Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Reverse (-)

45917338 .. 45919276

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTATCCTTAACTCGGACCAAGATGGCGTTTTCAGATCACTTTCAGATTCACTCCCAACTCATTGCACTCTAAATATAGAGTCGTTTTCGTTGCTAGCTGAATATCATGGAGTCAATGGATATGAATCAAAAGAGTTCGAAGCCGGAGGATACATATGGAAACTGGTGCTGTACCCAAATGGAAACAAGAAGAAGAATGTGGAAGACCACATCTCTGTCTACTTGCGCATAGCCGGAGAAGATTCACTTCAGACTGGTTGGGGAGTATCTGTTGATTTTAGATTGTTTTTGCTTGATCAGAATAAGGGAATGTACTTGGTTCTTGAAGATGCTTTTACAAAGCAGAAGTGCTTTCACGCAGGGTTGCTTCATGTAGGTTTTGATAAGCTAATCCGTCTTAAAGAATTTACTGATGTTTCCAATGGATATCTCATCGATGACAAGTGTGTATTTGGAGCTGAGGTCTTTGTTTGCAAAGAAAGAAAAACAGGCCAGGCAGAGTGTATATCAAGGATAAAGAGCCCTTGTATGTACAAGCATGTTTGGAAACTTGAAAAATTTTCAAAGTTGAACGCTCAGTTCTACCACTCAAAACAATTCAGTGCTGAAGGACTAAACTGGGCTATAGTACTCTATCCCAAGAGGAAAAGCACCACAAACGATCCTTCTCATCTGTCTGTTTACTTGCAATGGGTTGCTGAAAAAACAAGTCATGTCACCAAAGTATTTACAGAGTATGCCTTACGCATTGTAGATCGAAATCATGCCAGCATTCAATATCGCTCAGGTAAGTACTGTTTTAACACTGCCTCTCGGACTCATGGTTGGCGTGCATTCATTTCACTTGGTGATTTAAGTCGTCTTTTGAAGTACGATACTTGCCTAGTGGAGGCAGAGGTCACTGTTCGTGCAATTGCTAAGATTCTTGCTAAAGATGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

315

Amino Acids

35.95

Weight (kDa)

8.7

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	22 - 156	5.8e-31	MATH domain
MATH	PF00917	39 - 158	7.2e-12	MATH domain
MATH_2	PF22486	180 - 301	3.9e-21	MATH domain
MATH	PF00917	187 - 303	3.7e-12	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	659
AcsI	RAATTY	2 cut(s)	407, 560
AcuI	CTGAAG	2 cut(s)	236, 630
AdeI	CACNNNGTG	1 cut(s)	851
AfaI	GTAC	6 cut(s)	176, 317, 536, 633, 797, 875
AfiI	CCNNNNNNNGG	2 cut(s)	16, 892
AgsI	TTSAA	6 cut(s)	329, 557, 567, 574, 779, 871
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	101, 391, 461
AluI	AGCT	3 cut(s)	101, 391, 461
AlwI	GGATC	1 cut(s)	659
AoxI	GGCC	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	407, 560
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	2 cut(s)	712, 863
AsuII	TTCGAA	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	462
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	1 cut(s)	497
BciVI	GTATCC	1 cut(s)	146
BclI	TGATCA	1 cut(s)	298
BfaI	CTAG	2 cut(s)	98, 887
BfmI	CTRYAG	1 cut(s)	627
BfuI	GTATCC	1 cut(s)	146
BmcAI	AGTACT	2 cut(s)	633, 797
Bme1390I	CCNGG	1 cut(s)	497
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	497
BmrI	ACTGGG	1 cut(s)	631
BmsI	GCATC	2 cut(s)	322, 928
BmtI	GCTAGC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	631
BpiI	GAAGAC	1 cut(s)	213
Bpu10I	CCTNAGC	2 cut(s)	462, 787
Bpu14I	TTCGAA	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	438
BsaBI	GATNNNNATC	2 cut(s)	127, 762
BsaXI	ACNNNNNCTCC	4 cut(s)	258, 288, 450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 892
Bse1I	ACTGG	3 cut(s)	171, 262, 626
Bse3DI	GCAATG	2 cut(s)	64, 698
Bse8I	GATNNNNATC	2 cut(s)	127, 762
BseBI	CCWGG	1 cut(s)	497
BseCI	ATCGAT	1 cut(s)	438
BseJI	GATNNNNATC	2 cut(s)	127, 762
BseLI	CCNNNNNNNGG	2 cut(s)	16, 892
BseMI	GCAATG	2 cut(s)	64, 698
BseMII	CTCAG	3 cut(s)	453, 593, 801
BseNI	ACTGG	3 cut(s)	171, 262, 626
BshFI	GGCC	1 cut(s)	495
BshVI	ATCGAT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	147, 237
BslI	CCNNNNNNNGG	2 cut(s)	16, 892
BsmI	GAATGC	2 cut(s)	774, 836
BsnI	GGCC	1 cut(s)	495
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	38, 298, 664, 757
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	454, 592, 800
BspDI	ATCGAT	1 cut(s)	438
BspOI	GCTAGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	659
BspT104I	TTCGAA	1 cut(s)	141
BsrDI	GCAATG	2 cut(s)	64, 698
BsrGI	TGTACA	1 cut(s)	534
BsrI	ACTGG	3 cut(s)	171, 262, 626
BssMI	GATC	4 cut(s)	38, 298, 664, 757
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	800, 907
BstAUI	TGTACA	1 cut(s)	534
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	99, 772, 834, 943
BstDEI	CTNAG	4 cut(s)	462, 579, 787, 921
BstENI	CCTNNNNNAGG	1 cut(s)	890
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	4 cut(s)	41, 301, 667, 760
BstMBI	GATC	4 cut(s)	38, 298, 664, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	938
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	2 cut(s)	545, 945
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	627
BstV2I	GAAGAC	1 cut(s)	213
Bsu15I	ATCGAT	1 cut(s)	438
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	495
BsuTUI	ATCGAT	1 cut(s)	438
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	3 cut(s)	610, 807, 903
Cac8I	GCNNGC	4 cut(s)	99, 772, 834, 943
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	19
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	6 cut(s)	175, 316, 535, 632, 796, 874
CviAII	CATG	7 cut(s)	110, 374, 542, 716, 767, 824, 942
CviJI	RGCY	9 cut(s)	5, 101, 146, 236, 391, 461, 495, 525, 626
CviKI_1	RGCY	9 cut(s)	5, 101, 146, 236, 391, 461, 495, 525, 626
CviQI	GTAC	6 cut(s)	175, 316, 535, 632, 796, 874
DdeI	CTNAG	4 cut(s)	462, 579, 787, 921
DpnI	GATC	4 cut(s)	40, 300, 666, 759
DpnII	GATC	4 cut(s)	38, 298, 664, 757
DraIII	CACNNNGTG	1 cut(s)	851
Eco24I	GRGCYC	1 cut(s)	527
Eco32I	GATATC	1 cut(s)	431
Eco47I	GGWCC	1 cut(s)	19
Eco57I	CTGAAG	2 cut(s)	236, 630
EcoNI	CCTNNNNNAGG	1 cut(s)	890
EcoRII	CCWGG	1 cut(s)	495
EcoRV	GATATC	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	943
EcoT38I	GRGCYC	1 cut(s)	527
FaeI	CATG	7 cut(s)	113, 377, 545, 719, 770, 827, 945
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	7 cut(s)	109, 373, 541, 715, 766, 823, 941
FauNDI	CATATG	1 cut(s)	158
FbaI	TGATCA	1 cut(s)	298
FblI	GTMKAC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	527
FspBI	CTAG	2 cut(s)	98, 887
FspI	TGCGCA	1 cut(s)	230
GlaI	GCGC	1 cut(s)	230
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	2 cut(s)	147, 237
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	7 cut(s)	113, 377, 545, 719, 770, 827, 945
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	7 cut(s)	50, 83, 114, 128, 245, 820, 925
HpaII	CCGG	2 cut(s)	147, 237
HphI	GGTGA	2 cut(s)	712, 863
Hpy166II	GTNNAC	2 cut(s)	223, 685
Hpy188I	TCNGA	6 cut(s)	19, 38, 49, 255, 303, 819
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	2 cut(s)	223, 685
HpyAV	CCTTC	2 cut(s)	605, 678
HpyCH4III	ACNGT	2 cut(s)	800, 907
HpyCH4V	TGCA	6 cut(s)	69, 477, 691, 836, 914, 941
HpyF10VI	GCNNNNNNNGC	1 cut(s)	938
HpyF3I	CTNAG	4 cut(s)	462, 579, 787, 921
Hsp92II	CATG	7 cut(s)	113, 377, 545, 719, 770, 827, 945
HspAI	GCGC	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	38, 298, 664, 757
LmnI	GCTCC	1 cut(s)	458
LweI	GCATC	2 cut(s)	322, 928
MaeI	CTAG	2 cut(s)	98, 887
MaeIII	GTNAC	2 cut(s)	718, 901
MalI	GATC	4 cut(s)	40, 300, 666, 759
MboI	GATC	4 cut(s)	38, 298, 664, 757
MboII	GAAGA	5 cut(s)	205, 208, 218, 254, 341
MfeI	CAATTG	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	527
MluCI	AATT	4 cut(s)	407, 560, 599, 915
MlyI	GAGTC	3 cut(s)	92, 123, 814
MnlI	CCTC	6 cut(s)	143, 457, 639, 823, 886, 892
Mph1103I	ATGCAT	1 cut(s)	943
MseI	TTAA	4 cut(s)	12, 402, 804, 857
MspI	CCGG	2 cut(s)	147, 237
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	2 cut(s)	774, 836
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	1 cut(s)	938
NdeI	CATATG	1 cut(s)	158
NdeII	GATC	4 cut(s)	38, 298, 664, 757
NheI	GCTAGC	1 cut(s)	97
NlaIII	CATG	7 cut(s)	113, 377, 545, 719, 770, 827, 945
NmuCI	GTSAC	2 cut(s)	718, 901
NsbI	TGCGCA	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	943
NspI	RCATGY	2 cut(s)	545, 945
NspV	TTCGAA	1 cut(s)	141
PaeI	GCATGC	1 cut(s)	945
PctI	GAATGC	2 cut(s)	774, 836
PfeI	GAWTC	4 cut(s)	50, 128, 245, 925
PleI	GAGTC	3 cut(s)	91, 122, 814
PpsI	GAGTC	3 cut(s)	91, 122, 814
Psp6I	CCWGG	1 cut(s)	495
PspGI	CCWGG	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	19
RsaI	GTAC	6 cut(s)	176, 317, 536, 633, 797, 875
RsaNI	GTAC	6 cut(s)	175, 316, 535, 632, 796, 874
SaqAI	TTAA	4 cut(s)	12, 402, 804, 857
Sau3AI	GATC	4 cut(s)	38, 298, 664, 757
Sau96I	GGNCC	1 cut(s)	19
ScaI	AGTACT	2 cut(s)	633, 797
SchI	GAGTC	3 cut(s)	92, 123, 814
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	1 cut(s)	527
SetI	ASST	7 cut(s)	103, 382, 393, 463, 468, 793, 903
SfaNI	GCATC	2 cut(s)	322, 928
SfcI	CTRYAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	19
SphI	GCATGC	1 cut(s)	945
Sse9I	AATT	4 cut(s)	407, 560, 599, 915
SspMI	CTAG	2 cut(s)	98, 887
StyD4I	CCNGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	800, 907
TaqI	TCGA	3 cut(s)	141, 438, 760
TasI	AATT	4 cut(s)	407, 560, 599, 915
TatI	WGTACW	4 cut(s)	315, 534, 631, 795
TfiI	GAWTC	4 cut(s)	50, 128, 245, 925
Tru1I	TTAA	4 cut(s)	12, 402, 804, 857
Tru9I	TTAA	4 cut(s)	12, 402, 804, 857
TscAI	CASTG	3 cut(s)	610, 814, 910
TseFI	GTSAC	2 cut(s)	718, 901
Tsp45I	GTSAC	2 cut(s)	718, 901
TspDTI	ATGAA	3 cut(s)	141, 362, 829
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	3 cut(s)	610, 814, 910
VpaK11BI	GGWCC	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	890
XapI	RAATTY	2 cut(s)	407, 560
XceI	RCATGY	2 cut(s)	545, 945
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	98, 887
ZrmI	AGTACT	2 cut(s)	633, 797
Zsp2I	ATGCAT	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.