Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

11271824 .. 11276653

Gene Structure 4830 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1144900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATGAGTCTCAACTTCGATGACCAAGATGGGATACTGAGAACAATTTTCGATGCACCACCAACCCATTACACAGTAAAAGTACAATCGATTTCGTTGCTCACCAAACATAACTTGGAGAAATATGAATCTGGGGACTTTGTAGCCGGAGGATACAAATGGAAACTGGTTTTCTTTCCGAATGGAAACAAGAATAGGAATGTGAAAGAGCACATCTCTCTCTACTTGGTAATGTCTGGAGCAATTGCTCCCCAGATTTCTTCGGAAGTGTACGCTGTTGTCAGGTTGTTTATACTCAATCAAAACAACGGCAATTACTTCGTTCTTCAAGACTTTATTCTTTGGGCTGGTGTTGTGCTTCAACAGTTTCATGGGATGAAACTCGATTGGGAATTCGATCAATTTCTCTCCCACAAAGCTTTCACTGAAGCTTCAAATGGATTTCTCCTAGATGACACTTATGTGTTGGGAGCAGAGGTCTTTGTTTCTAAAGAGAGAAGCAAAGGCAAAGGAGAGCGTCTATCAATGGTAAAGGATCCTGTTATGTACAAGAATACTTGGAGGATTGACAACGTATCAAAGCTAGATGCGGAATCCTACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

202

Amino Acids

23.05

Weight (kDa)

5.96

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	23 - 160	5e-31	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	590
AclWI	GGATC	2 cut(s)	530, 543
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	3 cut(s)	84, 272, 548
AgsI	TTSAA	3 cut(s)	329, 362, 435
AleI	CACNNNNGTG	1 cut(s)	461
AluBI	AGCT	3 cut(s)	419, 431, 583
AluI	AGCT	3 cut(s)	419, 431, 583
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	530, 543
ApoI	RAATTY	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	535
Bbv12I	GWGCWC	1 cut(s)	213
BccI	CCATC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	4 cut(s)	79, 113, 301, 335
BciVI	GTATCC	2 cut(s)	27, 146
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	449, 584
BfuI	GTATCC	2 cut(s)	27, 146
BmiI	GGNNCC	1 cut(s)	537
BmsI	GCATC	2 cut(s)	43, 577
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	258
Bsa29I	ATCGAT	1 cut(s)	89
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse1I	ACTGG	1 cut(s)	171
BseCI	ATCGAT	1 cut(s)	89
BseGI	GGATG	1 cut(s)	381
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	171
BshVI	ATCGAT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp1407I	TGTACA	1 cut(s)	546
Bsp143I	GATC	2 cut(s)	397, 535
BspACI	CCGC	1 cut(s)	590
BspCNI	CTCAG	1 cut(s)	30
BspDI	ATCGAT	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	537
BspPI	GGATC	2 cut(s)	530, 543
BsrGI	TGTACA	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	2 cut(s)	397, 535
Bst4CI	ACNGT	2 cut(s)	76, 366
BstAUI	TGTACA	1 cut(s)	546
BstDEI	CTNAG	1 cut(s)	38
BstF5I	GGATG	1 cut(s)	381
BstKTI	GATC	2 cut(s)	400, 538
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	397, 535
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
Bsu15I	ATCGAT	1 cut(s)	89
BsuI	GTATCC	2 cut(s)	27, 146
BsuTUI	ATCGAT	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	423
ClaI	ATCGAT	1 cut(s)	89
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	83, 271, 547
CviAII	CATG	1 cut(s)	371
CviJI	RGCY	5 cut(s)	146, 347, 419, 431, 583
CviKI_1	RGCY	5 cut(s)	146, 347, 419, 431, 583
CviQI	GTAC	3 cut(s)	83, 271, 547
DdeI	CTNAG	1 cut(s)	38
DpnI	GATC	2 cut(s)	399, 537
DpnII	GATC	2 cut(s)	397, 535
Eco57I	CTGAAG	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	392
FaeI	CATG	1 cut(s)	374
FaiI	YATR	6 cut(s)	111, 126, 293, 372, 462, 545
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	370
FokI	GGATG	1 cut(s)	388
FspBI	CTAG	2 cut(s)	449, 584
GsuI	CTGGAG	1 cut(s)	258
HapII	CCGG	1 cut(s)	147
HgaI	GACGC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	374
HindIII	AAGCTT	2 cut(s)	417, 429
HinfI	GANTC	3 cut(s)	7, 128, 593
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	2 cut(s)	180, 265
Hpy188III	TCNNGA	2 cut(s)	237, 329
Hpy8I	GTNNAC	1 cut(s)	271
HpyCH4III	ACNGT	2 cut(s)	76, 366
HpyCH4IV	ACGT	1 cut(s)	573
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	38
HpySE526I	ACGT	1 cut(s)	573
Hsp92II	CATG	1 cut(s)	374
Kzo9I	GATC	2 cut(s)	397, 535
LmnI	GCTCC	3 cut(s)	239, 253, 470
LpnPI	CCDG	8 cut(s)	117, 152, 160, 222, 266, 268, 333, 552
LweI	GCATC	2 cut(s)	43, 577
MaeI	CTAG	2 cut(s)	449, 584
MaeII	ACGT	1 cut(s)	573
MalI	GATC	2 cut(s)	399, 537
MboI	GATC	2 cut(s)	397, 535
MboII	GAAGA	2 cut(s)	252, 317
MfeI	CAATTG	1 cut(s)	243
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	5 cut(s)	45, 243, 313, 392, 401
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	143, 469, 555
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	147
MunI	CAATTG	1 cut(s)	243
NdeII	GATC	2 cut(s)	397, 535
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	1 cut(s)	537
OliI	CACNNNNGTG	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	128, 593
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	537
PsuI	RGATCY	1 cut(s)	535
RsaI	GTAC	3 cut(s)	84, 272, 548
RsaNI	GTAC	3 cut(s)	83, 271, 547
RseI	CAYNNNNRTG	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	397, 535
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	287, 421, 433, 480, 576, 585
SfaNI	GCATC	2 cut(s)	43, 577
SmiMI	CAYNNNNRTG	1 cut(s)	461
Sse9I	AATT	5 cut(s)	45, 243, 313, 392, 401
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	2 cut(s)	449, 584
TaaI	ACNGT	2 cut(s)	76, 366
TaiI	ACGT	1 cut(s)	576
TaqI	TCGA	5 cut(s)	18, 51, 89, 384, 396
TasI	AATT	5 cut(s)	45, 243, 313, 392, 401
TatI	WGTACW	2 cut(s)	82, 546
TfiI	GAWTC	2 cut(s)	128, 593
TscAI	CASTG	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	141, 359, 392
TspRI	CASTG	1 cut(s)	430
XapI	RAATTY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XspI	CTAG	2 cut(s)	449, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.