Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000953.1

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

36299 .. 38112

Gene Structure 1814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000953.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggcaaaccttaacttggaaaaagatggggttttgagatcgttttcagattcaccgccaactcattactccgtagaaatacagtttttttcgttgctgattgaaaagtactcagaggatggatatgaatcgaaggagtttgaagctggagggtacaaatggaaactggtgtttcacccaaatggaaacaaaaagaagaatgtaaaagaccacatctccctctacttggcaatagctggaacagattcactagatagtagttgggaagtatatgttgatttcagattgtttctgcttgatcagaataagggaaactacttggtttttgaagatgctttaacaaagaagaaatgctttcatggggcaatgcgtagtgcaggtttcgataaacttatccctcttgaagattttattgatttttccaatggatttctagtggacgacacatgtgtgtttggagccgaggtctttgtttgtaaagaaagaagaacaggcaaaggcgagtgcctagcaaggatgaaggaagcctctgtatgcaaacatgtttggaaagttgagaaattttcatctttaggtgctgaattttatgactctgaaccgttcactgctggggactataattggaagataaagctgtatcctgatggatgtggtgaaggcaagggtagtcatctttctctgtttttggaattggctagtcccataaccctcccccctggctctggactatttgtggagtatagatttcgcatcctagatcaaattcatcatcagcagcatccttctagtggtaaggactggttccgtggcagtactccagcttggggttggcttcaattcattgaacaagaaactttcaggcaggcagacaaggggtttttgaagaatgatgcttgcatagtggaagcagaggtgaccgtccatggaatttctaaagcactatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

314

Amino Acids

35.66

Weight (kDa)

5.73

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	368
AciI	CCGC	1 cut(s)	56
AcsI	RAATTY	4 cut(s)	560, 581, 762, 927
AfaI	GTAC	3 cut(s)	110, 155, 814
AfiI	CCNNNNNNNGG	5 cut(s)	16, 226, 722, 788, 824
AflIII	ACRYGT	2 cut(s)	446, 541
AgsI	TTSAA	7 cut(s)	104, 143, 329, 404, 836, 845, 883
AjnI	CCWGG	1 cut(s)	715
AleI	CACNNNNGTG	1 cut(s)	449
AluBI	AGCT	4 cut(s)	146, 236, 634, 821
AluI	AGCT	4 cut(s)	146, 236, 634, 821
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	4 cut(s)	560, 581, 762, 927
Asp700I	GAANNNNTTC	1 cut(s)	244
AsuHPI	GGTGA	4 cut(s)	45, 167, 665, 925
BbvI	GCAGC	1 cut(s)	787
BccI	CCATC	3 cut(s)	20, 113, 638
BciT130I	CCWGG	1 cut(s)	717
BciVI	GTATCC	1 cut(s)	648
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	6 cut(s)	251, 434, 509, 696, 755, 786
BfmI	CTRYAG	1 cut(s)	941
BfuAI	ACCTGC	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	648
BisI	GCNGC	1 cut(s)	776
BlsI	GCNGC	1 cut(s)	777
BmcAI	AGTACT	2 cut(s)	110, 814
Bme1390I	CCNGG	1 cut(s)	717
BmiI	GGNNCC	2 cut(s)	460, 803
BmrFI	CCNGG	1 cut(s)	717
BmsI	GCATC	4 cut(s)	322, 759, 787, 880
BpmI	CTGGAG	2 cut(s)	168, 801
BsaBI	GATNNNNATC	1 cut(s)	127
BsaJI	CCNNGG	4 cut(s)	462, 715, 805, 922
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 450, 480
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 226, 722, 788, 824
Bse1I	ACTGG	2 cut(s)	171, 803
Bse3DI	GCAATG	1 cut(s)	372
Bse8I	GATNNNNATC	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	717
BseDI	CCNNGG	4 cut(s)	462, 715, 805, 922
BseGI	GGATG	5 cut(s)	124, 522, 653, 750, 778
BseJI	GATNNNNATC	1 cut(s)	127
BseLI	CCNNNNNNNGG	5 cut(s)	16, 226, 722, 788, 824
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	171, 803
BseXI	GCAGC	1 cut(s)	787
BseYI	CCCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	396
BslFI	GGGAC	2 cut(s)	626, 684
BslI	CCNNNNNNNGG	5 cut(s)	16, 226, 722, 788, 824
BsmFI	GGGAC	2 cut(s)	626, 684
Bsp143I	GATC	3 cut(s)	38, 298, 757
Bsp19I	CCATGG	1 cut(s)	922
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	460, 803
BspMI	ACCTGC	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	372
BsrI	ACTGG	2 cut(s)	171, 803
BssECI	CCNNGG	4 cut(s)	462, 715, 805, 922
BssMI	GATC	3 cut(s)	38, 298, 757
BssT1I	CCWWGG	1 cut(s)	922
Bst2UI	CCWGG	1 cut(s)	717
Bst4CI	ACNGT	3 cut(s)	84, 600, 919
BstC8I	GCNNGC	2 cut(s)	864, 895
BstDEI	CTNAG	1 cut(s)	112
BstDSI	CCRYGG	2 cut(s)	805, 922
BstEII	GGTNACC	1 cut(s)	913
BstF5I	GGATG	5 cut(s)	124, 522, 653, 750, 778
BstKTI	GATC	3 cut(s)	41, 301, 760
BstMBI	GATC	3 cut(s)	38, 298, 757
BstNI	CCWGG	1 cut(s)	717
BstNSI	RCATGY	2 cut(s)	450, 545
BstPI	GGTNACC	1 cut(s)	913
BstSCI	CCNGG	1 cut(s)	715
BstSFI	CTRYAG	1 cut(s)	941
BstV1I	GCAGC	1 cut(s)	787
BsuI	GTATCC	1 cut(s)	648
BtgI	CCRYGG	2 cut(s)	805, 922
BtsCI	GGATG	5 cut(s)	124, 522, 653, 750, 778
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	1 cut(s)	603
BveI	ACCTGC	1 cut(s)	368
Cac8I	GCNNGC	2 cut(s)	864, 895
Csp6I	GTAC	3 cut(s)	109, 154, 813
CviAII	CATG	4 cut(s)	359, 447, 542, 923
CviJI	RGCY	9 cut(s)	146, 236, 461, 527, 634, 695, 720, 821, 832
CviKI_1	RGCY	9 cut(s)	146, 236, 461, 527, 634, 695, 720, 821, 832
CviQI	GTAC	3 cut(s)	109, 154, 813
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	3 cut(s)	40, 300, 759
DpnII	GATC	3 cut(s)	38, 298, 757
Eco130I	CCWWGG	1 cut(s)	922
Eco91I	GGTNACC	1 cut(s)	913
EcoO65I	GGTNACC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	922
ErhI	CCWWGG	1 cut(s)	922
FaeI	CATG	4 cut(s)	362, 450, 545, 926
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FaqI	GGGAC	2 cut(s)	626, 684
FatI	CATG	4 cut(s)	358, 446, 541, 922
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	1 cut(s)	776
FokI	GGATG	5 cut(s)	131, 529, 660, 737, 765
Fsp4HI	GCNGC	1 cut(s)	776
FspBI	CTAG	6 cut(s)	251, 434, 509, 696, 755, 786
GluI	GCNGC	1 cut(s)	776
GsaI	CCCAGC	1 cut(s)	612
GsuI	CTGGAG	2 cut(s)	168, 801
Hin1II	CATG	4 cut(s)	362, 450, 545, 926
HinfI	GANTC	4 cut(s)	50, 128, 245, 590
HphI	GGTGA	4 cut(s)	45, 167, 665, 925
Hpy166II	GTNNAC	2 cut(s)	439, 603
Hpy188I	TCNGA	5 cut(s)	49, 115, 284, 303, 595
Hpy188III	TCNNGA	3 cut(s)	401, 641, 723
Hpy8I	GTNNAC	2 cut(s)	439, 603
HpyAV	CCTTC	4 cut(s)	127, 514, 650, 792
HpyCH4III	ACNGT	3 cut(s)	84, 600, 919
HpyCH4V	TGCA	3 cut(s)	377, 537, 897
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	362, 450, 545, 926
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	3 cut(s)	38, 298, 757
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	1 cut(s)	787
LweI	GCATC	4 cut(s)	322, 759, 787, 880
MaeI	CTAG	6 cut(s)	251, 434, 509, 696, 755, 786
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	3 cut(s)	40, 300, 759
MboI	GATC	3 cut(s)	38, 298, 757
MboII	GAAGA	7 cut(s)	208, 341, 358, 416, 498, 637, 895
MluCI	AATT	7 cut(s)	560, 581, 619, 689, 762, 836, 927
MlyI	GAGTC	1 cut(s)	584
MnlI	CCTC	8 cut(s)	109, 143, 230, 408, 457, 538, 719, 904
MroXI	GAANNNNTTC	1 cut(s)	244
MseI	TTAA	2 cut(s)	12, 338
MslI	CAYNNNNRTG	2 cut(s)	180, 449
MspR9I	CCNGG	1 cut(s)	717
MvaI	CCWGG	1 cut(s)	717
NcoI	CCATGG	1 cut(s)	922
NdeII	GATC	3 cut(s)	38, 298, 757
NlaIII	CATG	4 cut(s)	362, 450, 545, 926
NlaIV	GGNNCC	2 cut(s)	460, 803
NmeAIII	GCCGAG	1 cut(s)	487
NmuCI	GTSAC	1 cut(s)	913
NspI	RCATGY	2 cut(s)	450, 545
OliI	CACNNNNGTG	1 cut(s)	449
PciI	ACATGT	2 cut(s)	446, 541
PdmI	GAANNNNTTC	1 cut(s)	244
PfeI	GAWTC	3 cut(s)	50, 128, 245
PkrI	GCNGC	1 cut(s)	777
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PscI	ACATGT	2 cut(s)	446, 541
Psp6I	CCWGG	1 cut(s)	715
PspEI	GGTNACC	1 cut(s)	913
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	715
PspN4I	GGNNCC	2 cut(s)	460, 803
RsaI	GTAC	3 cut(s)	110, 155, 814
RsaNI	GTAC	3 cut(s)	109, 154, 813
RseI	CAYNNNNRTG	2 cut(s)	180, 449
SaqAI	TTAA	2 cut(s)	12, 338
SatI	GCNGC	1 cut(s)	776
Sau3AI	GATC	3 cut(s)	38, 298, 757
ScaI	AGTACT	2 cut(s)	110, 814
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	717
SetI	ASST	9 cut(s)	12, 148, 238, 382, 468, 577, 636, 823, 915
SfaNI	GCATC	4 cut(s)	322, 759, 787, 880
SfcI	CTRYAG	1 cut(s)	941
SmiMI	CAYNNNNRTG	2 cut(s)	180, 449
Sse9I	AATT	7 cut(s)	560, 581, 619, 689, 762, 836, 927
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	6 cut(s)	251, 434, 509, 696, 755, 786
StyD4I	CCNGG	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	922
TaaI	ACNGT	3 cut(s)	84, 600, 919
TaqI	TCGA	2 cut(s)	131, 384
TasI	AATT	7 cut(s)	560, 581, 619, 689, 762, 836, 927
TatI	WGTACW	2 cut(s)	108, 812
TfiI	GAWTC	3 cut(s)	50, 128, 245
Tru1I	TTAA	2 cut(s)	12, 338
Tru9I	TTAA	2 cut(s)	12, 338
TscAI	CASTG	1 cut(s)	610
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	1 cut(s)	775
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	6 cut(s)	141, 347, 533, 555, 755, 829
TspGWI	ACGGA	2 cut(s)	61, 794
TspRI	CASTG	1 cut(s)	610
XapI	RAATTY	4 cut(s)	560, 581, 762, 927
XceI	RCATGY	2 cut(s)	450, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	825
XmnI	GAANNNNTTC	1 cut(s)	244
XspI	CTAG	6 cut(s)	251, 434, 509, 696, 755, 786
ZrmI	AGTACT	2 cut(s)	110, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.