Rw4G024290

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
50140197 .. 50145818
5622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024290.1

Sequence Viewer

Length: 1023 bp
ATGGCTATCCTTAACTCGGACCAAGATGGCGTTTTCAGATCACTTTCAGATTCACTCCCAACTCATTGCACTCTAAATATAGAGTCGTTTTCGTTGCTAGCTGAATATCATGGAGTCAGTGGATATGAATCAAAAGAGTTCGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTACAAAGCAGAAGTGCTTTCACGCAGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATCCGTCTTCAAGAATTTACTGATGTTTCTAATGGATATCTCATCGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACTGGCCAGGGAGAGTGTATATCAAGGATAAAGAGCCCTCGTATGTACAAGCATGTTTGGAAACTTGAAAAATTTTCAAAGTTGAACGCTCAGTTCTACCACTCAAAACAATTCAGTGCAGAAGGACTAAACTGGATTATAGTACTCTATCCCGTGGGAAATCGCGAGGGGAAAGATTCTCATCTTTCTCTCTACTTGGGATTGGCTGATAAACAAACAACTCCTACTGTCACTAGAGTATATGCAGAGTTTTCCTTACGCATAGTAAATCAAAACCGTGCCAGCCATCAATCTGTAAATTCATTCCACGGCCCACGGGCTGATTTACGTCGTTTTTTGAAGAACGATACTTTCTCAGTGGAAGCAGAGATCACTGTTCTTGGGATTGCTAAAGAACCCCCAGAGGCAGAGGACATTGTCCATACAACTGCGGAGGAGGGTTCATGCAGGTTCCCCTTCAATTCGTCTTTACTTCTCATGCCCTTGTCCACCTTCGTCATTGTGCTCAATCTACTTCGGTTGGCCAGGTAG

Protein Analysis

340

Amino Acids

38.5

Weight (kDa)

6.84

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 22 - 157 9e-31 MATH domain
MATH PF00917 40 - 159 1.2e-11 MATH domain
MATH_2 PF22486 181 - 263 3.9e-19 MATH domain
MATH PF00917 188 - 269 1.1e-06 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 230
Acc36I ACCTGC 1 cut(s) 930
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 657
AciI CCGC 1 cut(s) 923
AcoI YGGCCR 2 cut(s) 496, 1014
AcsI RAATTY 3 cut(s) 410, 563, 790
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 4 cut(s) 176, 317, 539, 636
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 7 cut(s) 329, 407, 560, 570, 577, 832, 952
AjnI CCWGG 2 cut(s) 498, 1016
AluBI AGCT 3 cut(s) 101, 394, 464
AluI AGCT 3 cut(s) 101, 394, 464
Alw21I GWGCWC 1 cut(s) 999
AoxI GGCC 3 cut(s) 496, 802, 1014
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 3 cut(s) 410, 563, 790
AspLEI GCGC 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 19, 803
AsuII TTCGAA 1 cut(s) 141
AsuNHI GCTAGC 1 cut(s) 97
AvaII GGWCC 1 cut(s) 19
BalI TGGCCA 2 cut(s) 498, 1016
BanII GRGCYC 1 cut(s) 530
BbsI GAAGAC 2 cut(s) 213, 395
Bbv12I GWGCWC 1 cut(s) 999
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 374
BccI CCATC 2 cut(s) 20, 786
BceAI ACGGC 1 cut(s) 817
BciT130I CCWGG 2 cut(s) 500, 1018
BciVI GTATCC 1 cut(s) 146
BclI TGATCA 1 cut(s) 298
BfaI CTAG 2 cut(s) 98, 726
BfuAI ACCTGC 1 cut(s) 930
BfuI GTATCC 1 cut(s) 146
BisI GCNGC 1 cut(s) 363
BlsI GCNGC 1 cut(s) 364
BmcAI AGTACT 1 cut(s) 636
Bme1390I CCNGG 2 cut(s) 500, 1018
Bme18I GGWCC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 19, 803
BmiI GGNNCC 1 cut(s) 944
BmrFI CCNGG 2 cut(s) 500, 1018
BmsI GCATC 1 cut(s) 322
BmtI GCTAGC 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 213, 395
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 141
Bsa29I ATCGAT 1 cut(s) 441
BsaBI GATNNNNATC 2 cut(s) 127, 672
BsaJI CCNNGG 4 cut(s) 499, 645, 799, 806
BsaXI ACNNNNNCTCC 4 cut(s) 258, 288, 453, 483
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 4 cut(s) 171, 262, 499, 629
Bse3DI GCAATG 1 cut(s) 64
Bse8I GATNNNNATC 2 cut(s) 127, 672
BseBI CCWGG 2 cut(s) 500, 1018
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 4 cut(s) 499, 645, 799, 806
BseJI GATNNNNATC 2 cut(s) 127, 672
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 3 cut(s) 456, 596, 861
BseNI ACTGG 4 cut(s) 171, 262, 499, 629
BseRI GAGGAG 1 cut(s) 941
BseXI GCAGC 1 cut(s) 374
BsgI GTGCAG 1 cut(s) 630
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 3 cut(s) 498, 804, 1016
BshVI ATCGAT 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 999
BsiSI CCGG 2 cut(s) 147, 237
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 3 cut(s) 498, 804, 1016
Bsp119I TTCGAA 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 530, 999
Bsp1407I TGTACA 1 cut(s) 537
Bsp143I GATC 3 cut(s) 38, 298, 861
Bsp68I TCGCGA 1 cut(s) 657
BspACI CCGC 1 cut(s) 923
BspANI GGCC 3 cut(s) 498, 804, 1016
BspCNI CTCAG 3 cut(s) 457, 595, 860
BspDI ATCGAT 1 cut(s) 441
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 1 cut(s) 944
BspMI ACCTGC 1 cut(s) 930
BspOI GCTAGC 1 cut(s) 101
BspT104I TTCGAA 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 64
BsrGI TGTACA 1 cut(s) 537
BsrI ACTGG 4 cut(s) 171, 262, 499, 629
BssECI CCNNGG 4 cut(s) 499, 645, 799, 806
BssMI GATC 3 cut(s) 38, 298, 861
Bst2UI CCWGG 2 cut(s) 500, 1018
Bst4CI ACNGT 3 cut(s) 721, 770, 868
BstAUI TGTACA 1 cut(s) 537
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 99, 775
BstDEI CTNAG 3 cut(s) 465, 582, 847
BstDSI CCRYGG 3 cut(s) 645, 799, 806
BstFNI CGCG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 3 cut(s) 41, 301, 864
BstMBI GATC 3 cut(s) 38, 298, 861
BstNI CCWGG 2 cut(s) 500, 1018
BstNSI RCATGY 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 498, 1016
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 2 cut(s) 213, 395
Bsu15I ATCGAT 1 cut(s) 441
BsuI GTATCC 1 cut(s) 146
BsuRI GGCC 3 cut(s) 498, 804, 1016
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 3 cut(s) 645, 799, 806
BtsIMutI CAGTG 4 cut(s) 124, 613, 855, 864
BtuMI TCGCGA 1 cut(s) 657
BveI ACCTGC 1 cut(s) 930
Cac8I GCNNGC 2 cut(s) 99, 775
CfoI GCGC 1 cut(s) 231
Cfr13I GGNCC 2 cut(s) 19, 803
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 4 cut(s) 175, 316, 538, 635
CviAII CATG 5 cut(s) 110, 377, 545, 936, 970
CviQI GTAC 4 cut(s) 175, 316, 538, 635
DdeI CTNAG 3 cut(s) 465, 582, 847
DpnI GATC 3 cut(s) 40, 300, 863
DpnII GATC 3 cut(s) 38, 298, 861
EaeI YGGCCR 2 cut(s) 496, 1014
Eco24I GRGCYC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 498, 1016
EcoRV GATATC 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 530
FaeI CATG 5 cut(s) 113, 380, 548, 939, 973
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FatI CATG 5 cut(s) 109, 376, 544, 935, 969
FauNDI CATATG 1 cut(s) 158
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 2 cut(s) 98, 726
FspI TGCGCA 1 cut(s) 230
GlaI GCGC 1 cut(s) 230
GluI GCNGC 1 cut(s) 363
HaeIII GGCC 3 cut(s) 498, 804, 1016
HapII CCGG 2 cut(s) 147, 237
HhaI GCGC 1 cut(s) 231
Hin1II CATG 5 cut(s) 113, 380, 548, 939, 973
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 6 cut(s) 50, 83, 114, 128, 245, 668
HpaII CCGG 2 cut(s) 147, 237
Hpy166II GTNNAC 2 cut(s) 223, 981
Hpy188I TCNGA 5 cut(s) 19, 38, 49, 255, 303
Hpy188III TCNNGA 3 cut(s) 326, 407, 656
Hpy8I GTNNAC 2 cut(s) 223, 981
Hpy99I CGWCG 1 cut(s) 825
HpyAV CCTTC 3 cut(s) 608, 958, 994
HpyCH4III ACNGT 3 cut(s) 721, 770, 868
HpyCH4IV ACGT 1 cut(s) 820
HpyCH4V TGCA 5 cut(s) 69, 480, 611, 737, 939
HpyF3I CTNAG 3 cut(s) 465, 582, 847
HpySE526I ACGT 1 cut(s) 820
Hsp92II CATG 5 cut(s) 113, 380, 548, 939, 973
HspAI GCGC 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 38, 298, 861
LmnI GCTCC 1 cut(s) 461
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 322
MaeI CTAG 2 cut(s) 98, 726
MaeII ACGT 1 cut(s) 820
MaeIII GTNAC 1 cut(s) 721
MalI GATC 3 cut(s) 40, 300, 863
MboI GATC 3 cut(s) 38, 298, 861
MboII GAAGA 7 cut(s) 205, 208, 218, 254, 341, 395, 844
MhlI GDGCHC 2 cut(s) 530, 999
MlsI TGGCCA 2 cut(s) 498, 1016
MluCI AATT 5 cut(s) 410, 563, 602, 790, 952
MluNI TGGCCA 2 cut(s) 498, 1016
MlyI GAGTC 2 cut(s) 92, 123
MnlI CCTC 8 cut(s) 143, 460, 540, 652, 889, 895, 919, 922
Mox20I TGGCCA 2 cut(s) 498, 1016
MscI TGGCCA 2 cut(s) 498, 1016
MseI TTAA 1 cut(s) 12
Msp20I TGGCCA 2 cut(s) 498, 1016
MspI CCGG 2 cut(s) 147, 237
MspR9I CCNGG 2 cut(s) 500, 1018
MvaI CCWGG 2 cut(s) 500, 1018
MvnI CGCG 1 cut(s) 657
NdeI CATATG 1 cut(s) 158
NdeII GATC 3 cut(s) 38, 298, 861
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 5 cut(s) 113, 380, 548, 939, 973
NlaIV GGNNCC 1 cut(s) 944
NmuCI GTSAC 1 cut(s) 721
NruI TCGCGA 1 cut(s) 657
NsbI TGCGCA 1 cut(s) 230
NspI RCATGY 1 cut(s) 548
NspV TTCGAA 1 cut(s) 141
PfeI GAWTC 4 cut(s) 50, 128, 245, 668
PflFI GACNNNGTC 1 cut(s) 908
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 2 cut(s) 91, 122
PpsI GAGTC 2 cut(s) 91, 122
Psp6I CCWGG 2 cut(s) 498, 1016
PspGI CCWGG 2 cut(s) 498, 1016
PspN4I GGNNCC 1 cut(s) 944
PspPI GGNCC 2 cut(s) 19, 803
PsyI GACNNNGTC 1 cut(s) 908
RruI TCGCGA 1 cut(s) 657
RsaI GTAC 4 cut(s) 176, 317, 539, 636
RsaNI GTAC 4 cut(s) 175, 316, 538, 635
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 3 cut(s) 38, 298, 861
Sau96I GGNCC 2 cut(s) 19, 803
ScaI AGTACT 1 cut(s) 636
SchI GAGTC 2 cut(s) 92, 123
ScrFI CCNGG 2 cut(s) 500, 1018
SduI GDGCHC 2 cut(s) 530, 999
SetI ASST 9 cut(s) 103, 385, 396, 466, 471, 823, 944, 986, 1022
SfaNI GCATC 1 cut(s) 322
SfuI TTCGAA 1 cut(s) 141
SinI GGWCC 1 cut(s) 19
Sse9I AATT 5 cut(s) 410, 563, 602, 790, 952
SsiI CCGC 1 cut(s) 923
SspMI CTAG 2 cut(s) 98, 726
StyD4I CCNGG 2 cut(s) 498, 1016
TaaI ACNGT 3 cut(s) 721, 770, 868
TaiI ACGT 1 cut(s) 823
TaqI TCGA 2 cut(s) 141, 441
TasI AATT 5 cut(s) 410, 563, 602, 790, 952
TatI WGTACW 3 cut(s) 315, 537, 634
TfiI GAWTC 4 cut(s) 50, 128, 245, 668
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 4 cut(s) 124, 613, 855, 871
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 4 cut(s) 141, 365, 783, 924
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 4 cut(s) 124, 613, 855, 871
Tth111I GACNNNGTC 1 cut(s) 908
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 3 cut(s) 410, 563, 790
XceI RCATGY 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 222
XspI CTAG 2 cut(s) 98, 726
ZrmI AGTACT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.