Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

18010965 .. 18014546

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGAACATACAAAAGAGACGCTTCACCACATCACTTTAAGTTGGAAATAAAGTCGTACTCCTCATTATCAACCACGCTCGCAAGAAAGTATGAATCTAGTGCGTTTGAAGCTGGCGGTCACAAATGGAGGTTGTCACTTTACCCAAATGAAATGATAAATGGACATTGTTACATCTCCCTCTACTTGGCAACAGCGAAATCAAGCGTTCCTTCTTTGAGTTCAATGTTCAGTCGTATTTGTGCCCCGCGTTCTTTGATGTCAGAATACAATGGTATTAGTGACGGGGAACACGTTTATGCCACTTTTAGATTGTTTGTATTTGATCAGACACAGCAGGAATATTTTACCGTCGAAGATGGGGCCGGAATATTAAGCCGATTTGATCGCGTGACAACGGAGGTGGGTTTTGCAAAATTTCTCCTCCGCGATACTTTCGAGCATCCTTCTGAGGGATACCTTCTGAATGACTGCTGCACATTTGGGGCGGAGGTTTTTGTTAATACGAGTGGGAGGACGAGTTATGGGGAATCTATTTCCCGGATACACAAGTCCATTCTCAGCCCCCCTTTCCGTTATGATTTGGTAAAGTTCTCGTCACAATTTGGGCTGGAGCACTTGTGTCCAAATCTGATCAGTTTTGGAGAAAGAAAATGGCAGCTATGTGTTTATCCAAAAGGATACGGGCAACATAAGGACGTATCACTGTCACTTTACCTACGATCGGCCGACGATTTGTACACCCTTCCCAGCGTTTATGTAGAATTCAAGCTTCGGGTAGTGGATCGAGCCTTTAATTTACACCATATTGAACGAACAGGCAAACACTGGTTCGTGTCCTCGGACAACACTTTTGGTTGGCTAGATTTTATGCCGTTGCGAACTTTAAATGACCCTTCAAAGGGGTTCCTTGGGGATGATATATTATCTGTTGTAGTTGAAATGCTGGTTAAGCATGGGTCCCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005911 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0030054 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

324

Amino Acids

36.96

Weight (kDa)

7.68

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	250, 390, 429
AciI	CCGC	4 cut(s)	117, 248, 427, 488
AclWI	GGATC	1 cut(s)	792
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	416, 764
AfaI	GTAC	2 cut(s)	59, 740
AfiI	CCNNNNNNNGG	5 cut(s)	187, 452, 724, 901, 902
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	6 cut(s)	110, 225, 769, 812, 900, 941
AluBI	AGCT	3 cut(s)	113, 661, 772
AluI	AGCT	3 cut(s)	113, 661, 772
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	1 cut(s)	792
AoxI	GGCC	2 cut(s)	363, 726
ApeKI	GCWGC	2 cut(s)	474, 658
ApoI	RAATTY	2 cut(s)	416, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	836, 868
AspS9I	GGNCC	2 cut(s)	363, 960
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	960
BaeGI	GKGCMC	1 cut(s)	247
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
Bbv12I	GWGCWC	1 cut(s)	618
BbvI	GCAGC	2 cut(s)	461, 670
BccI	CCATC	1 cut(s)	353
BceAI	ACGGC	1 cut(s)	859
BciVI	GTATCC	3 cut(s)	449, 537, 674
BclI	TGATCA	2 cut(s)	325, 633
BcnI	CCSGG	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	99, 863
BfuI	GTATCC	3 cut(s)	449, 537, 674
BisI	GCNGC	2 cut(s)	475, 659
BlsI	GCNGC	2 cut(s)	476, 660
Bme1390I	CCNGG	1 cut(s)	541
Bme18I	GGWCC	1 cut(s)	960
BmgT120I	GGNCC	2 cut(s)	363, 960
BmiI	GGNNCC	4 cut(s)	364, 908, 961, 962
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	1 cut(s)	451
BpmI	CTGGAG	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	840, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	505, 535, 605, 635
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 452, 724, 901, 902
Bse1I	ACTGG	1 cut(s)	833
BseDI	CCNNGG	2 cut(s)	840, 910
BseGI	GGATG	2 cut(s)	442, 922
BseLI	CCNNNNNNNGG	5 cut(s)	187, 452, 724, 901, 902
BseMII	CTCAG	2 cut(s)	441, 574
BseNI	ACTGG	1 cut(s)	833
BseRI	GAGGAG	2 cut(s)	52, 413
BseSI	GKGCMC	1 cut(s)	247
BseX3I	CGGCCG	1 cut(s)	726
BseXI	GCAGC	2 cut(s)	461, 670
BseYI	CCCAGC	1 cut(s)	749
BsgI	GTGCAG	1 cut(s)	460
Bsh1236I	CGCG	3 cut(s)	250, 390, 429
Bsh1285I	CGRYCG	2 cut(s)	725, 729
BshFI	GGCC	2 cut(s)	365, 728
BsiEI	CGRYCG	2 cut(s)	725, 729
BsiHKAI	GWGCWC	1 cut(s)	618
BsiSI	CCGG	2 cut(s)	366, 541
BslFI	GGGAC	1 cut(s)	946
BslI	CCNNNNNNNGG	5 cut(s)	187, 452, 724, 901, 902
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	946
BsnI	GGCC	2 cut(s)	365, 728
Bsp1286I	GDGCHC	2 cut(s)	247, 618
Bsp1407I	TGTACA	1 cut(s)	738
Bsp143I	GATC	5 cut(s)	325, 385, 633, 722, 784
BspACI	CCGC	4 cut(s)	117, 248, 427, 488
BspANI	GGCC	2 cut(s)	365, 728
BspCNI	CTCAG	2 cut(s)	442, 573
BspFNI	CGCG	3 cut(s)	250, 390, 429
BspLI	GGNNCC	4 cut(s)	364, 908, 961, 962
BspPI	GGATC	1 cut(s)	792
BsrGI	TGTACA	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	833
BssECI	CCNNGG	2 cut(s)	840, 910
BssMI	GATC	5 cut(s)	325, 385, 633, 722, 784
BssT1I	CCWWGG	1 cut(s)	910
Bst4CI	ACNGT	2 cut(s)	352, 708
BstAUI	TGTACA	1 cut(s)	738
BstC8I	GCNNGC	2 cut(s)	81, 115
BstDEI	CTNAG	2 cut(s)	450, 560
BstF5I	GGATG	2 cut(s)	442, 922
BstFNI	CGCG	3 cut(s)	250, 390, 429
BstKTI	GATC	5 cut(s)	328, 388, 636, 725, 787
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	5 cut(s)	325, 385, 633, 722, 784
BstMCI	CGRYCG	2 cut(s)	725, 729
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 952
BstSCI	CCNGG	1 cut(s)	539
BstSLI	GKGCMC	1 cut(s)	247
BstUI	CGCG	3 cut(s)	250, 390, 429
BstV1I	GCAGC	2 cut(s)	461, 670
BstZI	CGGCCG	1 cut(s)	726
BsuI	GTATCC	3 cut(s)	449, 537, 674
BsuRI	GGCC	2 cut(s)	365, 728
BtsCI	GGATG	2 cut(s)	442, 922
BtsIMutI	CAGTG	2 cut(s)	704, 826
Cac8I	GCNNGC	2 cut(s)	81, 115
Cfr13I	GGNCC	2 cut(s)	363, 960
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	58, 739
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	1 cut(s)	956
CviQI	GTAC	2 cut(s)	58, 739
DdeI	CTNAG	2 cut(s)	450, 560
DpnI	GATC	5 cut(s)	327, 387, 635, 724, 786
DpnII	GATC	5 cut(s)	325, 385, 633, 722, 784
DraI	TTTAAA	1 cut(s)	888
EaeI	YGGCCR	1 cut(s)	726
EagI	CGGCCG	1 cut(s)	726
EciI	GGCGGA	1 cut(s)	503
EclXI	CGGCCG	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	910
Eco47I	GGWCC	1 cut(s)	960
Eco52I	CGGCCG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	960
EcoRI	GAATTC	1 cut(s)	764
EcoT14I	CCWWGG	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	910
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	1 cut(s)	959
FalI	AAGNNNNNCTT	4 cut(s)	7, 39, 196, 228
FaqI	GGGAC	1 cut(s)	946
FatI	CATG	1 cut(s)	955
FauI	CCCGC	1 cut(s)	255
FbaI	TGATCA	2 cut(s)	325, 633
Fnu4HI	GCNGC	2 cut(s)	475, 659
FokI	GGATG	2 cut(s)	429, 929
Fsp4HI	GCNGC	2 cut(s)	475, 659
FspBI	CTAG	2 cut(s)	99, 863
GluI	GCNGC	2 cut(s)	475, 659
GsaI	CCCAGC	1 cut(s)	753
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	365, 728
HapII	CCGG	2 cut(s)	366, 541
HgaI	GACGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	959
HindIII	AAGCTT	1 cut(s)	770
HinfI	GANTC	2 cut(s)	95, 530
HpaII	CCGG	2 cut(s)	366, 541
HphI	GGTGA	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	741
Hpy188I	TCNGA	6 cut(s)	265, 330, 451, 465, 633, 844
Hpy8I	GTNNAC	1 cut(s)	741
Hpy99I	CGWCG	2 cut(s)	356, 734
HpyAV	CCTTC	5 cut(s)	222, 456, 470, 755, 906
HpyCH4III	ACNGT	2 cut(s)	352, 708
HpyCH4IV	ACGT	2 cut(s)	294, 699
HpyCH4V	TGCA	2 cut(s)	413, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 952
HpyF3I	CTNAG	2 cut(s)	450, 560
HpySE526I	ACGT	2 cut(s)	294, 699
Hsp92II	CATG	1 cut(s)	959
KflI	GGGWCCC	1 cut(s)	960
Ksp22I	TGATCA	2 cut(s)	325, 633
Kzo9I	GATC	5 cut(s)	325, 385, 633, 722, 784
LmnI	GCTCC	1 cut(s)	613
LpnPI	CCDG	9 cut(s)	99, 323, 379, 554, 596, 763, 804, 814, 932
Lsp1109I	GCAGC	2 cut(s)	461, 670
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	99, 863
MaeII	ACGT	2 cut(s)	294, 699
MaeIII	GTNAC	7 cut(s)	119, 135, 170, 281, 391, 597, 708
MalI	GATC	5 cut(s)	327, 387, 635, 724, 786
MboI	GATC	5 cut(s)	325, 385, 633, 722, 784
MboII	GAAGA	1 cut(s)	368
MhlI	GDGCHC	2 cut(s)	247, 618
MluCI	AATT	4 cut(s)	416, 602, 764, 796
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	9 cut(s)	73, 123, 191, 394, 434, 445, 484, 507, 850
MseI	TTAA	6 cut(s)	39, 374, 501, 795, 887, 951
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	2 cut(s)	366, 541
MspR9I	CCNGG	1 cut(s)	541
MvnI	CGCG	3 cut(s)	250, 390, 429
MwoI	GCNNNNNNNGC	2 cut(s)	110, 952
NciI	CCSGG	1 cut(s)	541
NdeII	GATC	5 cut(s)	325, 385, 633, 722, 784
NlaIII	CATG	1 cut(s)	959
NlaIV	GGNNCC	4 cut(s)	364, 908, 961, 962
NmuCI	GTSAC	6 cut(s)	119, 135, 281, 391, 597, 708
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	95, 530
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	476, 660
Ple19I	CGATCG	1 cut(s)	725
PpuMI	RGGWCCY	1 cut(s)	960
Psp5II	RGGWCCY	1 cut(s)	960
PspFI	CCCAGC	1 cut(s)	749
PspN4I	GGNNCC	4 cut(s)	364, 908, 961, 962
PspPI	GGNCC	2 cut(s)	363, 960
PspPPI	RGGWCCY	1 cut(s)	960
PvuI	CGATCG	1 cut(s)	725
RsaI	GTAC	2 cut(s)	59, 740
RsaNI	GTAC	2 cut(s)	58, 739
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	6 cut(s)	39, 374, 501, 795, 887, 951
SatI	GCNGC	2 cut(s)	475, 659
Sau3AI	GATC	5 cut(s)	325, 385, 633, 722, 784
Sau96I	GGNCC	2 cut(s)	363, 960
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	247, 618
SfaNI	GCATC	1 cut(s)	451
SinI	GGWCC	1 cut(s)	960
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	4 cut(s)	416, 602, 764, 796
SsiI	CCGC	4 cut(s)	117, 248, 427, 488
SspI	AATATT	2 cut(s)	344, 372
SspMI	CTAG	2 cut(s)	99, 863
StyD4I	CCNGG	1 cut(s)	539
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	2 cut(s)	352, 708
TaiI	ACGT	2 cut(s)	297, 702
TaqI	TCGA	3 cut(s)	354, 438, 787
TasI	AATT	4 cut(s)	416, 602, 764, 796
TatI	WGTACW	1 cut(s)	738
TfiI	GAWTC	2 cut(s)	95, 530
Tru1I	TTAA	6 cut(s)	39, 374, 501, 795, 887, 951
Tru9I	TTAA	6 cut(s)	39, 374, 501, 795, 887, 951
TscAI	CASTG	2 cut(s)	711, 833
TseFI	GTSAC	6 cut(s)	119, 135, 281, 391, 597, 708
TseI	GCWGC	2 cut(s)	474, 658
Tsp45I	GTSAC	6 cut(s)	119, 135, 281, 391, 597, 708
TspDTI	ATGAA	2 cut(s)	108, 165
TspGWI	ACGGA	2 cut(s)	413, 563
TspRI	CASTG	2 cut(s)	711, 833
VpaK11BI	GGWCC	1 cut(s)	960
XapI	RAATTY	2 cut(s)	416, 764
XspI	CTAG	2 cut(s)	99, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.