNGC	2 cut(s)	572, 594
BstDEI	CTNAG	4 cut(s)	35, 447, 561, 735
BstDSI	CCRYGG	1 cut(s)	748
BstFNI	CGCG	1 cut(s)	361
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	3 cut(s)	128, 576, 680
BstKTI	GATC	4 cut(s)	41, 298, 586, 711
BstMAI	GTCTC	2 cut(s)	77, 154
BstMBI	GATC	4 cut(s)	38, 295, 583, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 684
BstNI	CCWGG	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	480
BstSFI	CTRYAG	1 cut(s)	767
BstSLI	GKGCMC	1 cut(s)	153
BstUI	CGCG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	339
BstV2I	GAAGAC	1 cut(s)	633
BstX2I	RGATCY	1 cut(s)	38
BstYI	RGATCY	1 cut(s)	38
BsuRI	GGCC	2 cut(s)	207, 233
BtgI	CCRYGG	1 cut(s)	748
BtsIMutI	CAGTG	3 cut(s)	117, 637, 741
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	572, 594
CciI	TCATGA	1 cut(s)	96
CfoI	GCGC	3 cut(s)	128, 576, 680
Csp6I	GTAC	2 cut(s)	313, 764
CviAII	CATG	4 cut(s)	11, 97, 593, 749
CviJI	RGCY	7 cut(s)	9, 143, 207, 233, 376, 734, 772
CviKI_1	RGCY	7 cut(s)	9, 143, 207, 233, 376, 734, 772
CviQI	GTAC	2 cut(s)	313, 764
DdeI	CTNAG	4 cut(s)	35, 447, 561, 735
DpnI	GATC	4 cut(s)	40, 297, 585, 710
DpnII	GATC	4 cut(s)	38, 295, 583, 708
EaeI	YGGCCR	1 cut(s)	231
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	748
Eco47III	AGCGCT	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	233
EcoRII	CCWGG	1 cut(s)	480
EcoT14I	CCWWGG	1 cut(s)	748
ErhI	CCWWGG	1 cut(s)	748
FaeI	CATG	4 cut(s)	14, 100, 596, 752
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	4 cut(s)	10, 96, 592, 748
FbaI	TGATCA	2 cut(s)	295, 708
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	353
FspBI	CTAG	1 cut(s)	759
FspI	TGCGCA	1 cut(s)	575
GlaI	GCGC	3 cut(s)	127, 575, 679
GluI	GCNGC	1 cut(s)	353
GsuI	CTGGAG	2 cut(s)	165, 749
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	2 cut(s)	207, 233
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	3 cut(s)	128, 576, 680
Hin1II	CATG	4 cut(s)	14, 100, 596, 752
Hin6I	GCGC	3 cut(s)	126, 574, 678
HinP1I	GCGC	3 cut(s)	126, 574, 678
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	83, 319
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	45, 266, 470
Hpy166II	GTNNAC	4 cut(s)	53, 82, 396, 620
Hpy188I	TCNGA	5 cut(s)	36, 300, 469, 523, 606
Hpy188III	TCNNGA	6 cut(s)	97, 323, 344, 386, 712, 728
Hpy8I	GTNNAC	4 cut(s)	53, 82, 396, 620
HpyAV	CCTTC	2 cut(s)	197, 464
HpyCH4III	ACNGT	3 cut(s)	71, 112, 745
HpyCH4V	TGCA	1 cut(s)	723
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 684
HpyF3I	CTNAG	4 cut(s)	35, 447, 561, 735
Hsp92II	CATG	4 cut(s)	14, 100, 596, 752
HspAI	GCGC	3 cut(s)	126, 574, 678
Ksp22I	TGATCA	2 cut(s)	295, 708
Kzo9I	GATC	4 cut(s)	38, 295, 583, 708
Lsp1109I	GCAGC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	759
MaeIII	GTNAC	4 cut(s)	17, 476, 544, 739
MalI	GATC	4 cut(s)	40, 297, 585, 710
MboI	GATC	4 cut(s)	38, 295, 583, 708
MboII	GAAGA	2 cut(s)	338, 633
MflI	RGATCY	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	662, 753
MlyI	GAGTC	1 cut(s)	77
MseI	TTAA	2 cut(s)	674, 775
MslI	CAYNNNNRTG	3 cut(s)	15, 434, 606
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	482
MvnI	CGCG	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	358, 684
NcoI	CCATGG	1 cut(s)	748
NdeII	GATC	4 cut(s)	38, 295, 583, 708
NlaIII	CATG	4 cut(s)	14, 100, 596, 752
NmuCI	GTSAC	4 cut(s)	17, 476, 544, 739
NsbI	TGCGCA	1 cut(s)	575
NspI	RCATGY	1 cut(s)	596
OliI	CACNNNNGTG	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	596
PagI	TCATGA	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	440
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	354
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	480
PspGI	CCWGG	1 cut(s)	480
PsuI	RGATCY	1 cut(s)	38
RsaI	GTAC	2 cut(s)	314, 765
RsaNI	GTAC	2 cut(s)	313, 764
RseI	CAYNNNNRTG	3 cut(s)	15, 434, 606
SaqAI	TTAA	2 cut(s)	674, 775
SatI	GCNGC	1 cut(s)	353
Sau3AI	GATC	4 cut(s)	38, 295, 583, 708
ScaI	AGTACT	2 cut(s)	314, 765
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	482
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	6 cut(s)	52, 145, 378, 434, 619, 741
SfcI	CTRYAG	1 cut(s)	767
SmiMI	CAYNNNNRTG	3 cut(s)	15, 434, 606
SphI	GCATGC	1 cut(s)	596
Sse9I	AATT	2 cut(s)	662, 753
SspI	AATATT	1 cut(s)	555
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	748
TaaI	ACNGT	3 cut(s)	71, 112, 745
TasI	AATT	2 cut(s)	662, 753
TatI	WGTACW	2 cut(s)	312, 763
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	674, 775
Tru9I	TTAA	2 cut(s)	674, 775
TscAI	CASTG	3 cut(s)	117, 637, 748
TseFI	GTSAC	4 cut(s)	17, 476, 544, 739
TseI	GCWGC	1 cut(s)	352
Tsp45I	GTSAC	4 cut(s)	17, 476, 544, 739
TspDTI	ATGAA	5 cut(s)	27, 81, 85, 329, 655
TspRI	CASTG	3 cut(s)	117, 637, 748
Van91I	CCANNNNNTGG	1 cut(s)	487
XapI	RAATTY	1 cut(s)	662
XceI	RCATGY	1 cut(s)	596
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	759
ZrmI	AGTACT	2 cut(s)	314, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.