Rh4DG282100

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
50415936 .. 50417681
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG282100.1

Sequence Viewer

Length: 951 bp
ATGGCTATCCTTAACTCGGACCAAGATGGCGTTTTCAGATCACTTTCAGATTCACTCCCAACTCATTGCACTCTAAATATAGAGTCGTTTTCGTTGCTAGCTGAATATCATGGAGTCAGTGGATATGAATCAAAAGAGTTCGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTACAAAGCAGAAGTGCTTTCACGCAGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATCCGTCTTCAAGAATTTACTGATGTTTCTAATGGATATCTCATCGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACTGGCCAGGGAGAGTGTATATCAAGGATAAAGAGCCCTCGTATGTACAAGCATGTTTGGAAACTTGAAAAATTTTCAAAGTTGAACGCTCAGTTCTACCACTCAAAACAATTCAGTGCAGAAGGACTAAACTGGGCTATAGTACTCTATCCCAAGAGGAAAAGCACCACAAACGATCCTTCTCATCTGTCTGTTTACTTGCAATGGGTTGCTGAAAAAACAAGTCATGTCACCAAAGTATTTACAGAGTATGCCTTACGCATTGTAGATCGAAATCATGCCAGCATTCAATATCGCTCAGTTAAGTACTGTTTTAACACTGCCTCTCGGACTCATGGTTGGCCTGAATTCATTTCACTTGGTGATTTAAGTGGTCTTTTGAAGTACGATACTTGCCTAGTGGAGGCAGAGGTCACTGTTCGTGCAATTGCTAAGATTCTTGCTAAAGATGCATGCTGA

Protein Analysis

316

Amino Acids

35.97

Weight (kDa)

8.29

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 22 - 157 7.6e-31 MATH domain
MATH PF00917 40 - 159 1e-11 MATH domain
MATH_2 PF22486 181 - 302 1.5e-21 MATH domain
MATH PF00917 188 - 304 4.8e-12 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
AccI GTMKAC 1 cut(s) 222
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 3 cut(s) 410, 563, 839
AcuI CTGAAG 1 cut(s) 236
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 6 cut(s) 176, 317, 539, 636, 800, 878
AfiI CCNNNNNNNGG 2 cut(s) 16, 895
AgsI TTSAA 7 cut(s) 329, 407, 560, 570, 577, 782, 874
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 3 cut(s) 101, 394, 464
AluI AGCT 3 cut(s) 101, 394, 464
AlwI GGATC 1 cut(s) 662
AoxI GGCC 2 cut(s) 496, 833
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 410, 563, 839
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 2 cut(s) 715, 866
AsuII TTCGAA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 19
BalI TGGCCA 1 cut(s) 498
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 213, 395
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 374
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 500
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 298
BfaI CTAG 2 cut(s) 98, 890
BfmI CTRYAG 1 cut(s) 630
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 2 cut(s) 636, 800
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 634
BmsI GCATC 2 cut(s) 322, 931
BmtI GCTAGC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 634
BpiI GAAGAC 2 cut(s) 213, 395
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 441
BsaBI GATNNNNATC 2 cut(s) 127, 765
BsaJI CCNNGG 1 cut(s) 499
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 453, 483
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 895
Bse1I ACTGG 4 cut(s) 171, 262, 499, 629
Bse3DI GCAATG 2 cut(s) 64, 701
Bse8I GATNNNNATC 2 cut(s) 127, 765
BseBI CCWGG 1 cut(s) 500
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 499
BseJI GATNNNNATC 2 cut(s) 127, 765
BseLI CCNNNNNNNGG 2 cut(s) 16, 895
BseMI GCAATG 2 cut(s) 64, 701
BseMII CTCAG 3 cut(s) 456, 596, 804
BseNI ACTGG 4 cut(s) 171, 262, 499, 629
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 630
BshFI GGCC 2 cut(s) 498, 835
BshVI ATCGAT 1 cut(s) 441
BsiSI CCGG 2 cut(s) 147, 237
BslI CCNNNNNNNGG 2 cut(s) 16, 895
BsmI GAATGC 1 cut(s) 777
BsnI GGCC 2 cut(s) 498, 835
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 530
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 4 cut(s) 38, 298, 667, 760
BspANI GGCC 2 cut(s) 498, 835
BspCNI CTCAG 3 cut(s) 457, 595, 803
BspDI ATCGAT 1 cut(s) 441
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 662
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 2 cut(s) 64, 701
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 4 cut(s) 171, 262, 499, 629
BssECI CCNNGG 1 cut(s) 499
BssMI GATC 4 cut(s) 38, 298, 667, 760
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 2 cut(s) 803, 910
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 99, 775, 946
BstDEI CTNAG 4 cut(s) 465, 582, 790, 924
BstENI CCTNNNNNAGG 1 cut(s) 893
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 4 cut(s) 41, 301, 670, 763
BstMBI GATC 4 cut(s) 38, 298, 667, 760
BstMWI GCNNNNNNNGC 1 cut(s) 941
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 2 cut(s) 548, 948
BstSCI CCNGG 1 cut(s) 498
BstSFI CTRYAG 1 cut(s) 630
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 213, 395
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 498, 835
BsuTUI ATCGAT 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 4 cut(s) 124, 613, 810, 906
Cac8I GCNNGC 3 cut(s) 99, 775, 946
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 6 cut(s) 175, 316, 538, 635, 799, 877
CviAII CATG 7 cut(s) 110, 377, 545, 719, 770, 827, 945
CviQI GTAC 6 cut(s) 175, 316, 538, 635, 799, 877
DdeI CTNAG 4 cut(s) 465, 582, 790, 924
DpnI GATC 4 cut(s) 40, 300, 669, 762
DpnII GATC 4 cut(s) 38, 298, 667, 760
DraIII CACNNNGTG 1 cut(s) 854
EaeI YGGCCR 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 893
EcoRI GAATTC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 498
EcoRV GATATC 1 cut(s) 434
EcoT22I ATGCAT 1 cut(s) 946
EcoT38I GRGCYC 1 cut(s) 530
FaeI CATG 7 cut(s) 113, 380, 548, 722, 773, 830, 948
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 7 cut(s) 109, 376, 544, 718, 769, 826, 944
FauNDI CATATG 1 cut(s) 158
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 98, 890
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 2 cut(s) 498, 835
HapII CCGG 2 cut(s) 147, 237
HhaI GCGC 1 cut(s) 231
Hin1II CATG 7 cut(s) 113, 380, 548, 722, 773, 830, 948
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 7 cut(s) 50, 83, 114, 128, 245, 823, 928
HpaII CCGG 2 cut(s) 147, 237
HphI GGTGA 2 cut(s) 715, 866
Hpy166II GTNNAC 2 cut(s) 223, 688
Hpy188I TCNGA 6 cut(s) 19, 38, 49, 255, 303, 822
Hpy188III TCNNGA 2 cut(s) 326, 407
Hpy8I GTNNAC 2 cut(s) 223, 688
HpyAV CCTTC 2 cut(s) 608, 681
HpyCH4III ACNGT 2 cut(s) 803, 910
HpyCH4V TGCA 6 cut(s) 69, 480, 611, 694, 917, 944
HpyF10VI GCNNNNNNNGC 1 cut(s) 941
HpyF3I CTNAG 4 cut(s) 465, 582, 790, 924
Hsp92II CATG 7 cut(s) 113, 380, 548, 722, 773, 830, 948
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 4 cut(s) 38, 298, 667, 760
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 2 cut(s) 322, 931
MaeI CTAG 2 cut(s) 98, 890
MaeIII GTNAC 2 cut(s) 721, 904
MalI GATC 4 cut(s) 40, 300, 669, 762
MboI GATC 4 cut(s) 38, 298, 667, 760
MboII GAAGA 6 cut(s) 205, 208, 218, 254, 341, 395
MfeI CAATTG 1 cut(s) 918
MhlI GDGCHC 1 cut(s) 530
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 5 cut(s) 410, 563, 602, 839, 918
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 3 cut(s) 92, 123, 817
MnlI CCTC 7 cut(s) 143, 460, 540, 642, 826, 889, 895
Mox20I TGGCCA 1 cut(s) 498
Mph1103I ATGCAT 1 cut(s) 946
MscI TGGCCA 1 cut(s) 498
MseI TTAA 4 cut(s) 12, 795, 807, 860
Msp20I TGGCCA 1 cut(s) 498
MspI CCGG 2 cut(s) 147, 237
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 918
Mva1269I GAATGC 1 cut(s) 777
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 1 cut(s) 941
NdeI CATATG 1 cut(s) 158
NdeII GATC 4 cut(s) 38, 298, 667, 760
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 7 cut(s) 113, 380, 548, 722, 773, 830, 948
NmuCI GTSAC 2 cut(s) 721, 904
NsbI TGCGCA 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 946
NspI RCATGY 2 cut(s) 548, 948
NspV TTCGAA 1 cut(s) 141
PaeI GCATGC 1 cut(s) 948
PctI GAATGC 1 cut(s) 777
PfeI GAWTC 4 cut(s) 50, 128, 245, 928
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 3 cut(s) 91, 122, 817
PpsI GAGTC 3 cut(s) 91, 122, 817
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspPI GGNCC 1 cut(s) 19
RsaI GTAC 6 cut(s) 176, 317, 539, 636, 800, 878
RsaNI GTAC 6 cut(s) 175, 316, 538, 635, 799, 877
SaqAI TTAA 4 cut(s) 12, 795, 807, 860
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 4 cut(s) 38, 298, 667, 760
Sau96I GGNCC 1 cut(s) 19
ScaI AGTACT 2 cut(s) 636, 800
SchI GAGTC 3 cut(s) 92, 123, 817
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 530
SetI ASST 6 cut(s) 103, 385, 396, 466, 471, 906
SfaNI GCATC 2 cut(s) 322, 931
SfcI CTRYAG 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 19
SphI GCATGC 1 cut(s) 948
Sse9I AATT 5 cut(s) 410, 563, 602, 839, 918
SspMI CTAG 2 cut(s) 98, 890
StyD4I CCNGG 1 cut(s) 498
TaaI ACNGT 2 cut(s) 803, 910
TaqI TCGA 3 cut(s) 141, 441, 763
TasI AATT 5 cut(s) 410, 563, 602, 839, 918
TatI WGTACW 4 cut(s) 315, 537, 634, 798
TfiI GAWTC 4 cut(s) 50, 128, 245, 928
Tru1I TTAA 4 cut(s) 12, 795, 807, 860
Tru9I TTAA 4 cut(s) 12, 795, 807, 860
TscAI CASTG 4 cut(s) 124, 613, 817, 913
TseFI GTSAC 2 cut(s) 721, 904
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 2 cut(s) 721, 904
TspDTI ATGAA 3 cut(s) 141, 365, 832
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 4 cut(s) 124, 613, 817, 913
VpaK11BI GGWCC 1 cut(s) 19
XagI CCTNNNNNAGG 1 cut(s) 893
XapI RAATTY 3 cut(s) 410, 563, 839
XceI RCATGY 2 cut(s) 548, 948
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 98, 890
ZrmI AGTACT 2 cut(s) 636, 800
Zsp2I ATGCAT 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.