Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

11087766 .. 11089806

Gene Structure 2041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1142800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTGTTATCCGTTTCAACAAAATGGGTTTTCGATATCATATTCAGATTCAGCTCCAACTCATTACTCTCTGAAAATCGGGTCATTTTCATGGCTAACCAAAATTTCAGTGGACAAATATGAGTCGGGAGAATTTGAAGCTGGAGGATACAAATGGAAACTAGTGCTCTACCCGAATGGAAACAAGAAGAAAAATGTGGAAGGCCACATCTCTGTTTACTTGGAAATGGTTGGAGCTGATTCACTTCAGACTGGATTCGAAGTATATGTTAATTTCAGGTTCTTTTTACTTGATCAGAATAAGGGAATGTTCCTGGTTCTTCAAGATGCCAATAAAAAGGAAAAGTGTTTCCATGGGGTAATGCGTTATTCGGGATTTGATAGGCTTATCACTCTTAAATCGTTTACTGATGCTTCCAACGGATATGTCATTGATGATTCCTGTGTGATTGGAGCTGAGGTCTTTGTTTGTAAAGAAAGAAGAGCTCGCAAAGGAGAGTCAATATCGATGGTCAAGGTTGCTGTTATGTGCAAGCATGTTTGGAAGGTTGAGAACTTTTCAAAGTTAGGTGCTGACCCCTACAAATCAGAACCATTCATTGCCAGAGAACGGAATTGGAAGATAGTGCTCTATCCTAAGGGACATAAGAAAGGAAAGGGTACTCATATTTCTCTTTTCTTGGAATTGGATGATCCGGAAAAACTTTCTGGTTCCAAAGTATTTGCAGAGTTTTCCATGCGCATTGTAGATCAAATGCATGCCAAACATGAGTGCTTAAAAGCAAACAACTGGTTCAGTACCTCAACTCGGGATTTCGGTTGGCCTACCTTCCTTAAACTGGACACCTTCAGTCAGGCAGGTAATGGGTTTTTGGTGAAGGATGCTTGCATAGTAGAGGCCGATGTCACTATCCGTGGAACTGCAACAGCACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

313

Amino Acids

35.34

Weight (kDa)

8.88

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 155	1e-31	MATH domain
MATH	PF00917	39 - 157	3.8e-09	MATH domain
MATH_2	PF22486	179 - 303	1.2e-32	MATH domain
MATH	PF00917	184 - 305	3.7e-11	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
Acc36I	ACCTGC	1 cut(s)	851
AccIII	TCCGGA	1 cut(s)	697
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	105, 134
AcuI	CTGAAG	2 cut(s)	233, 835
AfaI	GTAC	2 cut(s)	664, 802
AfiI	CCNNNNNNNGG	3 cut(s)	612, 810, 841
AgsI	TTSAA	4 cut(s)	20, 140, 326, 564
AhlI	ACTAGT	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	5 cut(s)	56, 143, 239, 458, 488
AluI	AGCT	5 cut(s)	56, 143, 239, 458, 488
Alw21I	GWGCWC	3 cut(s)	171, 490, 633
AlwI	GGATC	1 cut(s)	689
Ama87I	CYCGRG	1 cut(s)	810
Aor13HI	TCCGGA	1 cut(s)	697
AoxI	GGCC	3 cut(s)	205, 824, 900
ApoI	RAATTY	2 cut(s)	105, 134
AspLEI	GCGC	1 cut(s)	744
AsuHPI	GGTGA	1 cut(s)	889
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	810
AxyI	CCTNAGG	1 cut(s)	639
BanII	GRGCYC	1 cut(s)	490
Bbv12I	GWGCWC	3 cut(s)	171, 490, 633
BbvCI	CCTCAGC	1 cut(s)	459
BccI	CCATC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	295
BcuI	ACTAGT	1 cut(s)	163
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	935
BfuAI	ACCTGC	1 cut(s)	851
BfuI	GTATCC	1 cut(s)	143
Bme1390I	CCNGG	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	810
BmiI	GGNNCC	1 cut(s)	715
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	319, 403, 874
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu14I	TTCGAA	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	355, 916
BsaWI	WCCGGW	1 cut(s)	697
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	3 cut(s)	612, 810, 841
Bse1I	ACTGG	3 cut(s)	259, 797, 846
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	697
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	355, 916
BseGI	GGATG	2 cut(s)	697, 889
BseLI	CCNNNNNNNGG	3 cut(s)	612, 810, 841
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	1 cut(s)	450
BseNI	ACTGG	3 cut(s)	259, 797, 846
BshFI	GGCC	3 cut(s)	207, 826, 902
BshVI	ATCGAT	1 cut(s)	509
BsiHKAI	GWGCWC	3 cut(s)	171, 490, 633
BsiHKCI	CYCGRG	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	612, 810, 841
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	3 cut(s)	207, 826, 902
BsoBI	CYCGRG	1 cut(s)	810
Bsp119I	TTCGAA	1 cut(s)	261
Bsp1286I	GDGCHC	3 cut(s)	171, 490, 633
Bsp13I	TCCGGA	1 cut(s)	697
Bsp143I	GATC	3 cut(s)	295, 694, 751
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	3 cut(s)	207, 826, 902
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	509
BspEI	TCCGGA	1 cut(s)	697
BspLI	GGNNCC	1 cut(s)	715
BspMI	ACCTGC	1 cut(s)	851
BspPI	GGATC	1 cut(s)	689
BspQI	GCTCTTC	1 cut(s)	478
BspT104I	TTCGAA	1 cut(s)	261
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	259, 797, 846
BssECI	CCNNGG	2 cut(s)	355, 916
BssMI	GATC	3 cut(s)	295, 694, 751
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	1 cut(s)	936
Bst6I	CTCTTC	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	4 cut(s)	490, 536, 762, 889
BstDEI	CTNAG	2 cut(s)	459, 639
BstDSI	CCRYGG	2 cut(s)	355, 916
BstF5I	GGATG	2 cut(s)	697, 889
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	3 cut(s)	298, 697, 754
BstMBI	GATC	3 cut(s)	295, 694, 751
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	542, 764
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	935
Bsu15I	ATCGAT	1 cut(s)	509
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	3 cut(s)	207, 826, 902
BsuTUI	ATCGAT	1 cut(s)	509
BtgI	CCRYGG	2 cut(s)	355, 916
BtsCI	GGATG	2 cut(s)	697, 889
BtsIMutI	CAGTG	2 cut(s)	117, 932
BveI	ACCTGC	1 cut(s)	851
Cac8I	GCNNGC	4 cut(s)	490, 536, 762, 889
CfoI	GCGC	1 cut(s)	744
ClaI	ATCGAT	1 cut(s)	509
Csp6I	GTAC	2 cut(s)	663, 801
CviAII	CATG	6 cut(s)	93, 356, 539, 739, 761, 770
CviQI	GTAC	2 cut(s)	663, 801
DdeI	CTNAG	2 cut(s)	459, 639
DpnI	GATC	3 cut(s)	297, 696, 753
DpnII	GATC	3 cut(s)	295, 694, 751
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	488
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	490
Eco32I	GATATC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	488
Eco57I	CTGAAG	2 cut(s)	233, 835
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	810
EcoICRI	GAGCTC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	762
EcoT38I	GRGCYC	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	6 cut(s)	96, 359, 542, 742, 764, 773
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	6 cut(s)	92, 355, 538, 738, 760, 769
FbaI	TGATCA	1 cut(s)	295
FokI	GGATG	2 cut(s)	704, 896
FriOI	GRGCYC	1 cut(s)	490
FspAI	RTGCGCAY	1 cut(s)	743
FspBI	CTAG	1 cut(s)	164
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	1 cut(s)	743
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	3 cut(s)	207, 826, 902
HapII	CCGG	1 cut(s)	698
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	6 cut(s)	96, 359, 542, 742, 764, 773
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	6 cut(s)	50, 125, 242, 258, 440, 500
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	1 cut(s)	889
Hpy166II	GTNNAC	3 cut(s)	115, 220, 408
Hpy188I	TCNGA	5 cut(s)	49, 75, 252, 300, 592
Hpy188III	TCNNGA	5 cut(s)	129, 326, 375, 698, 812
Hpy8I	GTNNAC	3 cut(s)	115, 220, 408
HpyAV	CCTTC	5 cut(s)	197, 541, 841, 859, 874
HpyCH4III	ACNGT	1 cut(s)	936
HpyCH4V	TGCA	5 cut(s)	534, 728, 760, 891, 926
HpyF3I	CTNAG	2 cut(s)	459, 639
Hsp92II	CATG	6 cut(s)	96, 359, 542, 742, 764, 773
HspAI	GCGC	1 cut(s)	742
Kpn2I	TCCGGA	1 cut(s)	697
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	3 cut(s)	295, 694, 751
LguI	GCTCTTC	1 cut(s)	478
LmnI	GCTCC	3 cut(s)	61, 236, 455
LweI	GCATC	3 cut(s)	319, 403, 874
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	3 cut(s)	297, 696, 753
MboI	GATC	3 cut(s)	295, 694, 751
MboII	GAAGA	4 cut(s)	202, 314, 495, 634
MhlI	GDGCHC	3 cut(s)	171, 490, 633
MluCI	AATT	5 cut(s)	105, 134, 274, 616, 686
MlyI	GAGTC	2 cut(s)	134, 509
MmeI	TCCRAC	3 cut(s)	83, 214, 444
MnlI	CCTC	4 cut(s)	140, 454, 814, 892
Mph1103I	ATGCAT	1 cut(s)	762
MroI	TCCGGA	1 cut(s)	697
MseI	TTAA	4 cut(s)	273, 399, 779, 837
MslI	CAYNNNNRTG	1 cut(s)	91
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	295, 694, 751
NlaIII	CATG	6 cut(s)	96, 359, 542, 742, 764, 773
NlaIV	GGNNCC	1 cut(s)	715
NmuCI	GTSAC	1 cut(s)	907
NsbI	TGCGCA	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	2 cut(s)	542, 764
NspV	TTCGAA	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	764
PciSI	GCTCTTC	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	50, 242, 258, 440
PleI	GAGTC	2 cut(s)	133, 508
PpsI	GAGTC	2 cut(s)	133, 508
Psp124BI	GAGCTC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	715
RsaI	GTAC	2 cut(s)	664, 802
RsaNI	GTAC	2 cut(s)	663, 801
RseI	CAYNNNNRTG	1 cut(s)	91
SacI	GAGCTC	1 cut(s)	490
SapI	GCTCTTC	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	273, 399, 779, 837
Sau3AI	GATC	3 cut(s)	295, 694, 751
SchI	GAGTC	2 cut(s)	134, 509
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	3 cut(s)	171, 490, 633
SfaNI	GCATC	3 cut(s)	319, 403, 874
SfcI	CTRYAG	1 cut(s)	935
SfuI	TTCGAA	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	163
SphI	GCATGC	1 cut(s)	764
Sse9I	AATT	5 cut(s)	105, 134, 274, 616, 686
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	490
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	1 cut(s)	936
TaqI	TCGA	3 cut(s)	35, 261, 509
TasI	AATT	5 cut(s)	105, 134, 274, 616, 686
TfiI	GAWTC	4 cut(s)	50, 242, 258, 440
Tru1I	TTAA	4 cut(s)	273, 399, 779, 837
Tru9I	TTAA	4 cut(s)	273, 399, 779, 837
TscAI	CASTG	2 cut(s)	117, 939
TseFI	GTSAC	1 cut(s)	907
Tsp45I	GTSAC	1 cut(s)	907
TspDTI	ATGAA	2 cut(s)	81, 589
TspGWI	ACGGA	3 cut(s)	438, 628, 905
TspRI	CASTG	2 cut(s)	117, 939
XapI	RAATTY	2 cut(s)	105, 134
XceI	RCATGY	2 cut(s)	542, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	1 cut(s)	164
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.