Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000185

Physical Location & Seq

Genomic Coordinates Forward (+)

44977743 .. 44992570

Gene Structure 14828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCCTTAGAAACAGATGGTATTTTAAAATCATTTTCAGATTCACCGCCAACTCATTACACTGTAAAAATAGAGTTATTTTCGATGATAACTGAACTTTTTTCAGAGGATGGATATGAATCATCACAATTTGAAGCCGGAGGATACAAATGGAAACTGGTGTTGTACCCAAATGGAAACATGAGGAGGAATGTGGGAGACCACATCTCTATCTACTTGGTAATAGCTGGAACAGATTCACTTCCAACTGGTTGGGAGGTATATGTTGATTTCAGATTGTTTTTGCTCGATCAGAATAAGAAAGCCTACTCTGTTTTTGAAGATGCTTTTACAAAGCAAAAGTGCTTTAATGGAGCTATGCTTGATGCGGCTGGTTTTGATAAACTTATCCCCATTAAAGATTTTACTGATGTTTCCAATGGATATCTTATTGATGATACATGCGTGTATGGAGCTGAGGTCTTTGTTTGTAAAGAAAGGAGAACAGGGAAAGGAGAGTGTCTATCAAGGATAAGAAATACCTCCGTGTACAAGCATGTTTGGAAGATTGATAATTTTTCAGAATTGGACGCTGAATCCTATTCATCGGAACCCTTTAATGCTGGAGGCTATGAATGGAAGATAAAGCTCTATCCCAAGGGAACCGGTGATGGAAAGGATAGTCATCTTTCTCTGTTTTTCATATTGGCAAATCCTGAGACCCTTCCTCCTGGCTCTAGTATATTTGCAGATTATACATCGCGCATCCTAGATCAGATTCATGACAGGCATCACTCTAAAAGGGCAACTAATGGCAGGATCTTCAGTGCCTTGCATCCGAGTTGGGGTTACGATAAATTCATTGCACTGGAGATGTTCAGTCCGGCAGACAAGGGTTTTTTGATGAATGACACTTGCATAGTGGAGGTAGAGGTCACTGTCCGTGGAATTACTGGAGTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MATH

Protein Analysis

314

Amino Acids

35.42

Weight (kDa)

5.32

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	19 - 154	2.6e-33	MATH domain
MATH	PF00917	35 - 156	9.8e-12	MATH domain
MATH_2	PF22486	178 - 305	3.5e-36	MATH domain
MATH	PF00917	183 - 307	5.5e-13	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000185)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17380
fragaria_vesca	FvH4_4g21140 FvH4_4g21140 FvH4_4g21190 FvH4_4g21293 FvH4_4g21321 FvH4_4g21321 FvH4_4g21321 FvH4_4g21850 FvH4_6g51410 FvH4_7g09650
malus_domestica	MD07G1100800.v1.1 MD13G1142200.v1.1 MD13G1142800.v1.1 MD13G1142900.v1.1 MD13G1143000.v1.1 MD13G1143200.v1.1 MD13G1143500.v1.1 MD13G1144900.v1.1 MD13G1145100.v1.1 MD13G1145600.v1.1 MD16G1132700.v1.1 MD16G1132900.v1.1 MD16G1138600.v1.1 MD16G1138800.v1.1 MD16G1146500.v1.1
prunus_persica	Prupe.1G107200_v2.0.a1 Prupe.1G107200_v2.0.a1 Prupe.1G107400_v2.0.a1 Prupe.1G107500_v2.0.a1 Prupe.1G107700_v2.0.a1 Prupe.1G107800_v2.0.a1 Prupe.1G107900_v2.0.a1 Prupe.1G108000_v2.0.a1 Prupe.2G123800_v2.0.a1 Prupe.7G081500_v2.0.a1 Prupe.7G081600_v2.0.a1 Prupe.7G081700_v2.0.a1
pyrus_communis	pycom13g12350 pycom13g12370 pycom13g12380 pycom13g12390 pycom13g12400 pycom13g12440 pycom16g12300
rosa_chinensis	RchiOBHm_Chr1g0346551 RchiOBHm_Chr1g0378981 RchiOBHm_Chr4g0402791 RchiOBHm_Chr4g0410831 RchiOBHm_Chr4g0426731 RchiOBHm_Chr4g0426761 RchiOBHm_Chr4g0426771 RchiOBHm_Chr4g0426801 RchiOBHm_Chr4g0426981 RchiOBHm_Chr4g0427031 RchiOBHm_Chr4g0427041 RchiOBHm_Chr4g0427051 RchiOBHm_Chr4g0427071 RchiOBHm_Chr4g0427081 RchiOBHm_Chr4g0428091 RchiOBHm_Chr4g0428111 RchiOBHm_Chr5g0048271
rosa_laevigata	RLG00000007181 RLG00000007182 RLG00000007233 RLG00000007236 RLG00000007239 RLG00000007263 RLG00000007264 RLG00000007265 RLG00000007269 RLG00000007277 RLG00000007278 RLG00000007279 RLG00000007282 RLG00000028794
rosa_multiflora	Rmu_co8499169.1_g000001 Rmu_sc0000953.1_g000004 Rmu_sc0000953.1_g000009 Rmu_sc0000953.1_g000010 Rmu_sc0000953.1_g000016 Rmu_sc0000953.1_g000021 Rmu_sc0000953.1_g000028 Rmu_sc0000953.1_g000029 Rmu_sc0001734.1_g000009 Rmu_sc0002091.1_g000024 Rmu_sc0004940.1_g000016 Rmu_sc0009599.1_g000017 Rmu_sc0010934.1_g000001 Rmu_sc0013367.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308240 Rroxscaffold_5G00368720 Rroxscaffold_5G00368730 Rroxscaffold_5G00368760 Rroxscaffold_5G00368770 Rroxscaffold_5G00368870 Rroxscaffold_5G00368900 Rroxscaffold_5G00368910 Rroxscaffold_5G00369810 Rroxscaffold_5G00369820
rosa_rugosa	Rorug01G0181000 Rorug04G0208500 Rorug04G0214500 Rorug04G0214700 Rorug04G0214800 Rorug04G0214900 Rorug04G0215400 Rorug04G0215600 Rorug04G0215700 Rorug04G0215800 Rorug04G0218400 Rorug04G0222200 Rorug04G0222300
rosa_samantha	Rh1AG200200 Rh1BG166500 Rh1CG185200 Rh1DG197300 Rh4AG264300 Rh4AG269500 Rh4AG269800 Rh4AG269900 Rh4AG270800 Rh4AG271300 Rh4AG271400 Rh4AG271600 Rh4AG279600 Rh4BG275800 Rh4BG276100 Rh4BG276200 Rh4BG277100 Rh4BG277400 Rh4BG277500 Rh4BG285000 Rh4CG290400 Rh4CG290700 Rh4CG290800 Rh4CG290900 Rh4CG291800 Rh4CG292100 Rh4CG292200 Rh4DG272800 Rh4DG273100 Rh4DG273200 Rh4DG273400 Rh4DG274300 Rh4DG274900 Rh4DG275000 Rh4DG282100 Rh7AG411500
rosa_wichuraiana	Rw0G012470 Rw1G016770 Rw2G005260 Rw4G023380 Rw4G023410 Rw4G023420 Rw4G023510 Rw4G023530 Rw4G023540 Rw4G023550 Rw4G023560 Rw4G024290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	742
AciI	CCGC	2 cut(s)	47, 368
AclWI	GGATC	1 cut(s)	806
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	787
AfaI	GTAC	2 cut(s)	167, 530
AfiI	CCNNNNNNNGG	1 cut(s)	824
AgeI	ACCGGT	1 cut(s)	644
AgsI	TTSAA	2 cut(s)	134, 320
AjnI	CCWGG	1 cut(s)	709
AluBI	AGCT	4 cut(s)	227, 356, 455, 628
AluI	AGCT	4 cut(s)	227, 356, 455, 628
Alw26I	GTCTC	2 cut(s)	192, 692
AlwI	GGATC	1 cut(s)	806
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	836
AsiGI	ACCGGT	1 cut(s)	644
Asp700I	GAANNNNTTC	1 cut(s)	235
AspLEI	GCGC	1 cut(s)	744
AsuHPI	GGTGA	2 cut(s)	36, 659
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BbvCI	CCTCAGC	1 cut(s)	456
BccI	CCATC	3 cut(s)	11, 104, 644
BciT130I	CCWGG	1 cut(s)	711
BciVI	GTATCC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	192, 692
BfaI	CTAG	2 cut(s)	717, 749
BfmI	CTRYAG	1 cut(s)	941
BfuI	GTATCC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	369
BlsI	GCNGC	1 cut(s)	370
Bme1390I	CCNGG	1 cut(s)	711
BmiI	GGNNCC	2 cut(s)	591, 643
BmrFI	CCNGG	1 cut(s)	711
BmsI	GCATC	5 cut(s)	313, 355, 753, 778, 823
BpmI	CTGGAG	2 cut(s)	624, 869
Bpu10I	CCTNAGC	1 cut(s)	456
BsaBI	GATNNNNATC	2 cut(s)	118, 663
BsaI	GGTCTC	2 cut(s)	192, 692
BsaJI	CCNNGG	2 cut(s)	636, 922
BsaWI	WCCGGW	1 cut(s)	644
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 474, 691, 721
Bsc4I	CCNNNNNNNGG	1 cut(s)	824
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	4 cut(s)	162, 253, 852, 937
Bse3DI	GCAATG	1 cut(s)	840
Bse8I	GATNNNNATC	2 cut(s)	118, 663
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	636, 922
BseGI	GGATG	3 cut(s)	115, 744, 814
BseJI	GATNNNNATC	2 cut(s)	118, 663
BseLI	CCNNNNNNNGG	1 cut(s)	824
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	2 cut(s)	447, 687
BseNI	ACTGG	4 cut(s)	162, 253, 852, 937
BseRI	GAGGAG	1 cut(s)	199
Bsh1236I	CGCG	1 cut(s)	742
BshFI	GGCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	138, 645, 863
BslI	CCNNNNNNNGG	1 cut(s)	824
BsmAI	GTCTC	2 cut(s)	192, 692
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	2 cut(s)	192, 692
Bsp1407I	TGTACA	1 cut(s)	528
Bsp143I	GATC	3 cut(s)	289, 751, 798
BspACI	CCGC	2 cut(s)	47, 368
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	448, 688
BspFNI	CGCG	1 cut(s)	742
BspHI	TCATGA	1 cut(s)	760
BspLI	GGNNCC	2 cut(s)	591, 643
BspPI	GGATC	1 cut(s)	806
BspTNI	GGTCTC	2 cut(s)	192, 692
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	644
BsrGI	TGTACA	1 cut(s)	528
BsrI	ACTGG	4 cut(s)	162, 253, 852, 937
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	636, 922
BssMI	GATC	3 cut(s)	289, 751, 798
BssT1I	CCWWGG	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	2 cut(s)	64, 919
BstAUI	TGTACA	1 cut(s)	528
BstDEI	CTNAG	3 cut(s)	7, 456, 696
BstDSI	CCRYGG	1 cut(s)	922
BstF5I	GGATG	3 cut(s)	115, 744, 814
BstFNI	CGCG	1 cut(s)	742
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	3 cut(s)	292, 754, 801
BstMAI	GTCTC	2 cut(s)	192, 692
BstMBI	GATC	3 cut(s)	289, 751, 798
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	444, 539
BstSCI	CCNGG	1 cut(s)	709
BstSFI	CTRYAG	1 cut(s)	941
BstUI	CGCG	1 cut(s)	742
BstX2I	RGATCY	1 cut(s)	798
BstXI	CCANNNNNNTGG	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	798
BsuI	GTATCC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	922
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	3 cut(s)	115, 744, 814
BtsIMutI	CAGTG	4 cut(s)	60, 811, 845, 915
CciI	TCATGA	1 cut(s)	760
CfoI	GCGC	1 cut(s)	744
Cfr10I	RCCGGY	1 cut(s)	644
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	2 cut(s)	166, 529
CspAI	ACCGGT	1 cut(s)	644
CviAII	CATG	4 cut(s)	181, 441, 536, 761
CviQI	GTAC	2 cut(s)	166, 529
DdeI	CTNAG	3 cut(s)	7, 456, 696
DpnI	GATC	3 cut(s)	291, 753, 800
DpnII	GATC	3 cut(s)	289, 751, 798
DraI	TTTAAA	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	636
Eco31I	GGTCTC	2 cut(s)	192, 692
Eco32I	GATATC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	425
EcoT14I	CCWWGG	1 cut(s)	636
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	4 cut(s)	184, 444, 539, 764
FatI	CATG	4 cut(s)	180, 440, 535, 760
Fnu4HI	GCNGC	1 cut(s)	369
FokI	GGATG	3 cut(s)	122, 731, 801
Fsp4HI	GCNGC	1 cut(s)	369
FspBI	CTAG	2 cut(s)	717, 749
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	1 cut(s)	369
GsuI	CTGGAG	2 cut(s)	624, 869
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	3 cut(s)	138, 645, 863
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	4 cut(s)	184, 444, 539, 764
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HinfI	GANTC	5 cut(s)	41, 119, 236, 575, 757
HpaII	CCGG	3 cut(s)	138, 645, 863
HphI	GGTGA	2 cut(s)	36, 659
Hpy166II	GTNNAC	1 cut(s)	529
Hpy188I	TCNGA	8 cut(s)	40, 106, 275, 294, 562, 589, 756, 819
Hpy188III	TCNNGA	2 cut(s)	695, 761
Hpy8I	GTNNAC	1 cut(s)	529
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	2 cut(s)	64, 919
HpyCH4V	TGCA	4 cut(s)	728, 814, 845, 897
HpyF3I	CTNAG	3 cut(s)	7, 456, 696
Hsp92II	CATG	4 cut(s)	184, 444, 539, 764
HspAI	GCGC	1 cut(s)	742
Kzo9I	GATC	3 cut(s)	289, 751, 798
LmnI	GCTCC	2 cut(s)	353, 452
LweI	GCATC	5 cut(s)	313, 355, 753, 778, 823
MaeI	CTAG	2 cut(s)	717, 749
MaeIII	GTNAC	2 cut(s)	827, 913
MalI	GATC	3 cut(s)	291, 753, 800
MboI	GATC	3 cut(s)	289, 751, 798
MboII	GAAGA	4 cut(s)	332, 556, 631, 793
MflI	RGATCY	1 cut(s)	798
MluCI	AATT	5 cut(s)	128, 553, 563, 836, 927
MmeI	TCCRAC	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	235
MseI	TTAA	4 cut(s)	26, 348, 396, 597
MspI	CCGG	3 cut(s)	138, 645, 863
MspR9I	CCNGG	1 cut(s)	711
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	1 cut(s)	742
NdeII	GATC	3 cut(s)	289, 751, 798
NlaIII	CATG	4 cut(s)	184, 444, 539, 764
NlaIV	GGNNCC	2 cut(s)	591, 643
NmuCI	GTSAC	1 cut(s)	913
NspI	RCATGY	2 cut(s)	444, 539
PagI	TCATGA	1 cut(s)	760
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	5 cut(s)	41, 119, 236, 575, 757
PinAI	ACCGGT	1 cut(s)	644
PkrI	GCNGC	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	2 cut(s)	591, 643
PsuI	RGATCY	1 cut(s)	798
RsaI	GTAC	2 cut(s)	167, 530
RsaNI	GTAC	2 cut(s)	166, 529
SaqAI	TTAA	4 cut(s)	26, 348, 396, 597
SatI	GCNGC	1 cut(s)	369
Sau3AI	GATC	3 cut(s)	289, 751, 798
ScrFI	CCNGG	1 cut(s)	711
SetI	ASST	9 cut(s)	229, 261, 358, 457, 462, 524, 630, 909, 915
SfaNI	GCATC	5 cut(s)	313, 355, 753, 778, 823
SfcI	CTRYAG	1 cut(s)	941
Sse9I	AATT	5 cut(s)	128, 553, 563, 836, 927
SsiI	CCGC	2 cut(s)	47, 368
SspMI	CTAG	2 cut(s)	717, 749
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	2 cut(s)	64, 919
TaqI	TCGA	2 cut(s)	83, 288
TasI	AATT	5 cut(s)	128, 553, 563, 836, 927
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	5 cut(s)	41, 119, 236, 575, 757
Tru1I	TTAA	4 cut(s)	26, 348, 396, 597
Tru9I	TTAA	4 cut(s)	26, 348, 396, 597
TscAI	CASTG	4 cut(s)	67, 811, 852, 922
TseFI	GTSAC	1 cut(s)	913
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	7 cut(s)	132, 573, 627, 670, 749, 829, 899
TspGWI	ACGGA	2 cut(s)	514, 911
TspRI	CASTG	4 cut(s)	67, 811, 852, 922
XapI	RAATTY	1 cut(s)	836
XceI	RCATGY	2 cut(s)	444, 539
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	2 cut(s)	717, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.