Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

38111011 .. 38114752

Gene Structure 3742 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGCCTAGAAGATTCTGTCATTTAGATGGGCTTGCCACTCTTCAAGTCCTCGCCTTTGATGATGAAGATGCTTTTACAAAGAGAAATTGTATTCACGGGGCCAAGCTTGATGTGGGTTTTGATAAACTGGTGCCTCTAGATGAATTCCATGATGCATCTCATGGATACCTCGTTGATGACAAGTGGGTCTTTGGAGCCGAGGTTAGGAATTTTTCAAGTTTAGCTGATCCATACTACACCTCAGAACCATTCACTGCTGGAGGTCAAATTTGGATTATAAAACTCTATCCCACGGGAGTTGACCAACAAAACAGACATATTAGTGTTTTCTTGCACTTGGTTGGTCGAAAAGCAACTCCTCTTGCCACCAAAGTATTTGTAGAGTTTTCCATGCGCATTGTAAATCCATGGATCAATAGCATCTACTGGAGCCGAACGGATCCAGTCAAGAGGTGTTTCAGTATCGGCGGGCTAGGTTATGGTTGTCGTGGTTTCGTTACGTTGGATAATTTAACTCGGATTGTGTTTTTTGATACTTGCACAATTGAGACTGTGTTGACTGTTCATGGAATTACCGAAGGACCATGCGACTCGGAGGAAGAAAACAGTTCTATAAAGGCAAAGAGAACTAGAGTCGATCCAAACAAGATTAAGCCGAATTCTAAGGGCTCCATGTGTTGTTTCTGTTTCGTGTCAATGGCTGTCTTGGTCTTGTTACTCGGCAAGAACAAAGCCTCATGGGGACATTGGTTTGTGTCTACAAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

258

Amino Acids

28.97

Weight (kDa)

8.34

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	29 - 69	9.3e-06	MATH domain
MATH_2	PF22486	68 - 184	8e-16	MATH domain
MATH	PF00917	69 - 184	5.8e-06	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	281
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc16I	TGCGCA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	761
AciI	CCGC	1 cut(s)	471
AclWI	GGATC	5 cut(s)	224, 422, 437, 450, 635
AcsI	RAATTY	4 cut(s)	146, 211, 270, 661
AfiI	CCNNNNNNNGG	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	47, 219
AluBI	AGCT	2 cut(s)	109, 227
AluI	AGCT	2 cut(s)	109, 227
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	5 cut(s)	224, 422, 437, 450, 635
AoxI	GGCC	1 cut(s)	102
ApoI	RAATTY	4 cut(s)	146, 211, 270, 661
AspLEI	GCGC	1 cut(s)	399
AspS9I	GGNCC	2 cut(s)	102, 584
AvaII	GGWCC	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	674
BccI	CCATC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	4 cut(s)	9, 140, 476, 633
BfuI	GTATCC	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	102, 584
BmiI	GGNNCC	6 cut(s)	103, 135, 199, 434, 444, 673
BmsI	GCATC	4 cut(s)	61, 145, 167, 432
BpmI	CTGGAG	2 cut(s)	282, 451
BsaJI	CCNNGG	3 cut(s)	201, 294, 410
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	3 cut(s)	135, 434, 446
BseDI	CCNNGG	3 cut(s)	201, 294, 410
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	135, 434, 446
BseRI	GAGGAG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	759
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	759
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	674
Bsp143I	GATC	4 cut(s)	229, 414, 442, 640
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	257
BspLI	GGNNCC	6 cut(s)	103, 135, 199, 434, 444, 673
BspPI	GGATC	5 cut(s)	224, 422, 437, 450, 635
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	3 cut(s)	135, 434, 446
BssECI	CCNNGG	3 cut(s)	201, 294, 410
BssMI	GATC	4 cut(s)	229, 414, 442, 640
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	3 cut(s)	556, 565, 611
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	2 cut(s)	36, 473
BstDEI	CTNAG	3 cut(s)	244, 666, 771
BstDSI	CCRYGG	2 cut(s)	294, 410
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	232, 417, 445, 643
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	229, 414, 442, 640
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	2 cut(s)	294, 410
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	36, 473
CfoI	GCGC	1 cut(s)	399
Cfr13I	GGNCC	2 cut(s)	102, 584
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	8 cut(s)	152, 164, 394, 411, 569, 588, 676, 741
DdeI	CTNAG	3 cut(s)	244, 666, 771
DpnI	GATC	4 cut(s)	231, 416, 444, 642
DpnII	GATC	4 cut(s)	229, 414, 442, 640
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	674
Eco47I	GGWCC	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	146, 661
EcoT14I	CCWWGG	1 cut(s)	410
EcoT22I	ATGCAT	1 cut(s)	160
EcoT38I	GRGCYC	1 cut(s)	674
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	8 cut(s)	155, 167, 397, 414, 572, 591, 679, 744
FalI	AAGNNNNNCTT	2 cut(s)	176, 208
FaqI	GGGAC	1 cut(s)	759
FatI	CATG	8 cut(s)	151, 163, 393, 410, 568, 587, 675, 740
FauI	CCCGC	1 cut(s)	464
FblI	GTMKAC	1 cut(s)	761
FriOI	GRGCYC	1 cut(s)	674
FspAI	RTGCGCAY	1 cut(s)	398
FspBI	CTAG	4 cut(s)	9, 140, 476, 633
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	1 cut(s)	398
GsuI	CTGGAG	2 cut(s)	282, 451
HaeIII	GGCC	1 cut(s)	104
HhaI	GCGC	1 cut(s)	399
Hin1II	CATG	8 cut(s)	155, 167, 397, 414, 572, 591, 679, 744
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HincII	GTYRAC	2 cut(s)	304, 561
HindII	GTYRAC	2 cut(s)	304, 561
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	15, 593, 636
Hpy166II	GTNNAC	3 cut(s)	304, 561, 762
Hpy188I	TCNGA	3 cut(s)	247, 522, 598
Hpy188III	TCNNGA	2 cut(s)	140, 451
Hpy8I	GTNNAC	3 cut(s)	304, 561, 762
HpyAV	CCTTC	1 cut(s)	575
HpyCH4III	ACNGT	3 cut(s)	556, 565, 611
HpyCH4IV	ACGT	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	158, 337, 543
HpyF3I	CTNAG	3 cut(s)	244, 666, 771
HpySE526I	ACGT	1 cut(s)	503
Hsp92II	CATG	8 cut(s)	155, 167, 397, 414, 572, 591, 679, 744
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	229, 414, 442, 640
LmnI	GCTCC	3 cut(s)	197, 432, 677
LpnPI	CCDG	4 cut(s)	116, 246, 415, 459
LweI	GCATC	4 cut(s)	61, 145, 167, 432
MaeI	CTAG	4 cut(s)	9, 140, 476, 633
MaeII	ACGT	1 cut(s)	503
MaeIII	GTNAC	2 cut(s)	499, 717
MalI	GATC	4 cut(s)	231, 416, 444, 642
MboI	GATC	4 cut(s)	229, 414, 442, 640
MboII	GAAGA	4 cut(s)	24, 35, 80, 614
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	674
MluCI	AATT	8 cut(s)	88, 146, 211, 270, 511, 546, 573, 661
MlyI	GAGTC	2 cut(s)	587, 645
MmeI	TCCRAC	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	160
MseI	TTAA	2 cut(s)	515, 654
MslI	CAYNNNNRTG	2 cut(s)	27, 324
MunI	CAATTG	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	229, 414, 442, 640
NlaIII	CATG	8 cut(s)	155, 167, 397, 414, 572, 591, 679, 744
NlaIV	GGNNCC	6 cut(s)	103, 135, 199, 434, 444, 673
NmeAIII	GCCGAG	2 cut(s)	226, 702
NsbI	TGCGCA	1 cut(s)	398
NsiI	ATGCAT	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	15
PleI	GAGTC	2 cut(s)	587, 644
PpsI	GAGTC	2 cut(s)	587, 644
PsiI	TTATAA	1 cut(s)	281
PspN4I	GGNNCC	6 cut(s)	103, 135, 199, 434, 444, 673
PspPI	GGNCC	2 cut(s)	102, 584
PsuI	RGATCY	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	27, 324
SaqAI	TTAA	2 cut(s)	515, 654
Sau3AI	GATC	4 cut(s)	229, 414, 442, 640
Sau96I	GGNCC	2 cut(s)	102, 584
SchI	GAGTC	2 cut(s)	587, 645
SduI	GDGCHC	1 cut(s)	674
SetI	ASST	9 cut(s)	111, 174, 207, 229, 245, 268, 458, 481, 506
SfaNI	GCATC	4 cut(s)	61, 145, 167, 432
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	2 cut(s)	27, 324
Sse9I	AATT	8 cut(s)	88, 146, 211, 270, 511, 546, 573, 661
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	4 cut(s)	9, 140, 476, 633
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	3 cut(s)	556, 565, 611
TaiI	ACGT	1 cut(s)	506
TaqI	TCGA	2 cut(s)	349, 639
TasI	AATT	8 cut(s)	88, 146, 211, 270, 511, 546, 573, 661
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	2 cut(s)	515, 654
Tru9I	TTAA	2 cut(s)	515, 654
TscAI	CASTG	1 cut(s)	262
TspDTI	ATGAA	4 cut(s)	17, 81, 159, 557
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	584
XapI	RAATTY	4 cut(s)	146, 211, 270, 661
XbaI	TCTAGA	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	761
XspI	CTAG	4 cut(s)	9, 140, 476, 633
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.