RchiOBHm_Chr5g0048271

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
44995337 .. 44997438
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32607

Sequence Viewer

Length: 273 bp
ATGGTCATCGGAGGCGCTGCTCCGGCATGGTTTCATCGGGACGCTGCCCCGCATGTTGGCTTTGACATCATTGACACCCGAAGGTGCCGTTGTGAGGAGGGCTGCAACAGAAAAGAGAAGGTGGTGGAGAGCAATGGAATGAGGTCTGAACCTTTTGTCTTCCAAGCTGCTTGCTGCTTTCTCCTTCTTGTATTTTTTCCACCCTGCTATGCTCCGTTGTCCTCCCCCTTTTTCTTCTTTTCATGTAGTGTTTTTATACTGCACCCGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.19

Weight (kDa)

7.6

Isoelectric Point (pI)

62.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 56, 94
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Ama87I CYCGRG 1 cut(s) 265
ApeKI GCWGC 5 cut(s) 17, 44, 102, 167, 174
AspLEI GCGC 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 265
BanI GGYRCC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 5 cut(s) 4, 31, 89, 154, 161
BceAI ACGGC 1 cut(s) 72
BfoI RGCGCY 1 cut(s) 18
BisI GCNGC 5 cut(s) 18, 45, 103, 168, 175
BlsI GCNGC 5 cut(s) 19, 46, 104, 169, 176
BmeT110I CYCGRG 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 94
Bse3DI GCAATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 56, 94
BseMI GCAATG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 110
BseXI GCAGC 5 cut(s) 4, 31, 89, 154, 161
BsgI GTGCAG 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 23
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 56, 94
BsmFI GGGAC 1 cut(s) 53
BsoBI CYCGRG 1 cut(s) 265
BspACI CCGC 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 56
BstV1I GCAGC 5 cut(s) 4, 31, 89, 154, 161
BstV2I GAAGAC 1 cut(s) 151
Cac8I GCNNGC 1 cut(s) 172
CfoI GCGC 1 cut(s) 17
CseI GACGC 1 cut(s) 50
CviAII CATG 3 cut(s) 27, 53, 243
CviJI RGCY 3 cut(s) 60, 102, 167
CviKI_1 RGCY 3 cut(s) 60, 102, 167
Eco88I CYCGRG 1 cut(s) 265
FaeI CATG 3 cut(s) 30, 56, 246
FaiI YATR 5 cut(s) 28, 54, 210, 244, 257
FaqI GGGAC 1 cut(s) 53
FatI CATG 3 cut(s) 26, 52, 242
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 5 cut(s) 18, 45, 103, 168, 175
Fsp4HI GCNGC 5 cut(s) 18, 45, 103, 168, 175
GlaI GCGC 1 cut(s) 16
GluI GCNGC 5 cut(s) 18, 45, 103, 168, 175
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 1 cut(s) 23
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 17
Hin1II CATG 3 cut(s) 30, 56, 246
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HpaII CCGG 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 11, 148
Hpy188III TCNNGA 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 75, 112, 194
HpyCH4V TGCA 2 cut(s) 105, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
Hsp92II CATG 3 cut(s) 30, 56, 246
HspAI GCGC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 25, 217
LpnPI CCDG 2 cut(s) 36, 217
Lsp1109I GCAGC 5 cut(s) 4, 31, 89, 154, 161
MboII GAAGA 2 cut(s) 151, 226
MnlI CCTC 5 cut(s) 5, 88, 91, 135, 232
MspI CCGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 3 cut(s) 30, 56, 246
NlaIV GGNNCC 1 cut(s) 86
NspI RCATGY 1 cut(s) 56
PkrI GCNGC 5 cut(s) 19, 46, 104, 169, 176
PspN4I GGNNCC 1 cut(s) 86
SatI GCNGC 5 cut(s) 18, 45, 103, 168, 175
SetI ASST 5 cut(s) 86, 123, 146, 154, 169
SsiI CCGC 1 cut(s) 50
TseI GCWGC 5 cut(s) 17, 44, 102, 167, 174
TspDTI ATGAA 2 cut(s) 23, 231
TspGWI ACGGA 1 cut(s) 204
XceI RCATGY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.