MD13G1142900.v1.1

Ubiquitin carboxyl-terminal hydrolase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
11123754 .. 11125797
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1142900.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGCTTGTTATCTCTTTCAACAAAATGGGTTTTCGACATCATTTTCAGATTCACCTCCAACTCATTATGCTCTAAAAATCCGGTCGTTTTCAGTGCTAACCAAAACTTCAGCTGACGAATATGAGTCGGGAGAATTTGAAGCTGGAGGATACAAATGGAAACTAGTGCTCTACCCGAATGGAAACAAGAAGAAAAATGTGGAAGACCACATATCTGTTTACTTGGAAATGGTTGGAGCTGATTCACTTCAGACTGGATATGAAGTATATGTTGATTTCAGGTTCTTTTTGCTTGATCAGAATAAAGGCATGTTCCTGGTTCTTCAAGATGCCAATAAAAAGGAAAAATGTTTCCATGCGATTATGCATTCTTCGGGATTTGATAAGCTTATCACTCTTACATCATTTACTAATCCTTCCAATGGATATGTCATTGATGATAATTGTGTGATTGGAGCTGAGGTCTTTGTTTGTAAAGAAAGAAGAGCTGGCAAAGGAGAGTCAATCTCGAAGATCAAGGATGCTGTTAAGTGCAAGCATGTTTGGAAGGTTGAGAACTTTTCAAAGTTAGGTACTGACTGCTGCAAATCAGAACCATTCACTGCTGGAGGACGGAAATGGAAGATAAGTCTCCATCCCAAGGGAAATAACCTTGGAAAGGGTACTCACATATCTCTTTACTTGGAATTGGTTGATCCTGAAAAACTTGCTGGTTCCAAAGTATATGCAGAGTTTTCCCTGCTCATTGTAGATCGAATGTATGCCAAACAAGAGGGCCAAAAAGCTAACGTCTGGTTCAGTACCTCAAATTCGGAGTGGGGCTGGCCTAAGGTCATTTCGCTGGCCACCTTGAATCAGGCAGGCAATGGGTTTTTAGTGAAGGATACTTGCATAGTGGAGGCAGAGGTTGCTGTCCATGGAATTGTAACTGCACTGTAG

Protein Analysis

313

Amino Acids

34.8

Weight (kDa)

8.01

Isoelectric Point (pI)

23.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 22 - 155 2e-33 MATH domain
MATH PF00917 27 - 157 4.3e-11 MATH domain
MATH_2 PF22486 179 - 303 2.5e-35 MATH domain
MATH PF00917 184 - 305 1.2e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000185)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17380
fragaria_vesca FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 689
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 2 cut(s) 134, 808
AcuI CTGAAG 2 cut(s) 93, 233
AfaI GTAC 3 cut(s) 574, 664, 802
AfiI CCNNNNNNNGG 3 cut(s) 422, 640, 658
AgsI TTSAA 5 cut(s) 20, 140, 326, 564, 853
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 7 cut(s) 113, 143, 239, 388, 458, 488, 785
AluI AGCT 7 cut(s) 113, 143, 239, 388, 458, 488, 785
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 1 cut(s) 689
AoxI GGCC 3 cut(s) 775, 824, 843
ApeKI GCWGC 1 cut(s) 582
ApoI RAATTY 2 cut(s) 134, 808
AspS9I GGNCC 1 cut(s) 775
AsuHPI GGTGA 1 cut(s) 45
AxyI CCTNAGG 1 cut(s) 828
BalI TGGCCA 1 cut(s) 845
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 171
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 1 cut(s) 569
BccI CCATC 1 cut(s) 642
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 2 cut(s) 143, 877
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 935
BfuI GTATCC 2 cut(s) 143, 877
BisI GCNGC 1 cut(s) 583
BlsI GCNGC 1 cut(s) 584
Bme1390I CCNGG 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 775
BmiI GGNNCC 1 cut(s) 715
BmrFI CCNGG 1 cut(s) 317
BmsI GCATC 2 cut(s) 319, 511
BpiI GAAGAC 1 cut(s) 210
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpmI CTGGAG 2 cut(s) 165, 627
Bpu10I CCTNAGC 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 639, 652, 916
BsaWI WCCGGW 1 cut(s) 81
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bsc4I CCNNNNNNNGG 3 cut(s) 422, 640, 658
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 828
Bse3DI GCAATG 1 cut(s) 871
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 3 cut(s) 639, 652, 916
BseGI GGATG 2 cut(s) 526, 634
BseLI CCNNNNNNNGG 3 cut(s) 422, 640, 658
BseMI GCAATG 1 cut(s) 871
BseMII CTCAG 1 cut(s) 450
BseNI ACTGG 1 cut(s) 259
BseXI GCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 915
Bsh1285I CGRYCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 777, 826, 845
BsiEI CGRYCG 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 422, 640, 658
BsmAI GTCTC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 3 cut(s) 777, 826, 845
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 4 cut(s) 295, 513, 694, 751
Bsp19I CCATGG 1 cut(s) 916
BspANI GGCC 3 cut(s) 777, 826, 845
BspCNI CTCAG 1 cut(s) 451
BspLI GGNNCC 1 cut(s) 715
BspPI GGATC 1 cut(s) 689
BspQI GCTCTTC 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 871
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 3 cut(s) 639, 652, 916
BssMI GATC 4 cut(s) 295, 513, 694, 751
BssT1I CCWWGG 3 cut(s) 639, 652, 916
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 936
Bst6I CTCTTC 1 cut(s) 478
BstAPI GCANNNNNTGC 1 cut(s) 908
BstC8I GCNNGC 5 cut(s) 490, 536, 824, 843, 862
BstDEI CTNAG 2 cut(s) 459, 828
BstDSI CCRYGG 1 cut(s) 916
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 526, 634
BstKTI GATC 4 cut(s) 298, 516, 697, 754
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 4 cut(s) 295, 513, 694, 751
BstMCI CGRYCG 1 cut(s) 86
BstMWI GCNNNNNNNGC 1 cut(s) 908
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 2 cut(s) 313, 542
BstSCI CCNGG 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 935
BstV1I GCAGC 1 cut(s) 569
BstV2I GAAGAC 1 cut(s) 210
Bsu36I CCTNAGG 1 cut(s) 828
BsuI GTATCC 2 cut(s) 143, 877
BsuRI GGCC 3 cut(s) 777, 826, 845
BtgI CCRYGG 1 cut(s) 916
BtsCI GGATG 2 cut(s) 526, 634
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 3 cut(s) 99, 600, 932
Cac8I GCNNGC 5 cut(s) 490, 536, 824, 843, 862
Cfr13I GGNCC 1 cut(s) 775
Csp6I GTAC 3 cut(s) 573, 663, 801
CviAII CATG 4 cut(s) 310, 356, 539, 917
CviQI GTAC 3 cut(s) 573, 663, 801
DdeI CTNAG 2 cut(s) 459, 828
DpnI GATC 4 cut(s) 297, 515, 696, 753
DpnII GATC 4 cut(s) 295, 513, 694, 751
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 1 cut(s) 478
EarI CTCTTC 1 cut(s) 478
Eco130I CCWWGG 3 cut(s) 639, 652, 916
Eco57I CTGAAG 2 cut(s) 93, 233
Eco81I CCTNAGG 1 cut(s) 828
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 315
EcoT14I CCWWGG 3 cut(s) 639, 652, 916
EcoT22I ATGCAT 1 cut(s) 369
ErhI CCWWGG 3 cut(s) 639, 652, 916
FaeI CATG 4 cut(s) 313, 359, 542, 920
FatI CATG 4 cut(s) 309, 355, 538, 916
FbaI TGATCA 1 cut(s) 295
Fnu4HI GCNGC 1 cut(s) 583
FokI GGATG 2 cut(s) 533, 621
Fsp4HI GCNGC 1 cut(s) 583
FspBI CTAG 1 cut(s) 164
GluI GCNGC 1 cut(s) 583
GsuI CTGGAG 2 cut(s) 165, 627
HaeIII GGCC 3 cut(s) 777, 826, 845
HapII CCGG 1 cut(s) 82
Hin1II CATG 4 cut(s) 313, 359, 542, 920
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 5 cut(s) 50, 125, 242, 500, 853
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 45
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 49, 252, 300, 592, 814
Hpy188III TCNNGA 5 cut(s) 129, 326, 375, 508, 698
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 3 cut(s) 426, 541, 874
HpyCH4III ACNGT 1 cut(s) 936
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 6 cut(s) 367, 534, 585, 728, 891, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 908
HpyF3I CTNAG 2 cut(s) 459, 828
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 4 cut(s) 313, 359, 542, 920
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 4 cut(s) 295, 513, 694, 751
LguI GCTCTTC 1 cut(s) 478
LmnI GCTCC 2 cut(s) 236, 455
Lsp1109I GCAGC 1 cut(s) 569
LweI GCATC 2 cut(s) 319, 511
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 1 cut(s) 925
MalI GATC 4 cut(s) 297, 515, 696, 753
MboI GATC 4 cut(s) 295, 513, 694, 751
MboII GAAGA 7 cut(s) 202, 215, 314, 363, 495, 523, 634
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 845
MluCI AATT 5 cut(s) 134, 442, 686, 808, 921
MluNI TGGCCA 1 cut(s) 845
MlyI GAGTC 2 cut(s) 134, 509
MmeI TCCRAC 2 cut(s) 83, 214
MnlI CCTC 8 cut(s) 66, 140, 454, 602, 766, 814, 892, 898
Mox20I TGGCCA 1 cut(s) 845
Mph1103I ATGCAT 1 cut(s) 369
MscI TGGCCA 1 cut(s) 845
MseI TTAA 1 cut(s) 528
Msp20I TGGCCA 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 317
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 908
NcoI CCATGG 1 cut(s) 916
NdeII GATC 4 cut(s) 295, 513, 694, 751
NlaIII CATG 4 cut(s) 313, 359, 542, 920
NlaIV GGNNCC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 2 cut(s) 313, 542
PciSI GCTCTTC 1 cut(s) 478
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 3 cut(s) 50, 242, 853
PkrI GCNGC 1 cut(s) 584
PleI GAGTC 2 cut(s) 133, 508
PpsI GAGTC 2 cut(s) 133, 508
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 1 cut(s) 715
PspPI GGNCC 1 cut(s) 775
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 574, 664, 802
RsaNI GTAC 3 cut(s) 573, 663, 801
SapI GCTCTTC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 1 cut(s) 583
Sau3AI GATC 4 cut(s) 295, 513, 694, 751
Sau96I GGNCC 1 cut(s) 775
SchI GAGTC 2 cut(s) 134, 509
ScrFI CCNGG 1 cut(s) 317
SduI GDGCHC 1 cut(s) 171
SfaNI GCATC 2 cut(s) 319, 511
SfcI CTRYAG 1 cut(s) 935
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 5 cut(s) 134, 442, 686, 808, 921
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 315
StyI CCWWGG 3 cut(s) 639, 652, 916
TaaI ACNGT 1 cut(s) 936
TaiI ACGT 1 cut(s) 792
TaqI TCGA 3 cut(s) 35, 509, 754
TasI AATT 5 cut(s) 134, 442, 686, 808, 921
TfiI GAWTC 3 cut(s) 50, 242, 853
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 3 cut(s) 99, 607, 939
TseI GCWGC 1 cut(s) 582
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 628
TspRI CASTG 3 cut(s) 99, 607, 939
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 2 cut(s) 134, 808
XceI RCATGY 2 cut(s) 313, 542
XspI CTAG 1 cut(s) 164
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.