Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

8625761 .. 8627555

Gene Structure 1795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G107700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTACTCTTAACATCATCCAAGATGGGATTTTGAGGTCATTTTCACAATCACCACCAACTCATTACACTATGAAAATACAGTCTTTTTCATTCCTGTACAAAAATAATGTGGCTAGTATTGAGTCAGGGGATTTCAAAGCTGGAGGATACAAATGGAAATTGAGGCTCTATCCAAATGGTTACTTGAAGAAGAATGTGGTGGACCACATCTCTTTCTACCTGGTAATCTCTGGATCAGCCTATTTCCAAGATGGTTGGGAACTTAATGCTTTTTTCAGATTGTTTTTGCTCGATCAGATAAAAGGCACCTACTTGGTACTTGAAGATGCCAATAAAAAAGTAAAGTGTTTTCATGGGAAGATGCTTTATTCGGGTTTCGATCAATTTATCCCTCTGGAATCATTTGTGGATCCTTCCAATGGTTATCTCATTGATGACACCTGTGTGTTTGGAGCTGAGGTCTTTGTTTCTGAAAAAAGCAGAATAGTTAGAGAAGATTGCCTATCAATGATCAAGAATCCTGTCATGTACCAGCATGCTTGGAAGATTGAGAAGTTTTCAGAGTTAAAATCTGGATATTACTCAGTAGCATTTAAAGCTGGTGACTACAAATGGAAGATACTTATCTATCCCAAGGGATATGGCCTTGGAAAGGGTAGTCATCTTTCTCTTGACTTGAAATTGTCTAATCCTAAAACCCTACCTCCTGGCTCTGGAATATTTGCAGCGTATTGTGTGCGCATTGTAGATCAAAAGCACACTAAGCATGTTTTCGTTAAAGGGTATAACTGGTTCAGTGCCTCGCGTCTGGCTCAGGGTTGGCAACGTCTCATTAAGCTGGACCTTTTCCGTCGGGCAGGAAGTGGTTTTTTGAAGAAGGATACTTGCTTATTGGAGGCAGAGGTCACTGTACACGGAATTTCTAAAGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

313

Amino Acids

35.53

Weight (kDa)

9.38

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	743
AccB1I	GGYRCC	1 cut(s)	308
AccII	CGCG	1 cut(s)	808
AclWI	GGATC	3 cut(s)	244, 407, 420
AcsI	RAATTY	1 cut(s)	921
AfaI	GTAC	5 cut(s)	7, 101, 321, 533, 915
AfiI	CCNNNNNNNGG	3 cut(s)	422, 655, 716
AgsI	TTSAA	5 cut(s)	139, 190, 326, 682, 877
AjnI	CCWGG	2 cut(s)	222, 709
AleI	CACNNNNGTG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	143, 458, 602, 841, 932
AluI	AGCT	5 cut(s)	143, 458, 602, 841, 932
Alw26I	GTCTC	1 cut(s)	836
AlwI	GGATC	3 cut(s)	244, 407, 420
AoxI	GGCC	1 cut(s)	646
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	921
AspLEI	GCGC	1 cut(s)	744
AspS9I	GGNCC	2 cut(s)	205, 844
AsuHPI	GGTGA	2 cut(s)	45, 617
AvaII	GGWCC	2 cut(s)	205, 844
BamHI	GGATCC	1 cut(s)	412
BanI	GGYRCC	1 cut(s)	308
BbvCI	CCTCAGC	1 cut(s)	459
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	2 cut(s)	20, 248
BciT130I	CCWGG	2 cut(s)	224, 711
BciVI	GTATCC	2 cut(s)	143, 877
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	836
BfaI	CTAG	1 cut(s)	117
BfuI	GTATCC	2 cut(s)	143, 877
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	2 cut(s)	224, 711
Bme18I	GGWCC	2 cut(s)	205, 844
BmgT120I	GGNCC	2 cut(s)	205, 844
BmiI	GGNNCC	2 cut(s)	310, 414
BmrFI	CCNGG	2 cut(s)	224, 711
BmsI	GCATC	2 cut(s)	319, 354
BpmI	CTGGAG	1 cut(s)	165
Bpu10I	CCTNAGC	2 cut(s)	459, 816
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	2 cut(s)	636, 649
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 477, 691, 721
Bsc4I	CCNNNNNNNGG	3 cut(s)	422, 655, 716
Bse1I	ACTGG	1 cut(s)	797
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	2 cut(s)	224, 711
BseDI	CCNNGG	2 cut(s)	636, 649
BseGI	GGATG	1 cut(s)	18
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	3 cut(s)	422, 655, 716
BseMII	CTCAG	3 cut(s)	450, 600, 830
BseNI	ACTGG	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	740
Bsh1236I	CGCG	1 cut(s)	808
BshFI	GGCC	1 cut(s)	648
BshNI	GGYRCC	1 cut(s)	308
BslI	CCNNNNNNNGG	3 cut(s)	422, 655, 716
BsmAI	GTCTC	1 cut(s)	836
BsmBI	CGTCTC	1 cut(s)	836
BsnI	GGCC	1 cut(s)	648
Bsp1407I	TGTACA	2 cut(s)	99, 913
Bsp143I	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
BspANI	GGCC	1 cut(s)	648
BspCNI	CTCAG	3 cut(s)	451, 599, 829
BspFNI	CGCG	1 cut(s)	808
BspLI	GGNNCC	2 cut(s)	310, 414
BspPI	GGATC	3 cut(s)	244, 407, 420
BspT107I	GGYRCC	1 cut(s)	308
BsrGI	TGTACA	2 cut(s)	99, 913
BsrI	ACTGG	1 cut(s)	797
BssECI	CCNNGG	2 cut(s)	636, 649
BssMI	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
BssT1I	CCWWGG	2 cut(s)	636, 649
Bst2UI	CCWGG	2 cut(s)	224, 711
Bst4CI	ACNGT	2 cut(s)	84, 913
BstAUI	TGTACA	2 cut(s)	99, 913
BstC8I	GCNNGC	1 cut(s)	540
BstDEI	CTNAG	4 cut(s)	459, 586, 765, 816
BstENI	CCTNNNNNAGG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	808
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	6 cut(s)	239, 298, 385, 415, 516, 754
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
BstMWI	GCNNNNNNNGC	2 cut(s)	599, 766
BstNI	CCWGG	2 cut(s)	224, 711
BstNSI	RCATGY	2 cut(s)	542, 773
BstSCI	CCNGG	2 cut(s)	222, 709
BstUI	CGCG	1 cut(s)	808
BstV1I	GCAGC	1 cut(s)	740
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	2 cut(s)	143, 877
BsuRI	GGCC	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	805, 909
Cac8I	GCNNGC	1 cut(s)	540
CfoI	GCGC	1 cut(s)	744
Cfr13I	GGNCC	2 cut(s)	205, 844
CseI	GACGC	1 cut(s)	797
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	5 cut(s)	6, 100, 320, 532, 914
CviAII	CATG	4 cut(s)	356, 529, 539, 770
CviQI	GTAC	5 cut(s)	6, 100, 320, 532, 914
DdeI	CTNAG	4 cut(s)	459, 586, 765, 816
DpnI	GATC	6 cut(s)	238, 297, 384, 414, 515, 753
DpnII	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
DraI	TTTAAA	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	636, 649
Eco47I	GGWCC	2 cut(s)	205, 844
EcoNI	CCTNNNNNAGG	1 cut(s)	653
EcoRII	CCWGG	2 cut(s)	222, 709
EcoT14I	CCWWGG	2 cut(s)	636, 649
ErhI	CCWWGG	2 cut(s)	636, 649
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	4 cut(s)	359, 532, 542, 773
FaiI	YATR	7 cut(s)	74, 357, 530, 540, 645, 771, 789
FatI	CATG	4 cut(s)	355, 528, 538, 769
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	729
FspAI	RTGCGCAY	1 cut(s)	743
FspBI	CTAG	1 cut(s)	117
FspI	TGCGCA	1 cut(s)	743
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	1 cut(s)	729
GsuI	CTGGAG	1 cut(s)	165
HaeIII	GGCC	1 cut(s)	648
HgaI	GACGC	1 cut(s)	797
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	4 cut(s)	359, 532, 542, 773
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	3 cut(s)	125, 401, 520
HphI	GGTGA	2 cut(s)	45, 617
Hpy166II	GTNNAC	2 cut(s)	205, 916
Hpy188I	TCNGA	4 cut(s)	281, 300, 475, 565
Hpy188III	TCNNGA	6 cut(s)	234, 398, 517, 576, 674, 717
Hpy8I	GTNNAC	2 cut(s)	205, 916
Hpy99I	CGWCG	1 cut(s)	858
HpyAV	CCTTC	2 cut(s)	426, 874
HpyCH4III	ACNGT	2 cut(s)	84, 913
HpyCH4IV	ACGT	1 cut(s)	829
HpyCH4V	TGCA	1 cut(s)	728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	599, 766
HpyF3I	CTNAG	4 cut(s)	459, 586, 765, 816
HpySE526I	ACGT	1 cut(s)	829
Hsp92II	CATG	4 cut(s)	359, 532, 542, 773
HspAI	GCGC	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	2 cut(s)	319, 354
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	1 cut(s)	829
MaeIII	GTNAC	3 cut(s)	182, 605, 907
MalI	GATC	6 cut(s)	238, 297, 384, 414, 515, 753
MboI	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
MboII	GAAGA	8 cut(s)	202, 205, 338, 373, 509, 559, 631, 889
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	4 cut(s)	161, 386, 683, 921
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	9 cut(s)	30, 140, 159, 405, 454, 717, 814, 892, 898
MseI	TTAA	7 cut(s)	12, 267, 569, 597, 780, 837, 937
MslI	CAYNNNNRTG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	224, 711
MvaI	CCWGG	2 cut(s)	224, 711
MvnI	CGCG	1 cut(s)	808
MwoI	GCNNNNNNNGC	2 cut(s)	599, 766
NdeII	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
NlaIII	CATG	4 cut(s)	359, 532, 542, 773
NlaIV	GGNNCC	2 cut(s)	310, 414
NmuCI	GTSAC	2 cut(s)	605, 907
NsbI	TGCGCA	1 cut(s)	743
NspI	RCATGY	2 cut(s)	542, 773
OliI	CACNNNNGTG	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	542
PfeI	GAWTC	2 cut(s)	401, 520
PkrI	GCNGC	1 cut(s)	730
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	222, 709
PspGI	CCWGG	2 cut(s)	222, 709
PspN4I	GGNNCC	2 cut(s)	310, 414
PspPI	GGNCC	2 cut(s)	205, 844
PsrI	GAACNNNNNNTAC	2 cut(s)	779, 811
PsuI	RGATCY	1 cut(s)	412
RsaI	GTAC	5 cut(s)	7, 101, 321, 533, 915
RsaNI	GTAC	5 cut(s)	6, 100, 320, 532, 914
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	7 cut(s)	12, 267, 569, 597, 780, 837, 937
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	6 cut(s)	236, 295, 382, 412, 513, 751
Sau96I	GGNCC	2 cut(s)	205, 844
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	224, 711
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	319, 354
SinI	GGWCC	2 cut(s)	205, 844
SmiMI	CAYNNNNRTG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	542
Sse9I	AATT	4 cut(s)	161, 386, 683, 921
SspI	AATATT	1 cut(s)	723
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	222, 709
StyI	CCWWGG	2 cut(s)	636, 649
TaaI	ACNGT	2 cut(s)	84, 913
TaiI	ACGT	1 cut(s)	832
TaqI	TCGA	2 cut(s)	294, 381
TasI	AATT	4 cut(s)	161, 386, 683, 921
TatI	WGTACW	2 cut(s)	99, 913
TfiI	GAWTC	2 cut(s)	401, 520
Tru1I	TTAA	7 cut(s)	12, 267, 569, 597, 780, 837, 937
Tru9I	TTAA	7 cut(s)	12, 267, 569, 597, 780, 837, 937
TscAI	CASTG	2 cut(s)	805, 916
TseFI	GTSAC	2 cut(s)	605, 907
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	2 cut(s)	605, 907
TspDTI	ATGAA	3 cut(s)	81, 89, 344
TspGWI	ACGGA	2 cut(s)	842, 933
TspRI	CASTG	2 cut(s)	805, 916
VpaK11BI	GGWCC	2 cut(s)	205, 844
XagI	CCTNNNNNAGG	1 cut(s)	653
XapI	RAATTY	1 cut(s)	921
XceI	RCATGY	2 cut(s)	542, 773
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.