Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

37228717 .. 37229679

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0214800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTGTTCAGAAATGAGGGTTGAAGTGATCGACAAGGAAACAATTACACCATCATCTCCTACACCTCACCACCTTACAACTTCCAACCTTTCTGTTTTTGATCAGTTTTTACCGGACTTGTATGTCCCCCTACTTCTCTTCTATCCCAACAATAGTACTACTAATCACAAGGGCAATATGGTTGATCACCACTACTCATTGGTTACCGAAAGATCCAAGCTTCTGAAAACTTCATTATCTGAAGCCCTCAGCCGCTTCTATCCTTTCGCAGGAAGAATATTTAGCCACAACAATATTCTTTCGATCTGTTGCAATGACCATGGTGCGGCATTTATCCAAACCCGTGTCAACCGTCCCATATCAAAGGTTTTGGAAAAGCCCCATGCTGGGATGCTAAATCAATTACTTCCAAATGACATAGAATCAACATTTGAAAGCACAGGCTATCTCCTACTAGTCCAAGCCAACTTCTTCGAATGTGGCGGAATTGCAATTGGGGTTAGCATTTCACATAAGAACGCAGACGGCTTCACACTCGGAACATTTATCCGTAGCTGGGCAGCAATGGGCCTTGGCACTGATGTAGTAGCTCTTCCAACTGCAGAATTTGGTGTTGCAGCATCTGTTTACCCACCACAAGATTTATTCATCAAGTCATTGCAAACTTCTGGGGAATATGTTTATGAAGATTGTGTAAAAAGAAGATTTGTTTTTGATGCCTCAAATATTCTACGTCTCAAGTCTAAAGCCGCCAGTGCCATCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAGCGCTTATTTGGAAATGTGCAATGGACGTATCAAGATCAAACTTAGGTGTTACAAGGCCAGCAATGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGCGCATCCCACTTTAATGGGAAATCTTTTAGGATGTGTCCCAAACAAAGACACAAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

318

Amino Acids

35.08

Weight (kDa)

8.63

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	5 - 308	1.2e-56	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	122
AciI	CCGC	5 cut(s)	253, 326, 483, 750, 883
AclWI	GGATC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	1 cut(s)	157
AfeI	AGCGCT	1 cut(s)	798
AfiI	CCNNNNNNNGG	5 cut(s)	269, 325, 386, 387, 556
AgsI	TTSAA	3 cut(s)	23, 434, 785
AhlI	ACTAGT	1 cut(s)	454
AluBI	AGCT	3 cut(s)	220, 555, 590
AluI	AGCT	3 cut(s)	220, 555, 590
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	1 cut(s)	207
AlwNI	CAGNNNCTG	1 cut(s)	623
Aor51HI	AGCGCT	1 cut(s)	798
AoxI	GGCC	2 cut(s)	568, 851
ApeKI	GCWGC	3 cut(s)	560, 617, 872
ApoI	RAATTY	1 cut(s)	605
AspLEI	GCGC	2 cut(s)	799, 898
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	59, 179
AsuII	TTCGAA	1 cut(s)	474
BarI	GAAGNNNNNNTAC	2 cut(s)	576, 608
BauI	CACGAG	1 cut(s)	777
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	3 cut(s)	572, 629, 884
BccI	CCATC	2 cut(s)	58, 767
BceAI	ACGGC	1 cut(s)	541
BclI	TGATCA	2 cut(s)	100, 184
BcoDI	GTCTC	1 cut(s)	740
BcuI	ACTAGT	1 cut(s)	454
BfaI	CTAG	2 cut(s)	455, 869
BfmI	CTRYAG	1 cut(s)	600
BfoI	RGCGCY	1 cut(s)	800
BisI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 873
BlsI	GCNGC	6 cut(s)	254, 328, 562, 619, 751, 874
BmcAI	AGTACT	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	568
BmsI	GCATC	4 cut(s)	381, 629, 706, 907
Bpu10I	CCTNAGC	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	722
BsaJI	CCNNGG	2 cut(s)	319, 571
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	5 cut(s)	269, 325, 386, 387, 556
Bse1I	ACTGG	1 cut(s)	753
Bse3DI	GCAATG	5 cut(s)	319, 570, 656, 822, 864
BseDI	CCNNGG	2 cut(s)	319, 571
BseGI	GGATG	3 cut(s)	396, 898, 932
BseLI	CCNNNNNNNGG	5 cut(s)	269, 325, 386, 387, 556
BseMI	GCAATG	5 cut(s)	319, 570, 656, 822, 864
BseMII	CTCAG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	753
BseXI	GCAGC	3 cut(s)	572, 629, 884
BseYI	CCCAGC	2 cut(s)	386, 555
BshFI	GGCC	2 cut(s)	570, 853
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	3 cut(s)	110, 339, 917
BslI	CCNNNNNNNGG	5 cut(s)	269, 325, 386, 387, 556
BsmAI	GTCTC	1 cut(s)	740
BsmBI	CGTCTC	1 cut(s)	740
BsmFI	GGGAC	3 cut(s)	110, 339, 917
BsnI	GGCC	2 cut(s)	570, 853
Bsp119I	TTCGAA	1 cut(s)	474
Bsp143I	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
Bsp19I	CCATGG	1 cut(s)	319
BspACI	CCGC	5 cut(s)	253, 326, 483, 750, 883
BspANI	GGCC	2 cut(s)	570, 853
BspCNI	CTCAG	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	604
BspPI	GGATC	1 cut(s)	207
BspQI	GCTCTTC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	474
BsrDI	GCAATG	5 cut(s)	319, 570, 656, 822, 864
BsrI	ACTGG	1 cut(s)	753
BssECI	CCNNGG	2 cut(s)	319, 571
BssMI	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	2 cut(s)	319, 571
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	1 cut(s)	353
Bst6I	CTCTTC	2 cut(s)	143, 597
BstBI	TTCGAA	1 cut(s)	474
BstC8I	GCNNGC	1 cut(s)	855
BstDEI	CTNAG	2 cut(s)	248, 838
BstDSI	CCRYGG	1 cut(s)	319
BstEII	GGTNACC	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	3 cut(s)	396, 898, 932
BstH2I	RGCGCY	1 cut(s)	800
BstHHI	GCGC	2 cut(s)	799, 898
BstKTI	GATC	6 cut(s)	30, 103, 187, 215, 306, 833
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
BstMWI	GCNNNNNNNGC	2 cut(s)	755, 859
BstNSI	RCATGY	1 cut(s)	883
BstPI	GGTNACC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	572, 629, 884
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	910
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	2 cut(s)	570, 853
BtgI	CCRYGG	1 cut(s)	319
BtsCI	GGATG	3 cut(s)	396, 898, 932
BtsIMutI	CAGTG	2 cut(s)	576, 760
Cac8I	GCNNGC	1 cut(s)	855
CaiI	CAGNNNCTG	1 cut(s)	623
CfoI	GCGC	2 cut(s)	799, 898
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	3 cut(s)	320, 383, 880
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	248, 838
DpnI	GATC	6 cut(s)	29, 102, 186, 214, 305, 832
DpnII	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	2 cut(s)	143, 597
EarI	CTCTTC	2 cut(s)	143, 597
EciI	GGCGGA	1 cut(s)	498
Eco130I	CCWWGG	2 cut(s)	319, 571
Eco47III	AGCGCT	1 cut(s)	798
Eco57I	CTGAAG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoO65I	GGTNACC	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	319, 571
ErhI	CCWWGG	2 cut(s)	319, 571
Esp3I	CGTCTC	1 cut(s)	740
FaeI	CATG	3 cut(s)	323, 386, 883
FaqI	GGGAC	3 cut(s)	110, 339, 917
FatI	CATG	3 cut(s)	319, 382, 879
FbaI	TGATCA	2 cut(s)	100, 184
Fnu4HI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 873
FokI	GGATG	3 cut(s)	403, 885, 939
Fsp4HI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 873
FspBI	CTAG	2 cut(s)	455, 869
GlaI	GCGC	2 cut(s)	798, 897
GluI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 873
GsaI	CCCAGC	2 cut(s)	390, 559
HaeII	RGCGCY	1 cut(s)	800
HaeIII	GGCC	2 cut(s)	570, 853
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	2 cut(s)	799, 898
Hin1II	CATG	3 cut(s)	323, 386, 883
Hin6I	GCGC	2 cut(s)	797, 896
HinP1I	GCGC	2 cut(s)	797, 896
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	59, 179
Hpy166II	GTNNAC	2 cut(s)	349, 628
Hpy188I	TCNGA	4 cut(s)	10, 225, 241, 539
Hpy188III	TCNNGA	1 cut(s)	828
Hpy8I	GTNNAC	2 cut(s)	349, 628
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	733, 822
HpyCH4V	TGCA	6 cut(s)	312, 491, 602, 617, 661, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	755, 859
HpyF3I	CTNAG	2 cut(s)	248, 838
HpySE526I	ACGT	2 cut(s)	733, 822
Hsp92II	CATG	3 cut(s)	323, 386, 883
HspAI	GCGC	2 cut(s)	797, 896
Ksp22I	TGATCA	2 cut(s)	100, 184
Kzo9I	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
LguI	GCTCTTC	1 cut(s)	597
LpnPI	CCDG	8 cut(s)	126, 255, 372, 426, 541, 654, 766, 867
Lsp1109I	GCAGC	3 cut(s)	572, 629, 884
LweI	GCATC	4 cut(s)	381, 629, 706, 907
MaeI	CTAG	2 cut(s)	455, 869
MaeII	ACGT	2 cut(s)	733, 822
MaeIII	GTNAC	2 cut(s)	202, 844
MalI	GATC	6 cut(s)	29, 102, 186, 214, 305, 832
MboI	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
MboII	GAAGA	6 cut(s)	130, 285, 463, 584, 698, 714
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	212
MluCI	AATT	5 cut(s)	42, 401, 486, 492, 605
MmeI	TCCRAC	3 cut(s)	108, 620, 797
MnlI	CCTC	4 cut(s)	9, 75, 257, 730
MseI	TTAA	1 cut(s)	908
MslI	CAYNNNNRTG	1 cut(s)	908
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	755, 859
NcoI	CCATGG	1 cut(s)	319
NdeII	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
NlaIII	CATG	3 cut(s)	323, 386, 883
NspI	RCATGY	1 cut(s)	883
NspV	TTCGAA	1 cut(s)	474
PciSI	GCTCTTC	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	422
PkrI	GCNGC	6 cut(s)	254, 328, 562, 619, 751, 874
PspEI	GGTNACC	1 cut(s)	202
PspFI	CCCAGC	2 cut(s)	386, 555
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	623
PsuI	RGATCY	1 cut(s)	212
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	908
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	908
SatI	GCNGC	6 cut(s)	253, 327, 561, 618, 750, 873
Sau3AI	GATC	6 cut(s)	27, 100, 184, 212, 303, 830
Sau96I	GGNCC	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	157
SfaNI	GCATC	4 cut(s)	381, 629, 706, 907
SfcI	CTRYAG	1 cut(s)	600
SfuI	TTCGAA	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	454
Sse9I	AATT	5 cut(s)	42, 401, 486, 492, 605
SsiI	CCGC	5 cut(s)	253, 326, 483, 750, 883
SspI	AATATT	3 cut(s)	279, 295, 727
SspMI	CTAG	2 cut(s)	455, 869
StyI	CCWWGG	2 cut(s)	319, 571
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	736, 825
TaqI	TCGA	3 cut(s)	30, 302, 474
TasI	AATT	5 cut(s)	42, 401, 486, 492, 605
TatI	WGTACW	1 cut(s)	155
TauI	GCSGC	3 cut(s)	255, 329, 752
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	908
Tru9I	TTAA	1 cut(s)	908
TscAI	CASTG	2 cut(s)	583, 760
TseI	GCWGC	3 cut(s)	560, 617, 872
TspDTI	ATGAA	3 cut(s)	222, 637, 699
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	2 cut(s)	583, 760
XagI	CCTNNNNNAGG	1 cut(s)	267
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	883
XspI	CTAG	2 cut(s)	455, 869
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.