Rw4G023510

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
49096200 .. 49099905
3706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G023510.1

Sequence Viewer

Length: 972 bp
ATGTGTCATTCTTTCCGAGCTGAAATCTTGCCATTAATTGTTTCTCTTCTAAGGATGTGCAAACCATTTCTAGATGCTACTCCAACTCATTACACTGTAAAAATAGAGTTATTTTCAAGGGTAAAGAATTTTTGTAAAGAGGATCCATATGAATCAAGAGAGTTTGAAGCTGGAGGATACAAATGGAAACTGGTACTCTACCCAGATGGAAACAAAAGAAGAAATGTGGACGGTCACATCTCTCTCTACTTGGAAATAGCTGGAACAAATTTATTTCAGCCTGGTTGGGAGGTACATGTTGATTTTAGATTGTTCTTGCTTGATCAGCATAAAAGAGTCTACTTGGTTTTTGAAGATGCTTCTACACAGAAAATGTGCTTCAATGGGGATATGCCTTGTGCGGCCGGTTTTGATAAGCTTATCCGCGTTAAAGATTTTACTGATGACTCCAACGGATATCTAGTTGATGACACGTGCATGTTTGGTGCTGATGTCTTTGTCTGTAAAGAAAGGAGAACAGGCAAAGGGGAGTGTCTATCAAGGATCCAGAATCCTTCAACGTACAAGTATGTTTGGAAAATTGATAATTTTTTAAAGACAGATGCCGTATGCCATTGTTCAGGAGCATTCAGTGCTGGAAATCAGAAATGGAAGATAGAACTCCATCCCAAGGGAATTAATATAGGAAAGGGTAGTCATGTTTCTCTGTTTTTTAAACTGGCTGATTCGGAAACCCTTCCTCCTGGCTCTAAAATATATGCAGACTGTACAGTACGCATCCAAGATCAAATTCATTTCAAGCATTATCATGGAAGAGGTAGTGGCAGTTTCCACGCTACAGACACATCTTGGGGTTGGTTTAAATTCATCAAACAAGACACTTTCAGTCAAGCTGGCAATGGGTTTTTGGTGAATGATACTTGCATAGTGGAGGCAGAGGTCACTGTACGTGGAATAACCAGAGCTCTTTAG

Protein Analysis

323

Amino Acids

36.82

Weight (kDa)

8.19

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 30 - 165 1.2e-32 MATH domain
MATH PF00917 39 - 166 2.8e-11 MATH domain
MATH_2 PF22486 189 - 314 6.4e-30 MATH domain
MATH PF00917 206 - 316 6.2e-10 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 426
AciI CCGC 2 cut(s) 401, 424
AclWI GGATC 4 cut(s) 137, 150, 538, 551
AcoI YGGCCR 1 cut(s) 402
AcsI RAATTY 4 cut(s) 127, 268, 789, 863
AcvI CACGTG 1 cut(s) 474
AfaI GTAC 6 cut(s) 195, 294, 563, 769, 774, 948
AfiI CCNNNNNNNGG 1 cut(s) 670
AflIII ACRYGT 2 cut(s) 295, 471
AgsI TTSAA 6 cut(s) 117, 167, 353, 382, 558, 799
AjnI CCWGG 2 cut(s) 280, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 774, 806
AluBI AGCT 6 cut(s) 20, 170, 260, 418, 893, 965
AluI AGCT 6 cut(s) 20, 170, 260, 418, 893, 965
Alw21I GWGCWC 1 cut(s) 967
AlwI GGATC 4 cut(s) 137, 150, 538, 551
AoxI GGCC 1 cut(s) 402
ApoI RAATTY 4 cut(s) 127, 268, 789, 863
AseI ATTAAT 2 cut(s) 35, 678
Asp700I GAANNNNTTC 1 cut(s) 735
AsuHPI GGTGA 1 cut(s) 922
BamHI GGATCC 2 cut(s) 142, 543
BanII GRGCYC 1 cut(s) 967
BbrPI CACGTG 1 cut(s) 474
Bbv12I GWGCWC 1 cut(s) 967
BccI CCATC 2 cut(s) 200, 672
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 2 cut(s) 282, 744
BciVI GTATCC 1 cut(s) 170
BclI TGATCA 1 cut(s) 322
BfaI CTAG 2 cut(s) 71, 461
BfmI CTRYAG 1 cut(s) 837
BfuI GTATCC 1 cut(s) 170
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 282, 744
BmiI GGNNCC 2 cut(s) 144, 545
BmrFI CCNGG 2 cut(s) 282, 744
BmsI GCATC 4 cut(s) 64, 346, 592, 786
BpmI CTGGAG 1 cut(s) 192
BsaAI YACGTR 2 cut(s) 474, 950
BsaJI CCNNGG 1 cut(s) 669
BsaXI ACNNNNNCTCC 2 cut(s) 724, 754
Bsc4I CCNNNNNNNGG 1 cut(s) 670
Bse118I RCCGGY 1 cut(s) 404
Bse1I ACTGG 2 cut(s) 195, 723
Bse3DI GCAATG 1 cut(s) 904
BseBI CCWGG 2 cut(s) 282, 744
BseDI CCNNGG 1 cut(s) 669
BseGI GGATG 3 cut(s) 60, 664, 777
BseLI CCNNNNNNNGG 1 cut(s) 670
BseMI GCAATG 1 cut(s) 904
BseNI ACTGG 2 cut(s) 195, 723
BseX3I CGGCCG 1 cut(s) 402
Bsh1236I CGCG 1 cut(s) 426
Bsh1285I CGRYCG 1 cut(s) 405
BshFI GGCC 1 cut(s) 404
BsiEI CGRYCG 1 cut(s) 405
BsiHKAI GWGCWC 1 cut(s) 967
BsiSI CCGG 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 670
BsmI GAATGC 1 cut(s) 626
BsnI GGCC 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 967
Bsp1407I TGTACA 1 cut(s) 767
Bsp143I GATC 4 cut(s) 142, 322, 543, 784
BspACI CCGC 2 cut(s) 401, 424
BspANI GGCC 1 cut(s) 404
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 144, 545
BspPI GGATC 4 cut(s) 137, 150, 538, 551
BsrDI GCAATG 1 cut(s) 904
BsrFI RCCGGY 1 cut(s) 404
BsrGI TGTACA 1 cut(s) 767
BsrI ACTGG 2 cut(s) 195, 723
BssAI RCCGGY 1 cut(s) 404
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 4 cut(s) 142, 322, 543, 784
BssT1I CCWWGG 1 cut(s) 669
Bst2UI CCWGG 2 cut(s) 282, 744
Bst4CI ACNGT 5 cut(s) 97, 233, 767, 772, 946
Bst6I CTCTTC 2 cut(s) 51, 808
BstAPI GCANNNNNTGC 1 cut(s) 632
BstAUI TGTACA 1 cut(s) 767
BstBAI YACGTR 2 cut(s) 474, 950
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 60, 664, 777
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 4 cut(s) 145, 325, 546, 787
BstMBI GATC 4 cut(s) 142, 322, 543, 784
BstMCI CGRYCG 1 cut(s) 405
BstMWI GCNNNNNNNGC 2 cut(s) 325, 632
BstNI CCWGG 2 cut(s) 282, 744
BstNSI RCATGY 2 cut(s) 299, 481
BstSCI CCNGG 2 cut(s) 280, 742
BstSFI CTRYAG 1 cut(s) 837
BstUI CGCG 1 cut(s) 426
BstX2I RGATCY 2 cut(s) 142, 543
BstYI RGATCY 2 cut(s) 142, 543
BstZI CGGCCG 1 cut(s) 402
BsuI GTATCC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 404
BtsCI GGATG 3 cut(s) 60, 664, 777
BtsIMutI CAGTG 3 cut(s) 93, 637, 942
Cac8I GCNNGC 1 cut(s) 895
Cfr10I RCCGGY 1 cut(s) 404
Csp6I GTAC 6 cut(s) 194, 293, 562, 768, 773, 947
CviAII CATG 4 cut(s) 296, 478, 698, 809
CviQI GTAC 6 cut(s) 194, 293, 562, 768, 773, 947
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 144, 324, 545, 786
DpnII GATC 4 cut(s) 142, 322, 543, 784
DraI TTTAAA 3 cut(s) 594, 715, 862
EaeI YGGCCR 1 cut(s) 402
EagI CGGCCG 1 cut(s) 402
Eam1104I CTCTTC 2 cut(s) 51, 808
EarI CTCTTC 2 cut(s) 51, 808
Ecl136II GAGCTC 1 cut(s) 965
EclXI CGGCCG 1 cut(s) 402
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 967
Eco32I GATATC 1 cut(s) 458
Eco52I CGGCCG 1 cut(s) 402
Eco53kI GAGCTC 1 cut(s) 965
Eco72I CACGTG 1 cut(s) 474
EcoICRI GAGCTC 1 cut(s) 965
EcoRII CCWGG 2 cut(s) 280, 742
EcoRV GATATC 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 967
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 4 cut(s) 299, 481, 701, 812
FatI CATG 4 cut(s) 295, 477, 697, 808
FauNDI CATATG 1 cut(s) 148
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 3 cut(s) 67, 651, 764
FriOI GRGCYC 1 cut(s) 967
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 2 cut(s) 71, 461
GluI GCNGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 404
HapII CCGG 1 cut(s) 405
Hin1II CATG 4 cut(s) 299, 481, 701, 812
HindIII AAGCTT 1 cut(s) 416
HinfI GANTC 5 cut(s) 152, 336, 446, 550, 725
HpaII CCGG 1 cut(s) 405
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 2 cut(s) 229, 340
Hpy188I TCNGA 3 cut(s) 17, 645, 730
Hpy188III TCNNGA 4 cut(s) 71, 156, 547, 621
Hpy8I GTNNAC 2 cut(s) 229, 340
HpyAV CCTTC 2 cut(s) 564, 746
HpyCH4III ACNGT 5 cut(s) 97, 233, 767, 772, 946
HpyCH4IV ACGT 3 cut(s) 473, 560, 949
HpyCH4V TGCA 4 cut(s) 60, 477, 761, 924
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 632
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 3 cut(s) 473, 560, 949
Hsp92II CATG 4 cut(s) 299, 481, 701, 812
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 4 cut(s) 142, 322, 543, 784
LmnI GCTCC 1 cut(s) 623
LweI GCATC 4 cut(s) 64, 346, 592, 786
MaeI CTAG 2 cut(s) 71, 461
MaeII ACGT 3 cut(s) 473, 560, 949
MaeIII GTNAC 2 cut(s) 233, 940
MalI GATC 4 cut(s) 144, 324, 545, 786
MboI GATC 4 cut(s) 142, 322, 543, 784
MboII GAAGA 5 cut(s) 38, 231, 365, 664, 825
MflI RGATCY 2 cut(s) 142, 543
MhlI GDGCHC 1 cut(s) 967
MluCI AATT 8 cut(s) 36, 127, 268, 579, 586, 675, 789, 863
MlyI GAGTC 2 cut(s) 345, 440
MmeI TCCRAC 2 cut(s) 107, 474
MnlI CCTC 7 cut(s) 133, 167, 283, 750, 809, 925, 931
MroXI GAANNNNTTC 1 cut(s) 735
MseI TTAA 6 cut(s) 35, 429, 593, 678, 714, 861
MslI CAYNNNNRTG 2 cut(s) 476, 807
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 282, 744
Mva1269I GAATGC 1 cut(s) 626
MvaI CCWGG 2 cut(s) 282, 744
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 325, 632
NdeI CATATG 1 cut(s) 148
NdeII GATC 4 cut(s) 142, 322, 543, 784
NlaIII CATG 4 cut(s) 299, 481, 701, 812
NlaIV GGNNCC 2 cut(s) 144, 545
NmuCI GTSAC 2 cut(s) 233, 940
NspI RCATGY 2 cut(s) 299, 481
PciI ACATGT 1 cut(s) 295
PctI GAATGC 1 cut(s) 626
PdmI GAANNNNTTC 1 cut(s) 735
PfeI GAWTC 3 cut(s) 152, 550, 725
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 2 cut(s) 344, 440
PmaCI CACGTG 1 cut(s) 474
PmlI CACGTG 1 cut(s) 474
PpsI GAGTC 2 cut(s) 344, 440
Ppu21I YACGTR 2 cut(s) 474, 950
PscI ACATGT 1 cut(s) 295
PshBI ATTAAT 2 cut(s) 35, 678
Psp124BI GAGCTC 1 cut(s) 967
Psp6I CCWGG 2 cut(s) 280, 742
PspCI CACGTG 1 cut(s) 474
PspGI CCWGG 2 cut(s) 280, 742
PspN4I GGNNCC 2 cut(s) 144, 545
PsuI RGATCY 2 cut(s) 142, 543
RsaI GTAC 6 cut(s) 195, 294, 563, 769, 774, 948
RsaNI GTAC 6 cut(s) 194, 293, 562, 768, 773, 947
RseI CAYNNNNRTG 2 cut(s) 476, 807
SacI GAGCTC 1 cut(s) 967
SaqAI TTAA 6 cut(s) 35, 429, 593, 678, 714, 861
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 4 cut(s) 142, 322, 543, 784
SchI GAGTC 2 cut(s) 345, 440
ScrFI CCNGG 2 cut(s) 282, 744
SduI GDGCHC 1 cut(s) 967
SfaNI GCATC 4 cut(s) 64, 346, 592, 786
SfcI CTRYAG 1 cut(s) 837
SmiMI CAYNNNNRTG 2 cut(s) 476, 807
Sse9I AATT 8 cut(s) 36, 127, 268, 579, 586, 675, 789, 863
SsiI CCGC 2 cut(s) 401, 424
SspMI CTAG 2 cut(s) 71, 461
SstI GAGCTC 1 cut(s) 967
StyD4I CCNGG 2 cut(s) 280, 742
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 5 cut(s) 97, 233, 767, 772, 946
TaiI ACGT 3 cut(s) 476, 563, 952
TasI AATT 8 cut(s) 36, 127, 268, 579, 586, 675, 789, 863
TatI WGTACW 1 cut(s) 767
TauI GCSGC 1 cut(s) 404
TfiI GAWTC 3 cut(s) 152, 550, 725
Tru1I TTAA 6 cut(s) 35, 429, 593, 678, 714, 861
Tru9I TTAA 6 cut(s) 35, 429, 593, 678, 714, 861
TscAI CASTG 3 cut(s) 100, 637, 949
TseFI GTSAC 2 cut(s) 233, 940
Tsp45I GTSAC 2 cut(s) 233, 940
TspDTI ATGAA 3 cut(s) 165, 782, 856
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 3 cut(s) 100, 637, 949
VspI ATTAAT 2 cut(s) 35, 678
XapI RAATTY 4 cut(s) 127, 268, 789, 863
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 2 cut(s) 299, 481
XmiI GTMKAC 1 cut(s) 339
XmnI GAANNNNTTC 1 cut(s) 735
XspI CTAG 2 cut(s) 71, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.