Rh4BG277400

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
45106318 .. 45107344
1027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG277400.1

Sequence Viewer

Length: 657 bp
ATGATCGACTTAGATGCTTTCGCAAAGGAAAATTGCTTTCATCGGGAAATGCTGCGCTCGCCTGGTTTTGATAGGCTTATGCCTCTTGAAGAGTTTACTAATGCCTCCAATGGGTATGTAGTTGATGACACCTGCGTGTTTGGTGCTGAGGTCTTTGTTTGTAACGAAAGAACAAAAGGCAAAAGAGAGCGTTTATTAACGACAAACAATGCAGTTATGTACAAGCAGGTTTGGAAGGTTGAGAACTTTTCAAAGCTAGATGATCCATTCTATAAGTCAGAACCATTCGTTGCTGGAAACCAGAAATGGGAGATACAGTTCTATCCCAAGGGAATTGCCCACGGAATGGGGACTCATCTTTCTCTTTACTTGGCATTATTTGATTTTAAACCAACTCCTCCTGTGTTCAAGATATTTGCAGAGTTTTGCCTGCGTATTGTAGATCGAAAGCATGCCAATCATAAGACATGGTCAGGTAAACACTGTTTTAGTGCCATGTCTTCCTCTTGGGGTTTGCCTAAGTTCATTAGTTTAAGCACTTTCAGTGAAGCGGACAAGGGGATGTTGATCAAGAATACTTGCATTCTGGAGGCTGAGGTCACCTGTCCATGGAATTGCTGGAGTACTATAGCCTTAAAAACTTGTCCTGAATCCTAA

Protein Analysis

218

Amino Acids

25.0

Weight (kDa)

7.55

Isoelectric Point (pI)

28.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 11 - 51 1.4e-06 MATH domain
MATH_2 PF22486 77 - 200 2.4e-28 MATH domain
MATH PF00917 80 - 201 5.1e-12 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 2 cut(s) 140, 217
AccB7I CCANNNNNTGG 1 cut(s) 346
AciI CCGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 257
AfaI GTAC 2 cut(s) 221, 625
AfiI CCNNNNNNNGG 4 cut(s) 111, 307, 346, 609
AgsI TTSAA 3 cut(s) 89, 252, 409
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 302, 334
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 52
AspLEI GCGC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 492
BbvCI CCTCAGC 2 cut(s) 147, 594
BbvI GCAGC 1 cut(s) 39
BcgI CGANNNNNNTGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 567
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 2 cut(s) 140, 217
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 492
BpmI CTGGAG 2 cut(s) 608, 640
Bpu10I CCTNAGC 2 cut(s) 147, 594
BsaBI GATNNNNATC 1 cut(s) 566
BsaJI CCNNGG 3 cut(s) 327, 340, 608
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 307, 346, 609
Bse8I GATNNNNATC 1 cut(s) 566
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 327, 340, 608
BseGI GGATG 1 cut(s) 567
BseJI GATNNNNATC 1 cut(s) 566
BseLI CCNNNNNNNGG 4 cut(s) 111, 307, 346, 609
BseMII CTCAG 2 cut(s) 138, 585
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 1 cut(s) 39
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 4 cut(s) 111, 307, 346, 609
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 582
Bsp1407I TGTACA 1 cut(s) 219
Bsp143I GATC 4 cut(s) 3, 262, 442, 567
Bsp19I CCATGG 1 cut(s) 608
BspACI CCGC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 139, 586
BspMI ACCTGC 2 cut(s) 140, 217
BspPI GGATC 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 219
BssECI CCNNGG 3 cut(s) 327, 340, 608
BssMI GATC 4 cut(s) 3, 262, 442, 567
BssT1I CCWWGG 2 cut(s) 327, 608
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 318, 485
Bst6I CTCTTC 1 cut(s) 84
BstAUI TGTACA 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 59, 431, 453
BstDEI CTNAG 4 cut(s) 10, 147, 519, 594
BstDSI CCRYGG 2 cut(s) 340, 608
BstEII GGTNACC 1 cut(s) 598
BstF5I GGATG 1 cut(s) 567
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 6, 265, 445, 570
BstMBI GATC 4 cut(s) 3, 262, 442, 567
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNI CCWGG 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 598
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 627
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 492
BtgI CCRYGG 2 cut(s) 340, 608
BtsCI GGATG 1 cut(s) 567
BtsIMutI CAGTG 2 cut(s) 481, 550
BveI ACCTGC 2 cut(s) 140, 217
Cac8I GCNNGC 3 cut(s) 59, 431, 453
CfoI GCGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 220, 624
CviAII CATG 4 cut(s) 452, 468, 496, 609
CviJI RGCY 4 cut(s) 76, 256, 593, 632
CviKI_1 RGCY 4 cut(s) 76, 256, 593, 632
CviQI GTAC 2 cut(s) 220, 624
DdeI CTNAG 4 cut(s) 10, 147, 519, 594
DpnI GATC 4 cut(s) 5, 264, 444, 569
DpnII GATC 4 cut(s) 3, 262, 442, 567
DraI TTTAAA 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Eco130I CCWWGG 2 cut(s) 327, 608
Eco91I GGTNACC 1 cut(s) 598
EcoO65I GGTNACC 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 327, 608
ErhI CCWWGG 2 cut(s) 327, 608
FaeI CATG 4 cut(s) 455, 471, 499, 612
FaqI GGGAC 1 cut(s) 364
FatI CATG 4 cut(s) 451, 467, 495, 608
FbaI TGATCA 1 cut(s) 567
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 574
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 56
GluI GCNGC 1 cut(s) 53
GsuI CTGGAG 2 cut(s) 608, 640
HhaI GCGC 1 cut(s) 57
Hin1II CATG 4 cut(s) 455, 471, 499, 612
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 2 cut(s) 352, 650
HphI GGTGA 1 cut(s) 592
Hpy166II GTNNAC 2 cut(s) 96, 479
Hpy188I TCNGA 1 cut(s) 280
Hpy188III TCNNGA 6 cut(s) 44, 86, 409, 571, 587, 647
Hpy8I GTNNAC 2 cut(s) 96, 479
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 318, 485
HpyCH4V TGCA 3 cut(s) 212, 419, 582
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 4 cut(s) 10, 147, 519, 594
Hsp92II CATG 4 cut(s) 455, 471, 499, 612
HspAI GCGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 567
Kzo9I GATC 4 cut(s) 3, 262, 442, 567
Lsp1109I GCAGC 1 cut(s) 39
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 161, 598
MalI GATC 4 cut(s) 5, 264, 444, 569
MboI GATC 4 cut(s) 3, 262, 442, 567
MboII GAAGA 2 cut(s) 101, 492
MluCI AATT 3 cut(s) 31, 333, 613
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 7 cut(s) 93, 115, 142, 408, 514, 583, 589
MseI TTAA 4 cut(s) 197, 387, 533, 635
MslI CAYNNNNRTG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 582
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 58
NcoI CCATGG 1 cut(s) 608
NdeII GATC 4 cut(s) 3, 262, 442, 567
NlaIII CATG 4 cut(s) 455, 471, 499, 612
NmuCI GTSAC 1 cut(s) 598
NspI RCATGY 1 cut(s) 455
OliI CACNNNNGTG 1 cut(s) 134
PaeI GCATGC 1 cut(s) 455
PaqCI CACCTGC 1 cut(s) 140
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 650
PflFI GACNNNGTC 1 cut(s) 469
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 61
PspEI GGTNACC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 61
PsyI GACNNNGTC 1 cut(s) 469
RsaI GTAC 2 cut(s) 221, 625
RsaNI GTAC 2 cut(s) 220, 624
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 4 cut(s) 197, 387, 533, 635
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 4 cut(s) 3, 262, 442, 567
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 63
SetI ASST 8 cut(s) 134, 153, 231, 240, 258, 478, 600, 605
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 627
SmiMI CAYNNNNRTG 1 cut(s) 134
SphI GCATGC 1 cut(s) 455
Sse9I AATT 3 cut(s) 31, 333, 613
SsiI CCGC 1 cut(s) 551
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 2 cut(s) 327, 608
TaaI ACNGT 2 cut(s) 318, 485
TaqI TCGA 2 cut(s) 6, 445
TasI AATT 3 cut(s) 31, 333, 613
TatI WGTACW 2 cut(s) 219, 623
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 4 cut(s) 197, 387, 533, 635
Tru9I TTAA 4 cut(s) 197, 387, 533, 635
TscAI CASTG 2 cut(s) 488, 550
TseFI GTSAC 1 cut(s) 598
TseI GCWGC 1 cut(s) 52
Tsp45I GTSAC 1 cut(s) 598
TspDTI ATGAA 2 cut(s) 29, 514
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 2 cut(s) 488, 550
Tth111I GACNNNGTC 1 cut(s) 469
Van91I CCANNNNNTGG 1 cut(s) 346
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 615
XspI CTAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.