Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11423490 .. 11425246

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1146500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTTGATGCCGGTATTGATAAACTCATCTCACTGAAAGAATTTACTGATGCTTCCAATGGCTATCTGGTAAATGACGACTGCGTGGTTGGAGCTGAGGTCTTCGTTTGTAAAGAAAAAAGAGCAGCCAAGGCAGAGTTTCTATCAATGAGCTATTATTCTTTTACGTACAAGCATGTTTGGAACGTTGAGAACTTTTCAAAGTTAGATGCCATACTTGACTCGGAACCATTCACTGTTGGAAACAAGAAATGGAAGATAGTGCTCCATCCTAAGGGAGACTCGAACGGAAAAGGTACTCATATTTCTCTTTTCTTAGCATTGGCTGATCCGGAAACCCTCCCTCCTCGTTCCAAAACGTGTGTGGAGTTTTCCCTGCGCATTGTCTATCGAATGAATCGCAAGACTAATCATTGTCAGAAAGCTACTAATCAATGGTTTGATGCCTCGAGTCCGAGTTGGGGTTGGTCTCACTTCATTGCACTGGACACTTTCAGTAAGGCCGGCAAGGGCGATTTTGTAAAGGATACTTGCTTGGTAGAGGCCGAGGTCACCGTCCATGGAAATTCTCAAATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

7.0

Isoelectric Point (pI)

17.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	58 - 184	4.9e-31	MATH domain
MATH	PF00917	63 - 186	1.3e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	331
AclI	AACGTT	1 cut(s)	186
AclWI	GGATC	1 cut(s)	323
AcsI	RAATTY	2 cut(s)	41, 565
AfaI	GTAC	2 cut(s)	170, 298
AfiI	CCNNNNNNNGG	2 cut(s)	274, 461
AflIII	ACRYGT	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	201
AluBI	AGCT	3 cut(s)	95, 153, 425
AluI	AGCT	3 cut(s)	95, 153, 425
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	2 cut(s)	273, 474
AlwI	GGATC	1 cut(s)	323
Ama87I	CYCGRG	1 cut(s)	448
Aor13HI	TCCGGA	1 cut(s)	331
AoxI	GGCC	2 cut(s)	501, 543
ApeKI	GCWGC	1 cut(s)	125
ApoI	RAATTY	2 cut(s)	41, 565
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	544
AvaI	CYCGRG	1 cut(s)	448
AxyI	CCTNAGG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	94
Bbv12I	GWGCWC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	137
BccI	CCATC	1 cut(s)	276
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	2 cut(s)	273, 474
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	3 cut(s)	40, 199, 433
BpiI	GAAGAC	1 cut(s)	94
Bpu10I	CCTNAGC	1 cut(s)	96
BsaAI	YACGTR	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	129, 546, 559
BsaWI	WCCGGW	1 cut(s)	331
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 328, 358
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 461
Bse118I	RCCGGY	2 cut(s)	11, 503
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	331
BseDI	CCNNGG	3 cut(s)	129, 546, 559
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	2 cut(s)	274, 461
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	2 cut(s)	503, 545
BsiHKAI	GWGCWC	1 cut(s)	267
BsiHKCI	CYCGRG	1 cut(s)	448
BsiSI	CCGG	3 cut(s)	12, 332, 504
BslI	CCNNNNNNNGG	2 cut(s)	274, 461
BsmAI	GTCTC	2 cut(s)	273, 474
BsnI	GGCC	2 cut(s)	503, 545
Bso31I	GGTCTC	1 cut(s)	474
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp13I	TCCGGA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	328
Bsp19I	CCATGG	1 cut(s)	559
BspANI	GGCC	2 cut(s)	503, 545
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	331
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	477
BsrFI	RCCGGY	2 cut(s)	11, 503
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	2 cut(s)	11, 503
BssECI	CCNNGG	3 cut(s)	129, 546, 559
BssMI	GATC	1 cut(s)	328
BssT1I	CCWWGG	2 cut(s)	129, 559
Bst4CI	ACNGT	2 cut(s)	238, 556
BstBAI	YACGTR	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	505
BstDEI	CTNAG	3 cut(s)	96, 273, 316
BstDSI	CCRYGG	1 cut(s)	559
BstEII	GGTNACC	1 cut(s)	550
BstF5I	GGATG	1 cut(s)	268
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	2 cut(s)	273, 474
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	550
BstSNI	TACGTA	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	94
Bsu36I	CCTNAGG	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	503, 545
BtgI	CCRYGG	1 cut(s)	559
BtsCI	GGATG	1 cut(s)	268
BtsIMutI	CAGTG	3 cut(s)	32, 234, 482
Cac8I	GCNNGC	1 cut(s)	505
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	2 cut(s)	11, 503
Csp6I	GTAC	2 cut(s)	169, 297
CviAII	CATG	2 cut(s)	176, 560
CviJI	RGCY	8 cut(s)	63, 95, 128, 153, 326, 425, 503, 545
CviKI_1	RGCY	8 cut(s)	63, 95, 128, 153, 326, 425, 503, 545
CviQI	GTAC	2 cut(s)	169, 297
DdeI	CTNAG	3 cut(s)	96, 273, 316
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	168
Eco130I	CCWWGG	2 cut(s)	129, 559
Eco31I	GGTCTC	1 cut(s)	474
Eco81I	CCTNAGG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	448
Eco91I	GGTNACC	1 cut(s)	550
EcoO65I	GGTNACC	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	129, 559
ErhI	CCWWGG	2 cut(s)	129, 559
FaeI	CATG	2 cut(s)	179, 563
FaiI	YATR	4 cut(s)	177, 215, 303, 561
FatI	CATG	2 cut(s)	175, 559
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	126
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	503, 545
HapII	CCGG	3 cut(s)	12, 332, 504
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	2 cut(s)	179, 563
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	4 cut(s)	221, 281, 397, 451
HpaII	CCGG	3 cut(s)	12, 332, 504
HphI	GGTGA	1 cut(s)	544
Hpy188I	TCNGA	3 cut(s)	226, 420, 456
Hpy188III	TCNNGA	1 cut(s)	332
HpyCH4III	ACNGT	2 cut(s)	238, 556
HpyCH4IV	ACGT	3 cut(s)	167, 186, 359
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	3 cut(s)	96, 273, 316
HpySE526I	ACGT	3 cut(s)	167, 186, 359
Hsp92II	CATG	2 cut(s)	179, 563
HspAI	GCGC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	331
KroI	GCCGGC	1 cut(s)	503
KroNI	GCCGGC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	2 cut(s)	92, 270
LpnPI	CCDG	6 cut(s)	25, 53, 345, 389, 470, 517
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	3 cut(s)	40, 199, 433
MaeII	ACGT	3 cut(s)	167, 186, 359
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	2 cut(s)	94, 268
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	41, 565
MlyI	GAGTC	3 cut(s)	215, 275, 460
MmeI	TCCRAC	2 cut(s)	70, 220
MnlI	CCTC	7 cut(s)	91, 350, 354, 357, 457, 535, 541
MroI	TCCGGA	1 cut(s)	331
MroNI	GCCGGC	1 cut(s)	503
MspI	CCGG	3 cut(s)	12, 332, 504
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	505
NcoI	CCATGG	1 cut(s)	559
NdeII	GATC	1 cut(s)	328
NgoMIV	GCCGGC	1 cut(s)	503
NlaIII	CATG	2 cut(s)	179, 563
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	1 cut(s)	571
NmuCI	GTSAC	1 cut(s)	550
NsbI	TGCGCA	1 cut(s)	380
NspI	RCATGY	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	448
PdiI	GCCGGC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	3 cut(s)	215, 275, 459
PpsI	GAGTC	3 cut(s)	215, 275, 459
Ppu21I	YACGTR	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	186
PspEI	GGTNACC	1 cut(s)	550
PspN4I	GGNNCC	1 cut(s)	228
PspXI	VCTCGAGB	1 cut(s)	448
RsaI	GTAC	2 cut(s)	170, 298
RsaNI	GTAC	2 cut(s)	169, 297
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	328
SchI	GAGTC	3 cut(s)	215, 275, 460
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	9 cut(s)	97, 102, 155, 170, 189, 298, 362, 427, 552
SfaNI	GCATC	3 cut(s)	40, 199, 433
Sfr274I	CTCGAG	1 cut(s)	448
SlaI	CTCGAG	1 cut(s)	448
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
SnaBI	TACGTA	1 cut(s)	168
Sse9I	AATT	2 cut(s)	41, 565
StyI	CCWWGG	2 cut(s)	129, 559
TaaI	ACNGT	2 cut(s)	238, 556
TaiI	ACGT	3 cut(s)	170, 189, 362
TaqI	TCGA	3 cut(s)	284, 391, 449
TasI	AATT	2 cut(s)	41, 565
TfiI	GAWTC	1 cut(s)	397
TscAI	CASTG	3 cut(s)	39, 241, 489
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	1 cut(s)	125
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	410, 466
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	39, 241, 489
XapI	RAATTY	2 cut(s)	41, 565
XceI	RCATGY	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	2 cut(s)	64, 361
XhoI	CTCGAG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.